rna841, rna841 (mRNA) Nannochloropsis gaditana

Overview
Namerna841
Unique Namerna841
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1997
Alignment locationCM002456.1:545314..546741 -

Link to JBrowse

Properties
Property NameValue
Productrae1-like protein
Orig transcript idgnl|cribi|Naga_100017g32.293.mrna
Orig protein idgnl|cribi|Naga_100017g32.293
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:545314..546741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g32gene805Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29795.1cds841Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna841rna841-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna841 ID=rna841|Name=rna841|organism=Nannochloropsis gaditana|type=mRNA|length=1997bp
AGAGACATTGCACGGTGTATGTGAACGTGGTGTCCATTGACAGAGCGTGT
AAGTCTGTAGCGGCTGGTGTTCTTGGTTATTCTTCGGAAGCGCGATTTGT
TCTATCAGAACTTTTCCCACGAGTACGTAGCTGATGATCTTTCGCTGTGC
CTGAAAAAAGGAGAAAGCCGATCTCTTTCACGTGCCAACCAAACATGGAG
ATTTCTACTATTTTCTCGAGCACTCACAAAGCGATGGGGTACAGGAATAC
AAAGAAAGGCAAACAAGCCTTTTAATTGTCCATTGTATTGTGGCCAACGG
GTTGCGAGCCTGTTTACTTTGCTGAGTGGGAGGTCCATACCCGTCGGCCG
GCGGACTATTCACAAATGCTTACACCATTTGCTCTGTACTCCCTTAAAAC
AACAGGTGCAGGAACAAAGGGAAGCCTGAAGTGGTCAGTCGTTGTTTTTT
CTGTTGTATCCTACCACGCCATTCTCGTCGAAGTCATGGGATGCACTAGC
TCGAAGGGCTGTTGTTTGTGCTGTGTTCCAGATGCAGCCCTGAAATCGTG
CGGCCCCGCCGTGCCCATAGCGAAAGAAATAACAAACGGGTATCCTGCGC
CGCCAGGACATGGCACACATACACCTACGCACTCCCAGGGGCTTGGAGAG
GCCATCCAAACCCGCACCCGCTGTATTTCTGCCTGTGCAGTTCGGTGCAT
TCATGACCATCTTCCAGGACATCGCCACGATCATCAACGAGCCCCCGCGA
AGATGCGTGAAGAAGAAGCCAGAAAGTGGCTATCTGTCAAGCGGAAGGAT
TTCGCGAGGGTGCGGTTGGTTTGCTTTCCCTACGCAGGTGGGAACTCAAA
CTTTTACAAGACGTGGGATGTAAAGGAGGCAGAGATGGTAACGGTCGAAC
TGCCCGGCCGCAATGCCCGCTACAATGAGAAAGTCATCACGGACGTTTAT
CTAATTGCAAAGAAGATTGCAGCGGCGCTTGCTGGACTCGGGTACATTGA
ATCCAAGATTCCGTTGGTCTTCTTTGGACACAGCTTTGGGGCGATTGTCT
CGACGCTTGTGGCCCAGATCTTGCGCAATCAGTACAACTACACACCCAAG
CACTTAGTGGTGTCAGGCTGCGTGCCTCTTCACTTACGAGCAGGCCGTCC
AAAGTTCTCCGTGGCGAACGACGACGAACTGGTGTCGTCGTTGTTGGACA
TGGGGGGCATCACAAAGGAGATGGCTAGGAACCGGGATGTCGTGACTCAG
TTCCTGCCTGCCTTGAAAGGGGACTACCTGGCGGTAGACAAGTACGTCTA
CCACGAGGCGCCACCCCTGGACTGTCCTATCTTGGCGCTGGGCAGTGACC
AGGACTTGCGAGTTCCACAGCACGAGACGGAGGAATGGGCGCGTTTCACG
ACGAAGGAGTTCGAGTCTCGTATCTTTCCCGGGGGACATTTTTTCCTCAA
GCCCTTGGAGAAAGAGGTAGTCGCCTATGTTTCTTCCGTCATTTTCAGAG
ATCTCACCGGACCGGGAGCCACAGATTTGCCTGGGTTCATTCTATTTGAC
CCTAACAAGAAGTGAGCGGTTCCGGCGGTGACAGTGAGGTTTTAGGGTTG
GTACTACAAAGGATTGAAAAATATTGAGCGCGCTCTGACAGTTGGGATGT
ACAAAGCTTTGGAAGCCACAGGATGTACAATTGTGTGCTCGTGCTTCAGG
CGATGTTCGCACTGGAAAGCATCTGGTATGTTGGCAGGTACCAACTTATG
TGTCGAGAGACGCAGTCAGGAACCTGAAGGGAAGTAATGGGAGAGACCGT
ACATGTACTCTGTATGAAATCAAATAAAGTGCACCAAACCTGTTGCTTCA
ATCGTGATGTGCACAATGACGTTTTAATCGTTTTGGACGTCGATTCGCAT
TCTCAAATTTGTCAATCATACAACGTTGGTCTCCATATTATTATCGATAC
TGCGCAAGATTAAGGAGTACTCAGTCACACAAATCAGTAGAATTTCA
back to top

