rna8412, rna8412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8412
Unique Name	rna8412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	864
Alignment location	KK037248.1:609470..612865 -

Link to JBrowse

Properties


Property Name	Value
Product	Pectin lyase fold/virulence factor
Orig transcript id	gnl\|cribi\|Naga_100224g2.5620.mrna
Orig protein id	gnl\|cribi\|Naga_100224g2.5620
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:609470..612865 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100224g2	gene8153	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22289.1	cds8385	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8412	rna8412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:609470..612865-
coding sequence from alignment at KK037248.1:609470..612865-

mRNA sequence

>rna8412 ID=rna8412|Name=rna8412|organism=Nannochloropsis gaditana|type=mRNA|length=864bp
ATGAAAAGAGTGTTAATTAGTTTCCCGTACAACGATAAAATCTGTCGATG
GGCGACGTGGATGACACTGACGAAGGATCAGGGAGAAATGGATTCCTTTG
CCGCCCATGTGGACGAAGACATTGTCGTCCCGTCGCTGTTCGCGCGAGAT
ACCCCAAGGGCCTGTGTGGAAAAAGAGGAAGGGGAAAGACCAGACAGGAT
GGAGGAGGACGAAAAGCAAGAGCCCCCCACAAATCAGCACGTGCAACAGC
GTGCAGCGCCCGAAATCAAGGCGATCGATCGATCTTCGGTTGCGCGAATT
TGTTCAGGACAGGTGGTCATTGACCTAGCCACTGCTGTGAAGGAGTTAGT
GGAGAACTCTTTGGATGCCGGGGCCACACAGGTCGAGGTTAAATTGAAAA
ATTGGGGCGTGGAATCAATTGAGGTCTCAGACAATGGAAGTGGTGTTGCG
CCGCAGAATTTCCAGGCCCTGACCCTCAAGTATCACACGAGCAAACTCTC
CACTTTCGCCGATCTAGAATCAGTCGCTTCCTTCGGCTTTCGGGGGGAGG
CCCTGTCCTCTCTGTGTGAGATTGCGGGGGCCTTCGAAGTGAGCACACGA
GGGGAGAACGAGGCCATTGGCGCCAAGATCGTCTATGACCGGAGCGGCAA
GATCCTTTCCCAGACCCCAACCGCCCGCCAGCGAGGGACCACAGTCTGCG
TGGCCAGACTCTTCGAGCCCCTGCCCGTGCGGAGGGCGGAGTTCAAACGG
ACGGTCCCCAAGCAGTCCGCCAAACTCTTAAGGAATCTTCAAGCCTACGC
CCTGGTCGCGACGAATGTGCGGATCACGTGCTCCAACACCAAGGGCGCGA
AAGGCATCAGGTGA

protein sequence of rna8412

>rna8412-protein ID=rna8412-protein|Name=rna8412|organism=Nannochloropsis gaditana|type=polypeptide|length=1131bp
MGYVAVEGCTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLVIRRRVT
LVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYR
LRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVA
ESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIFVNMAI
FASSLGAGGYVANLGGTVVITGCLFNYAGTFVCTMGLGYLFFLGGGATIL
TGCIVTTTIGFAAYFGGGIGIFTGSGVAVMTGFIYAANGIMGIGTGLGFQ
IAVGAGVSIRTGVIQTTMSALGYVTGCGITNYIGAGIAVFSDVILARSTA
LLTFFGTGSYLYLGAGSATIVNAVGFFNTGIGANGFVGGDMAVFGGYMSR
INQVYISTSAISFAAGQGADLFIGLGGASLVLNLYITPATPVAFRSRGLV
AIYVAGNNVFLSTQLGNATVLFNVLTVNKHGQTDWSRNIFVARKISWRFT
DVGPNPDDFVGRRLEAPGENKAGLDPAKRSGLGKPATLAARGEDVEVRQT
HPTVPRFLTGSLGSETSFDVKPTVTDILNKYLPVEDVESIAEDTTGEEGH
DRVEGHGNQNDGPEATLAKGGPETSPNTSQGRVEDNAVASVTGPKTNYSG
DGDLGNITHNAFYAFAEIPGLKVERTKTDKIYVAAPMDVCGVCDVTPGNT
FDNVDGPGALSACGMQNTCATSDASTLALPPGGEGDGNGAGQAGGEQPGS
GMWVTSREEKSANSTVQLLEIRSTFTPFAAPPLSSSGASPAVAGVNKIEV
AAALGEAIVSLGLSERWHLRVEPSWESSKNVDPYLRLEGDAEMEESDATF
DYGSIDPAEVANQEACGRKESFKAYLVSDWKNVTDEISRKLKTSTGTKAL
TLALQKEVEHTAAVAANATDGENDGGMPAPPSVCELVVYRTTSLYVPSTT
FAGSGATAVTRLASAPVTRRTTASTSAFHRVLSADGLRFELEEAEVEEDD
EQVKALLSREASAALTLLIPDSTDPYALLRELPPRVDAVEIDENYSLVLS
NFPGTFQMATLTVRAVPEKGEDVLLATLPSQPHMLTRQQVWSWRPRDSLG
AEQLVKGREYYLEVTSSDGMAFDSTNKFVIR

