rna8414, rna8414 (mRNA) Nannochloropsis gaditana

Overview
Namerna8414
Unique Namerna8414
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2398
Alignment locationKK037248.1:620552..622087 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100224g4.5617.mrna
Orig protein idgnl|cribi|Naga_100224g4.5617
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:620552..622087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100224g4gene8155Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22286.1cds8387Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8414rna8414-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8414 ID=rna8414|Name=rna8414|organism=Nannochloropsis gaditana|type=mRNA|length=2398bp
ATGAGGGTCTTTGTTGAGACTCCGTGTACTTTTACGCGGGAGAATGTGTC
ATTCAAAAGCTCACGAAGACGCCCCGCATACTTCACGGTCATGAGGTCGT
TGCACCAAGGCAACGAGATGCCAAATGCGGAATGGGAGTTGGACAGGTCC
TCGTGGCCTATCGTCCACGGGTCAAGGGAGTCTTTAGACTACACCTCTCT
CCCCACACCCCTCACAGCGGCCTTGCACTTTTACAATTCTCAAGGTCTGT
CTCCTTCGGCTCGCGCCGCTTCCTCCTTCACCATGTTGCGAGATGACACC
GAGGGCGTCGATGACAAAAAAGGTGAAGAAGAGGAGGGAAAAGTGTACCG
ACGAGTCATCGATGCCATGCGGGAACTCCTCCTGGCAAAAGGCCAGGAGG
ACGGTGCCAGAGCAGTCGAGGATGCGATACACGCGTACATGAGAAAGGGA
GGAAAGCGATTTTCCATGGCAAATGCGAATCCTGTTTCTATCATCACTGA
GCGAGTGAATGAGCAGGAGCAGCGCTTGTGGACGAGTGGATTTAAGCATG
TCTTAGTCTTTCGACAAGTTCTCGGGGCTCCGACCCTTGAGTTGCTGGCC
GAATACGAGCACGGGGGCTTCGATTTCCATTACCACGGGTCGTACTCGTT
TGTAGCCAAATCCAAACCGGAGTCGAGCGAGGGAGGGAGGGAGGGGGGAG
GGAGGGAGGGAGGGAGGGGGGAGGGCAGCCGGGGAAAGCCTGTCCACATA
TGTGGTTGCGGTGAAGCAAGACATCTACACCTATACATTGATGGAAAGGG
AAGGAGGGGAGGGAAACCGGAGGGGGAGGACCTGAGGGAGGACGGGGCGG
AGGACGGGGCGGAGGAAGACGACGAGTCCAACAGCATCGTGGGCGTGACC
CTGACGGAGGATGGGACTGTGGTGGTTGCCGCCAAGGGAGGGAACGTTAC
CGCCCTGCGTCATAACCCTTCCCTTGCCGCCTCTACGCCCACGGCCCAAG
CCGGGGAGAGCGCTCTGCGCCCGGTGGCCTACTTCCCTCTCTCCCGCGTG
GTCGCCTCCTCCGCCCCCATCCACATTTCCAACTCCTTGGCCGTGCACGG
GCAGGGAGTCTACATCGTCACACAGGAGGAGATGGTACGCCTGGATATGG
ACACATCCTCCGCGTCCTTGAAGTTCCGATGGGCCACTCCCTACGGACGA
GGCGGACTCCCTTGGTACACGTCCCGTCTGGGCCCGGGCTCGGGCTCAAC
GCCCTCCTTGACCTCCTGCCAAGGCCGAGATATGGTGGTGATCACCGACG
GCGAGTTGAGAATGAATCTGATCTACCTGGATGCGGAGACGGGTGGGGAG
GGAGGGTGTAAGGCCTTCGTTGTGAACAATTATGTGGGCACGGACGGCTT
GGACGCCGACACCCAGTGCACGGACGCCCCAGGCGTCAAGGGGAAGGAGG
AGCTGGCCGCGTTCTGTAATATGCTGCAACCTACCTTTATTAGCAAGGTC
TGTCCAGCGGTCTTCGGTTGTATGGCCTATGGGGCAGCCATGTATACACT
GGATGAGGAGCAGAAAGCGCTGAAGCAGCTTTGGGCGCGGGACGACGTGA
GCTGCGGCACTTCCATTCCCCTCATCAGCGGACCCTCCGACGGCAGCCCC
TCCAGCACCTACTGTGTGGGCATGCTCAGGAACAGCAGTCGCTGGACGTT
GTTGGCCTTGGACACCGAGACCGGAGAGGAACGCTTTCGCTTTCCTTACT
ATTCCGAGGGAAAGGACCGAGTGGCCAATTTCTTTGGGAACCCGTATTAC
GCGGGCGTGGAGGCCGTGGCCCCCGGCACCTTGGCCATGGGGTCAATCGG
TGGTCTTATCTACCTGACACCCACCGGCCCCACTTCCCGTCTGCATTCTC
CTCCTTCCGCGGTAGCATCGTCGGCCTCCGCCCGGCCCGCGTCCGCTGCC
CGCGTGCGTGAGAGTAGGGCAAGGGGGGTGGACGGAAACAGTATCCAGGC
CCTCGGTCTTGTCGGTATTGTGATGGGCCTTGTCTTGAGCCTGGGACTCC
TCGTGCGCGCGTGGCACAGGGCAAAACAGAACGAAGGGAGGGCGAGAAGG
AGGGCAGTGGAGGGGGAAGACGGTCTTGGTGGCGGATATCTTCCCCTCGC
AGAGGATGACCGCATTTAGGAGACGGGTTGAAGTCCGCTGGGAGCATCGT
ACGAGCGGTTTTCGTGGATGGCCATTGTGGAAAAATTGCAGGGAATGTAT
GCGAGGTAGCTCCACCGACGGGCTTGATTGACGGGTTATGCTTGAAAATT
CTGAGGTTGGACTCTGACTTGCCGAGCCGAGTATGACACGAAAAAGGTGC
GAAGCCGTGCCCATTGAAATCAAATACAGGACATCATGTCTCTTTCTA
back to top