protein sequence of rna841

>rna841-protein ID=rna841-protein|Name=rna841|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MNMQTALGLIMLNPYNANCIIMQGARDPLRFSLASFPSRQPKKAMSWGGL
SSQTVGSTQPVASPDLKLPDTQADGISSLAFAPSETLNLVAAGSWDNSVR
LWNLQEQASQGLGMASQGPGIMATPVGEIKHQGPVLDVCMSPEGNVFSAG
CDNKAMMWTPNPAGGAPQTQQIAEHSAPIKCIAHVPQLPCIVTGSWDQTV
KFWDMRQSSPAHQFQLPHKITAMDCRYPYLCVATSNKEVYVYNLAGGIRP
LKPGGAPIQSQIKAFQTRCLSMFPDCSGFAIGNIEGRVAIHYIDHRQGDK
TVEFAYKCHRIDAKDTPNKTAEIYAVNSISFHNRYGTFATAGADGSYAFW
DKDKRQRLKAPTRFNAPISCASFNHRGDLYGYAVSYDWSKGSEHYNKQQP
NDVFIHVVKEDEIKPKKK
back to top

mRNA from alignment at CM002456.1:545314..546741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna841 ID=rna841|Name=rna841|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at CM002456.1:545314..546741- (Nannochloropsis gaditana)
TGAGCAAAAGTCAGGGAAATGATTGTTTCGGAGGAAAAAAAGAGAACGTC
TCGAGTGCCTCGCCAACCTCATCTTTGTGAGGTCTAGGGTTAGGCGATGG
CCTCGTCTCGAGTATTCCTTCTTTGATGCCCTATGAACATGCAGACTGCC
CTTGGTTTGATAATGCTTAATCCCTACAATGCCAACTGTATTATCATGCA
GGGCGCGCGTGACCCTCTTAGATTCTCACTGGCATCCTTTCCTTCTAGGC
AACCGAAAAAGGCCATGTCCTGGGGGGGATTGAGCAGCCAGACCGTCGGC
AGCACGCAACCAGTGGCTTCGCCCGACCTAAAGCTCCCAGACACACAAGC
TGATGGGATTTCATCGCTGGCATTTGCGCCATCGGAGACGCTAAATCTTG
TAGCGGCAGGGTCTTGGGACAATTCTGTGAGGCTCTGGAACCTCCAGGAG
CAAGCGTCACAGGGACTAGGGATGGCTTCGCAAGGTCCAGGGATTATGGC
CACTCCCGTCGGAGAAATCAAGCACCAAGGTCCTGTGCTGGATGTATGCA
TGTCACCAGAAGGAAACGTTTTCTCGGCGGGCTGTGACAACAAGGCTATG
ATGTGGACCCCTAATCCTGCGGGCGGTGCCCCTCAAACCCAGCAGATAGC
CGAGCATTCGGCTCCCATTAAATGCATCGCACACGTGCCACAGCTACCGT
GCATAGTGACTGGCTCGTGGGACCAGACGGTCAAATTCTGGGACATGCGT
CAATCGTCCCCTGCTCACCAGTTCCAGCTTCCGCATAAAATCACGGCCAT
GGACTGCCGATACCCTTACCTGTGTGTGGCGACGTCCAACAAGGAGGTGT
ACGTGTACAATCTGGCAGGAGGCATCCGACCACTCAAGCCAGGGGGTGCC
CCCATTCAATCTCAGATCAAGGCGTTTCAAACAAGGTGCTTGAGCATGTT
CCCGGACTGCTCTGGGTTTGCCATTGGAAACATTGAAGGACGGGTCGCGA
TCCACTACATCGACCACCGTCAGGGTGATAAAACGGTAGAATTTGCCTAC
AAGTGCCATCGAATCGATGCAAAAGATACTCCAAACAAGACAGCGGAAAT
TTACGCCGTCAATTCTATCTCATTTCACAACCGGTATGGCACGTTTGCTA
CGGCAGGTGCAGATGGGTCGTACGCTTTCTGGGACAAGGACAAGCGACAA
AGGCTGAAAGCACCCACGCGCTTCAACGCTCCCATTTCCTGTGCCTCTTT
CAATCATCGCGGAGATCTCTACGGCTATGCTGTAAGCTATGATTGGAGCA
AAGGCTCTGAGCATTACAACAAACAGCAACCAAATGACGTTTTCATCCAC
GTTGTCAAGGAAGATGAAATTAAGCCCAAGAAAAAGTAAAATGGAATAGA
AGAAAGAAAAATGATTCATAGCCCCATG
back to top

