rna8415, rna8415 (mRNA) Nannochloropsis gaditana

Overview
Namerna8415
Unique Namerna8415
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1536
Alignment locationKK037248.1:624015..624370 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100224g5.5616.mrna
Orig protein idgnl|cribi|Naga_100224g5.5616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:624015..624370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100224g5gene8156Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8415rna8415-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22285.1cds8388Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8415 ID=rna8415|Name=rna8415|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp
ATGGAGCGACCGCTGCCCACAAGGAATTCGGAAAGCCACCCCATGTCACT
ATCACCTTCCCCCCTATATGAAGAAATCTCACCAGAGACAGCAGCCAATA
CGTACCCTGTAATCTCCGTTCCCAGCATTGGGCAGAGGAGATGCAACCCG
AAAAGGCACCGACCACGCCCGAGCTGTGTTCCCGCCCTGGTCCCCGACTC
CTTGGCCGTTCAAAATTTTCTTAAGTCCATGCGGGACACGCTGCCCTCAT
CACGGAAACGTCCCGCACCGTCCTCGTACTCAAGGCCAGGTCTCCTCTCC
TCTGTCACAGCTGGGCCAGAGAGGCAAACGAAGAATGCCCGAGCCCTCTC
CCTGCACCCACTGCGGCAGGACACCACCTCTCCTCCTGCCCAGCACGTAA
ACTTTCGGCCCATCCAAGAATCTTTCCTTTTGGAAGTATGCATGCTGCCC
TTTTTCACGAAACAAGGTTTTTCCCACGTACAGGCTGCTGACCTGCGCTG
TCAAAAAGAGTACAGGGGCGGCAACACGAAGGACATAGCTAGGACGAGCA
GCAAGCCTGTGGACCGACACTGCTTCCCGCATGGACGGCGCGCGGGGTAC
ACTACTGAGAGGACCAAGAGACCGCTGGAAGGAAACCTTTCGAGCGGGGG
GGCTCCAGGGGGAAAGGAGGGTGTACGCAAGCGATTTGAATTCCAACGTG
TGATCTCCCCCGCCGACAGCACGGCCACCACGTGCAGCGACGTGTCCATC
CTCTGCGACGATACCTTGGGTGGATATGGAAGCGCTGGCACTGGCTCCTC
CCCCCCCCTCTCGGGACGTGGGCGGCCCATGGCCAAGACTGACCGGGCCC
CCACCCAGTCTGCGGCCTCCTCCTTGTCTTCCCCCTGTCCTTCTTCTACG
AGCAAAGCCTGCGCCGCGGCAGCCTTCCGCTCCCCGGTTGCTACGGAATC
CACGCAGTGCAGGGGAAAGACCACGCCTTCGGTGCCTCCCCATGCTTTGG
CAGTGAGCAGCAAGGAAGCCCAGAGGTGCGCGTCGGCCGGCCGTTCGACC
TCATCCGCCTTTACCCCTTTCCATTCTCCCCGCTCCTCGGTGCCCTCTCT
CTCTTGCACGAATATGGGACCGCTCCTTTCTCCTTCCTCCTCGTCTCCCT
GCTCGTCACCCCTGTGGGAAGGGGTCTCCATCACCCATCCTTCCCCAGCG
CCGATCTCACTCGTCTGTCATACGCACCCGTCGGCACAAGACAGTCTCTG
CGATGCAGCGTGGGAGGAAGCGCGCTGTGTCATTATGGGTGGGAAACAAA
GCATGGAAAACCTAGGAGAGGAGGAAGATATCTTAGCCCTGTGCGACGGC
ATGGACGCCTTTTGGGATTCTTTTTTGTACGAAGAAAAGAGGAGGAAAGG
AGAGGACGAGGAGGGCAAGGATGCGATGAGGGAAGGCTCAGAAATGGACG
AGCTCAAAGAAATTTTCACCGCCTTGGAAGGCCCCGAAAGAGGGGACGTG
AGAGAGGGGGAGGACGGCAGCGGGGCTTGGTTCTAG
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protein sequence of rna8415

>rna8415-protein ID=rna8415-protein|Name=rna8415|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MMDKGRNLQRDDEGTDSGLTWRSQHVGKMRLMLEYEWGKAIYCNFARLAI
MYASSLEGGLINILWFE
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mRNA from alignment at KK037248.1:624015..624370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8415 ID=rna8415|Name=rna8415|organism=Nannochloropsis gaditana|type=mRNA|length=356bp|location=Sequence derived from alignment at KK037248.1:624015..624370+ (Nannochloropsis gaditana)
ATGATGGACAAAGGGCGTAACCTGcgtgaggggaagaggcaaggATGAGA
GAGCGAAGAAAtgaagaggaatgggagTGATGCAGGAACAAAGAGCGAGA
CGATGAAGGGACCGACAGTGGCCTGACATGGAGAAGTCAACATGTGGGAA
AGATGCGGTTGATGCTTGAATATGAATGGGGAAAGGCGATATACTGTAAT
TTTGCTCGATTAGCCATTATGTATGCTTCAAGGTTTGCAGTATAGGAGCT
AATTCAAGTAAATACTTAACAGGACCAACATGTCGATATCCCGGGCATCT
TGATAAAATTTGAAAGCTTGGAAGGGGGACTGATAAATATCTTGTGGTTT
GAGTAG
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Coding sequence (CDS) from alignment at KK037248.1:624015..624370+

>rna8415 ID=rna8415|Name=rna8415|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at KK037248.1:624015..624370+ (Nannochloropsis gaditana)
ATGATGGACAAAGGGCGTAACCTGcAGCGAGACGATGAAGGGACCGACAG
TGGCCTGACATGGAGAAGTCAACATGTGGGAAAGATGCGGTTGATGCTTG
AATATGAATGGGGAAAGGCGATATACTGTAATTTTGCTCGATTAGCCATT
ATGTATGCTTCAAGCTTGGAAGGGGGACTGATAAATATCTTGTGGTTTGA
GTAGATGATGGACAAAGGGCGTAACCTGcAGCGAGACGATGAAGGGACCG
ACAGTGGCCTGACATGGAGAAGTCAACATGTGGGAAAGATGCGGTTGATG
CTTGAATATGAATGGGGAAAGGCGATATACTGTAATTTTGCTCGATTAGC
CATTATGTATGCTTCAAGCTTGGAAGGGGGACTGATAAATATCTTGTGGT
TTGAGTAGATGATGGACAAAGGGCGTAACCTGcAGCGAGACGATGAAGGG
ACCGACAGTGGCCTGACATGGAGAAGTCAACATGTGGGAAAGATGCGGTT
GATGCTTGAATATGAATGGGGAAAGGCGATATACTGTAATTTTGCTCGAT
TAGCCATTATGTATGCTTCAAGCTTGGAAGGGGGACTGATAAATATCTTG
TGGTTTGAGTAG
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Synonyms
Publications