mRNA from alignment at KK037248.1:609470..612865-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8412 ID=rna8412|Name=rna8412|organism=Nannochloropsis gaditana|type=mRNA|length=3396bp|location=Sequence derived from alignment at KK037248.1:609470..612865- (Nannochloropsis gaditana)
ATGGGGTACGTGGCCGTGGAAGGGTGCACTCCCAAAAACGCGGAAGAGCT
CCGGTACATGATCGACCACACGACCTGTCCACGCTTGACCTTGGTGCCCG
CCACGAACTACTCGATCACGGAGCAGCTGGTCATCCGCCGCCGGGTCACC
CTGGTGGGTCGGCCGTTGGGGTTGCCGATCATCGACGCCCACAACACGAC
CCGGGCCTTCCTGGTGGAGGCAGGCGGGTTCTTGGACGTGCGTTTTGTGG
AAATCGTGAAGGGAAAATTCGTGGAGGTCGTCCCCCTGGTTCTTTACCGC
CTCCGCGGCCCCACATGCTATATTCGACGGGGGGGGGTCGCCCTCTTCAC
AGGCTGTCGGTTCAGTGCCAACTGGAGGAACGCCGCGCTATTTTTGGGGA
TCACGCCCCCCCAGACCAACGTGCAAGTCTTTGGAGGTGGCATTGTGGCC
GAGTCGGGCACGCTGCGGGTCACGGACTGCCACGTATTTAGGCCGCGGAT
TGGGATTGCCTTTAGGGAGATTCAATTTGTAGGGGGCGAATTTCTGGTTC
TGGGAGGAAACATGTACCTCACGGGCTGCATCTTTGTGAATATGGCGATC
TTTGCTAGTTCTCTGGGCGCGGGTGGGTATGTGGCTAATTTGGGAGGCAC
CGTAGTCATCACCGGATGTCTATTCAATTACGCGGGAACTTTTGTCTGTA
CTATGGGTTTAGGGTACCTCTTCTTCCTGGGGGGGGGCGCGACCATTTTG
ACGGGCTGCATCGTCACCACCACGATCGGCTTCGCTGCGTACTTTGGAGG
AGGGATCGGTATCTTCACGGGGAGTGGTGTGGCAGTCATGACGGGATTCA
TCTACGCCGCGAATGGGATCATGGGGATTGGCACGGGCTTGGGCTTTCAA
ATTGCTGTAGGCGCAGGGGTCAGCATTCGCACGGGGGTCATTCAGACCAC
CATGTCGGCGCTGGGTTACGTAACTGGCTGTGGAATTACAAACTACATCG
GGGCGGGCATTGCTGTCTTCTCCGATGTCATTCTTGCGCGGTCAACCGCC
CTTCTTACCTTTTTTGGCACGGGAAGTTATTTGTATCTAGGGGCAGGCTC
CGCGACGATCGTAAACGCCGTGGGATTCTTCAACACGGGTATCGGAGCGA
ATGGCTTCGTGGGGGGGGACATGGCAGTCTTTGGCGGCTATATGTCCCGT
ATCAACCAGGTTTATATATCGACAAGTGCAATATCGTTTGCGGCAGGTCA
AGGCGCCGACCTTTTCATCGGGCTGGGCGGGGCCAGCCTAGTCTTGAATC
TGTACATTACACCTGCTACTCCAGTGGCGTTCCGTTCCCGGGGTCTCGTG
GCAATTTATGTGGCGGGGAACAACGTGTTCCTCTCCACTCAATTGGGGAA
TGCCACCGTCCTTTTCAACGTCTTGACCGTCAACAAGCATGGGCAAACGG
ACTGGTCCCGGAACATCTTCGTGGCCCGGAAAATCTCCTGGAGGTTCACG
GACGTGGGCCCCAACCCCGACGATTTCGTCGGCCGACGTTTGGAGGCGCC