protein sequence of rna8414

>rna8414-protein ID=rna8414-protein|Name=rna8414|organism=Nannochloropsis gaditana|type=polypeptide|length=511bp
MERPLPTRNSESHPMSLSPSPLYEEISPETAANTYPVISVPSIGQRRCNP
KRHRPRPSCVPALVPDSLAVQNFLKSMRDTLPSSRKRPAPSSYSRPGLLS
SVTAGPERQTKNARALSLHPLRQDTTSPPAQHVNFRPIQESFLLEVCMLP
FFTKQGFSHVQAADLRCQKEYRGGNTKDIARTSSKPVDRHCFPHGRRAGY
TTERTKRPLEGNLSSGGAPGGKEGVRKRFEFQRVISPADSTATTCSDVSI
LCDDTLGGYGSAGTGSSPPLSGRGRPMAKTDRAPTQSAASSLSSPCPSST
SKACAAAAFRSPVATESTQCRGKTTPSVPPHALAVSSKEAQRCASAGRST
SSAFTPFHSPRSSVPSLSCTNMGPLLSPSSSSPCSSPLWEGVSITHPSPA
PISLVCHTHPSAQDSLCDAAWEEARCVIMGGKQSMENLGEEEDILALCDG
MDAFWDSFLYEEKRRKGEDEEGKDAMREGSEMDELKEIFTALEGPERGDV
REGEDGSGAWF
back to top

mRNA from alignment at KK037248.1:620552..622087-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8414 ID=rna8414|Name=rna8414|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp|location=Sequence derived from alignment at KK037248.1:620552..622087- (Nannochloropsis gaditana)
ATGGAGCGACCGCTGCCCACAAGGAATTCGGAAAGCCACCCCATGTCACT
ATCACCTTCCCCCCTATATGAAGAAATCTCACCAGAGACAGCAGCCAATA
CGTACCCTGTAATCTCCGTTCCCAGCATTGGGCAGAGGAGATGCAACCCG
AAAAGGCACCGACCACGCCCGAGCTGTGTTCCCGCCCTGGTCCCCGACTC
CTTGGCCGTTCAAAATTTTCTTAAGTCCATGCGGGACACGCTGCCCTCAT
CACGGAAACGTCCCGCACCGTCCTCGTACTCAAGGCCAGGTCTCCTCTCC
TCTGTCACAGCTGGGCCAGAGAGGCAAACGAAGAATGCCCGAGCCCTCTC
CCTGCACCCACTGCGGCAGGACACCACCTCTCCTCCTGCCCAGCACGTAA
ACTTTCGGCCCATCCAAGAATCTTTCCTTTTGGAAGTATGCATGCTGCCC
TTTTTCACGAAACAAGGTTTTTCCCACGTACAGGCTGCTGACCTGCGCTG
TCAAAAAGAGTACAGGGGCGGCAACACGAAGGACATAGCTAGGACGAGCA
GCAAGCCTGTGGACCGACACTGCTTCCCGCATGGACGGCGCGCGGGGTAC
ACTACTGAGAGGACCAAGAGACCGCTGGAAGGAAACCTTTCGAGCGGGGG
GGCTCCAGGGGGAAAGGAGGGTGTACGCAAGCGATTTGAATTCCAACGTG
TGATCTCCCCCGCCGACAGCACGGCCACCACGTGCAGCGACGTGTCCATC
CTCTGCGACGATACCTTGGGTGGATATGGAAGCGCTGGCACTGGCTCCTC
CCCCCCCCTCTCGGGACGTGGGCGGCCCATGGCCAAGACTGACCGGGCCC
CCACCCAGTCTGCGGCCTCCTCCTTGTCTTCCCCCTGTCCTTCTTCTACG
AGCAAAGCCTGCGCCGCGGCAGCCTTCCGCTCCCCGGTTGCTACGGAATC
CACGCAGTGCAGGGGAAAGACCACGCCTTCGGTGCCTCCCCATGCTTTGG
CAGTGAGCAGCAAGGAAGCCCAGAGGTGCGCGTCGGCCGGCCGTTCGACC
TCATCCGCCTTTACCCCTTTCCATTCTCCCCGCTCCTCGGTGCCCTCTCT
CTCTTGCACGAATATGGGACCGCTCCTTTCTCCTTCCTCCTCGTCTCCCT
GCTCGTCACCCCTGTGGGAAGGGGTCTCCATCACCCATCCTTCCCCAGCG
CCGATCTCACTCGTCTGTCATACGCACCCGTCGGCACAAGACAGTCTCTG
CGATGCAGCGTGGGAGGAAGCGCGCTGTGTCATTATGGGTGGGAAACAAA
GCATGGAAAACCTAGGAGAGGAGGAAGATATCTTAGCCCTGTGCGACGGC
ATGGACGCCTTTTGGGATTCTTTTTTGTACGAAGAAAAGAGGAGGAAAGG
AGAGGACGAGGAGGGCAAGGATGCGATGAGGGAAGGCTCAGAAATGGACG
AGCTCAAAGAAATTTTCACCGCCTTGGAAGGCCCCGAAAGAGGGGACGTG
AGAGAGGGGGAGGACGGCAGCGGGGCTTGGTTCTAG
back to top