AGGAGAAAACAAGGCAGGCCTGGACCCGGCCAAGAGATCGGGACTTGGAA
AGCCCGCGACGCTGGCGGCACGGGGGGAGGATGTCGAAGTAAGACAGACG
CACCCCACGGTGCCGCGATTTCTTACGGGAAGTTTGGGCAGTGAGACCAG
CTTTGACGTCAAGCCGACAGTAACGGACATCCTAAACAAGTATTTGCCGG
TCGAGGACGTGGAAAGCATTGCAGAGGACACGACTGGGGAAGAGGGCCAT
GACAGGGTGGAGGGGCATGGGAACCAAAACGACGGACCGGAGGCGACTCT
TGCAAAGGGTGGACCTGAAACGAGCCCTAACACCTCTCAGGGACGTGTCG
AGGATAATGCAGTGGCCTCCGTGACAGGACCCAAGACAAATTACAGCGGG
GACGGGGACCTCGGCAACATCACCCACAACGCTTTTTACGCGTTCGCAGA
GATACCCGGGCTGAAAGTGGAGCGGACCAAAACGGACAAGATCTACGTGG
CTGCCCCTATGGACGTGTGCGGGGTCTGCGACGTGACGCCTGGGAACACC
TTCGACAATGTGGACGGCCCCGGGGCCCTCTCCGCCTGTGGCATGCAAAA
TACATGCGCGACGTCCGATGCGTCCACCCTGGCCTTGCCGCCCGGTGGCG
AAGGAGACGGAAATGGTGCAGGACAGGCAGGCGGAGAACAGCCGGGGTCG
GGTATGTGGGTGACGAGTCGGGAGGAAAAGTCAGCGAACTCCACTGTGCA
ATTGCTCGAGATTCGGTCGACGTTCACTCCATTTGCAGCACCACCTCTGT
CTTCCTCGGGCGCTTCGCCTGCTGTCGCTGGCGTAAACAAAATAGAGGTG
GCCGCAGCCTTGGGTGAAGCAATTGTCAGTTTGGGCTTATCGGAGCGCTG
GCACCTGCGGGTGGAGCCGTCCTGGGAAAGCAGCAAGAATGTGGACCCCT
ACCTCCGTTTGGAGGGAGACGCGGAAATGGAAGAGAGCGACGCGACCTTT
GATTACGGAAGCATCGATCCCGCCGAGGTGGCGAATCAAGAGGCATGTGG
ACGGAAGGAAAGCTTCAAGGCCTACTTAGTCAGCGACTGGAAGAATGTTA
CGGATGAGATCTCTCGGAAATTAAAGACATCCACGGGCACCAAAGCTCTG
ACTCTGGCATTGCAAAAGGAGGTGGAGCACACGGCGGCTGTGGCGGCGAA
CGCGACTGACGGGGAAAACGACGGGGGAATGCCTGCCCCTCCCAGTGTGT
GCGAACTCGTCGTATATCGTACCACTAGCCTCTATGTCCCATCCACGACC
TTCGCCGGTTCGGGGGCCACGGCAGTCACGAGGCTGGCGTCGGCGCCTGT
GACGCGTCGCACGACGGCAAGCACCAGTGCCTTTCATCGTGTCCTTTCTG
CCGACGGCTTGCGTTTCGAACTGGAAGAAGCAGAAGTGGAAGAAGACGAT
GAGCAGGTGAAAGCACTGCTTTCACGGGAGGCCTCTGCAGCGCTCACCTT
GTTAATACCTGACAGCACGGACCCCTACGCCCTCTTACGTGAGCTCCCTC
CCCGCGTGGATGCAGTGGAAATTGATGAAAATTATTCCCTGGTCCTCTCG
AATTTTCCGGGAACATTCCAAATGGCGACGCTGACGGTGCGGGCGGTGCC
AGAGAAGGGGGAAGATGTCTTGCTGGCGACACTGCCGTCCCAGCCACACA
TGCTCACGCGGCAGCAGGTGTGGTCGTGGAGACCACGGGATAGTCTAGGG
GCAGAACAGCTCGTGAAGGGGAGAGAGTACTACTTAGAGGTGACCTCATC
GGATGGAATGGCTTTTGATTCGACCAATAAATTTGTAATCAGATGA

Coding sequence (CDS) from alignment at KK037248.1:609470..612865-

>rna8412 ID=rna8412|Name=rna8412|organism=Nannochloropsis gaditana|type=CDS|length=3396bp|location=Sequence derived from alignment at KK037248.1:609470..612865- (Nannochloropsis gaditana)
ATGGGGTACGTGGCCGTGGAAGGGTGCACTCCCAAAAACGCGGAAGAGCT
CCGGTACATGATCGACCACACGACCTGTCCACGCTTGACCTTGGTGCCCG
CCACGAACTACTCGATCACGGAGCAGCTGGTCATCCGCCGCCGGGTCACC
CTGGTGGGTCGGCCGTTGGGGTTGCCGATCATCGACGCCCACAACACGAC
CCGGGCCTTCCTGGTGGAGGCAGGCGGGTTCTTGGACGTGCGTTTTGTGG
AAATCGTGAAGGGAAAATTCGTGGAGGTCGTCCCCCTGGTTCTTTACCGC
CTCCGCGGCCCCACATGCTATATTCGACGGGGGGGGGTCGCCCTCTTCAC
AGGCTGTCGGTTCAGTGCCAACTGGAGGAACGCCGCGCTATTTTTGGGGA
TCACGCCCCCCCAGACCAACGTGCAAGTCTTTGGAGGTGGCATTGTGGCC
GAGTCGGGCACGCTGCGGGTCACGGACTGCCACGTATTTAGGCCGCGGAT
TGGGATTGCCTTTAGGGAGATTCAATTTGTAGGGGGCGAATTTCTGGTTC
TGGGAGGAAACATGTACCTCACGGGCTGCATCTTTGTGAATATGGCGATC
TTTGCTAGTTCTCTGGGCGCGGGTGGGTATGTGGCTAATTTGGGAGGCAC
CGTAGTCATCACCGGATGTCTATTCAATTACGCGGGAACTTTTGTCTGTA
CTATGGGTTTAGGGTACCTCTTCTTCCTGGGGGGGGGCGCGACCATTTTG
ACGGGCTGCATCGTCACCACCACGATCGGCTTCGCTGCGTACTTTGGAGG
AGGGATCGGTATCTTCACGGGGAGTGGTGTGGCAGTCATGACGGGATTCA
TCTACGCCGCGAATGGGATCATGGGGATTGGCACGGGCTTGGGCTTTCAA
ATTGCTGTAGGCGCAGGGGTCAGCATTCGCACGGGGGTCATTCAGACCAC
CATGTCGGCGCTGGGTTACGTAACTGGCTGTGGAATTACAAACTACATCG
GGGCGGGCATTGCTGTCTTCTCCGATGTCATTCTTGCGCGGTCAACCGCC
CTTCTTACCTTTTTTGGCACGGGAAGTTATTTGTATCTAGGGGCAGGCTC
CGCGACGATCGTAAACGCCGTGGGATTCTTCAACACGGGTATCGGAGCGA
ATGGCTTCGTGGGGGGGGACATGGCAGTCTTTGGCGGCTATATGTCCCGT
ATCAACCAGGTTTATATATCGACAAGTGCAATATCGTTTGCGGCAGGTCA
AGGCGCCGACCTTTTCATCGGGCTGGGCGGGGCCAGCCTAGTCTTGAATC
TGTACATTACACCTGCTACTCCAGTGGCGTTCCGTTCCCGGGGTCTCGTG
GCAATTTATGTGGCGGGGAACAACGTGTTCCTCTCCACTCAATTGGGGAA
TGCCACCGTCCTTTTCAACGTCTTGACCGTCAACAAGCATGGGCAAACGG
ACTGGTCCCGGAACATCTTCGTGGCCCGGAAAATCTCCTGGAGGTTCACG
GACGTGGGCCCCAACCCCGACGATTTCGTCGGCCGACGTTTGGAGGCGCC
AGGAGAAAACAAGGCAGGCCTGGACCCGGCCAAGAGATCGGGACTTGGAA