Coding sequence (CDS) from alignment at KK037248.1:620552..622087-

>rna8414 ID=rna8414|Name=rna8414|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at KK037248.1:620552..622087- (Nannochloropsis gaditana)
ATGGAGCGACCGCTGCCCACAAGGAATTCGGAAAGCCACCCCATGTCACT
ATCACCTTCCCCCCTATATGAAGAAATCTCACCAGAGACAGCAGCCAATA
CGTACCCTGTAATCTCCGTTCCCAGCATTGGGCAGAGGAGATGCAACCCG
AAAAGGCACCGACCACGCCCGAGCTGTGTTCCCGCCCTGGTCCCCGACTC
CTTGGCCGTTCAAAATTTTCTTAAGTCCATGCGGGACACGCTGCCCTCAT
CACGGAAACGTCCCGCACCGTCCTCGTACTCAAGGCCAGGTCTCCTCTCC
TCTGTCACAGCTGGGCCAGAGAGGCAAACGAAGAATGCCCGAGCCCTCTC
CCTGCACCCACTGCGGCAGGACACCACCTCTCCTCCTGCCCAGCACGTAA
ACTTTCGGCCCATCCAAGAATCTTTCCTTTTGGAAGTATGCATGCTGCCC
TTTTTCACGAAACAAGGTTTTTCCCACGTACAGGCTGCTGACCTGCGCTG
TCAAAAAGAGTACAGGGGCGGCAACACGAAGGACATAGCTAGGACGAGCA
GCAAGCCTGTGGACCGACACTGCTTCCCGCATGGACGGCGCGCGGGGTAC
ACTACTGAGAGGACCAAGAGACCGCTGGAAGGAAACCTTTCGAGCGGGGG
GGCTCCAGGGGGAAAGGAGGGTGTACGCAAGCGATTTGAATTCCAACGTG
TGATCTCCCCCGCCGACAGCACGGCCACCACGTGCAGCGACGTGTCCATC
CTCTGCGACGATACCTTGGGTGGATATGGAAGCGCTGGCACTGGCTCCTC
CCCCCCCCTCTCGGGACGTGGGCGGCCCATGGCCAAGACTGACCGGGCCC
CCACCCAGTCTGCGGCCTCCTCCTTGTCTTCCCCCTGTCCTTCTTCTACG
AGCAAAGCCTGCGCCGCGGCAGCCTTCCGCTCCCCGGTTGCTACGGAATC
CACGCAGTGCAGGGGAAAGACCACGCCTTCGGTGCCTCCCCATGCTTTGG
CAGTGAGCAGCAAGGAAGCCCAGAGGTGCGCGTCGGCCGGCCGTTCGACC
TCATCCGCCTTTACCCCTTTCCATTCTCCCCGCTCCTCGGTGCCCTCTCT
CTCTTGCACGAATATGGGACCGCTCCTTTCTCCTTCCTCCTCGTCTCCCT
GCTCGTCACCCCTGTGGGAAGGGGTCTCCATCACCCATCCTTCCCCAGCG
CCGATCTCACTCGTCTGTCATACGCACCCGTCGGCACAAGACAGTCTCTG
CGATGCAGCGTGGGAGGAAGCGCGCTGTGTCATTATGGGTGGGAAACAAA
GCATGGAAAACCTAGGAGAGGAGGAAGATATCTTAGCCCTGTGCGACGGC
ATGGACGCCTTTTGGGATTCTTTTTTGTACGAAGAAAAGAGGAGGAAAGG
AGAGGACGAGGAGGGCAAGGATGCGATGAGGGAAGGCTCAGAAATGGACG
AGCTCAAAGAAATTTTCACCGCCTTGGAAGGCCCCGAAAGAGGGGACGTG
AGAGAGGGGGAGGACGGCAGCGGGGCTTGGTTCTAG
back to top
Synonyms
Publications