AGCCCGCGACGCTGGCGGCACGGGGGGAGGATGTCGAAGTAAGACAGACG
CACCCCACGGTGCCGCGATTTCTTACGGGAAGTTTGGGCAGTGAGACCAG
CTTTGACGTCAAGCCGACAGTAACGGACATCCTAAACAAGTATTTGCCGG
TCGAGGACGTGGAAAGCATTGCAGAGGACACGACTGGGGAAGAGGGCCAT
GACAGGGTGGAGGGGCATGGGAACCAAAACGACGGACCGGAGGCGACTCT
TGCAAAGGGTGGACCTGAAACGAGCCCTAACACCTCTCAGGGACGTGTCG
AGGATAATGCAGTGGCCTCCGTGACAGGACCCAAGACAAATTACAGCGGG
GACGGGGACCTCGGCAACATCACCCACAACGCTTTTTACGCGTTCGCAGA
GATACCCGGGCTGAAAGTGGAGCGGACCAAAACGGACAAGATCTACGTGG
CTGCCCCTATGGACGTGTGCGGGGTCTGCGACGTGACGCCTGGGAACACC
TTCGACAATGTGGACGGCCCCGGGGCCCTCTCCGCCTGTGGCATGCAAAA
TACATGCGCGACGTCCGATGCGTCCACCCTGGCCTTGCCGCCCGGTGGCG
AAGGAGACGGAAATGGTGCAGGACAGGCAGGCGGAGAACAGCCGGGGTCG
GGTATGTGGGTGACGAGTCGGGAGGAAAAGTCAGCGAACTCCACTGTGCA
ATTGCTCGAGATTCGGTCGACGTTCACTCCATTTGCAGCACCACCTCTGT
CTTCCTCGGGCGCTTCGCCTGCTGTCGCTGGCGTAAACAAAATAGAGGTG
GCCGCAGCCTTGGGTGAAGCAATTGTCAGTTTGGGCTTATCGGAGCGCTG
GCACCTGCGGGTGGAGCCGTCCTGGGAAAGCAGCAAGAATGTGGACCCCT
ACCTCCGTTTGGAGGGAGACGCGGAAATGGAAGAGAGCGACGCGACCTTT
GATTACGGAAGCATCGATCCCGCCGAGGTGGCGAATCAAGAGGCATGTGG
ACGGAAGGAAAGCTTCAAGGCCTACTTAGTCAGCGACTGGAAGAATGTTA
CGGATGAGATCTCTCGGAAATTAAAGACATCCACGGGCACCAAAGCTCTG
ACTCTGGCATTGCAAAAGGAGGTGGAGCACACGGCGGCTGTGGCGGCGAA
CGCGACTGACGGGGAAAACGACGGGGGAATGCCTGCCCCTCCCAGTGTGT
GCGAACTCGTCGTATATCGTACCACTAGCCTCTATGTCCCATCCACGACC
TTCGCCGGTTCGGGGGCCACGGCAGTCACGAGGCTGGCGTCGGCGCCTGT
GACGCGTCGCACGACGGCAAGCACCAGTGCCTTTCATCGTGTCCTTTCTG
CCGACGGCTTGCGTTTCGAACTGGAAGAAGCAGAAGTGGAAGAAGACGAT
GAGCAGGTGAAAGCACTGCTTTCACGGGAGGCCTCTGCAGCGCTCACCTT
GTTAATACCTGACAGCACGGACCCCTACGCCCTCTTACGTGAGCTCCCTC
CCCGCGTGGATGCAGTGGAAATTGATGAAAATTATTCCCTGGTCCTCTCG
AATTTTCCGGGAACATTCCAAATGGCGACGCTGACGGTGCGGGCGGTGCC
AGAGAAGGGGGAAGATGTCTTGCTGGCGACACTGCCGTCCCAGCCACACA
TGCTCACGCGGCAGCAGGTGTGGTCGTGGAGACCACGGGATAGTCTAGGG
GCAGAACAGCTCGTGAAGGGGAGAGAGTACTACTTAGAGGTGACCTCATC
GGATGGAATGGCTTTTGATTCGACCAATAAATTTGTAATCAGATGA

Synonyms

Publications