Coding sequence (CDS) from alignment at CM002456.1:545314..546741-

>rna841 ID=rna841|Name=rna841|organism=Nannochloropsis gaditana|type=CDS|length=1257bp|location=Sequence derived from alignment at CM002456.1:545314..546741- (Nannochloropsis gaditana)
ATGAACATGCAGACTGCCCTTGGTTTGATAATGCTTAATCCCTACAATGC
CAACTGTATTATCATGCAGGGCGCGCGTGACCCTCTTAGATTCTCACTGG
CATCCTTTCCTTCTAGGCAACCGAAAAAGGCCATGTCCTGGGGGGGATTG
AGCAGCCAGACCGTCGGCAGCACGCAACCAGTGGCTTCGCCCGACCTAAA
GCTCCCAGACACACAAGCTGATGGGATTTCATCGCTGGCATTTGCGCCAT
CGGAGACGCTAAATCTTGTAGCGGCAGGGTCTTGGGACAATTCTGTGAGG
CTCTGGAACCTCCAGGAGCAAGCGTCACAGGGACTAGGGATGGCTTCGCA
AGGTCCAGGGATTATGGCCACTCCCGTCGGAGAAATCAAGCACCAAGGTC
CTGTGCTGGATGTATGCATGTCACCAGAAGGAAACGTTTTCTCGGCGGGC
TGTGACAACAAGGCTATGATGTGGACCCCTAATCCTGCGGGCGGTGCCCC
TCAAACCCAGCAGATAGCCGAGCATTCGGCTCCCATTAAATGCATCGCAC
ACGTGCCACAGCTACCGTGCATAGTGACTGGCTCGTGGGACCAGACGGTC
AAATTCTGGGACATGCGTCAATCGTCCCCTGCTCACCAGTTCCAGCTTCC
GCATAAAATCACGGCCATGGACTGCCGATACCCTTACCTGTGTGTGGCGA
CGTCCAACAAGGAGGTGTACGTGTACAATCTGGCAGGAGGCATCCGACCA
CTCAAGCCAGGGGGTGCCCCCATTCAATCTCAGATCAAGGCGTTTCAAAC
AAGGTGCTTGAGCATGTTCCCGGACTGCTCTGGGTTTGCCATTGGAAACA
TTGAAGGACGGGTCGCGATCCACTACATCGACCACCGTCAGGGTGATAAA
ACGGTAGAATTTGCCTACAAGTGCCATCGAATCGATGCAAAAGATACTCC
AAACAAGACAGCGGAAATTTACGCCGTCAATTCTATCTCATTTCACAACC
GGTATGGCACGTTTGCTACGGCAGGTGCAGATGGGTCGTACGCTTTCTGG
GACAAGGACAAGCGACAAAGGCTGAAAGCACCCACGCGCTTCAACGCTCC
CATTTCCTGTGCCTCTTTCAATCATCGCGGAGATCTCTACGGCTATGCTG
TAAGCTATGATTGGAGCAAAGGCTCTGAGCATTACAACAAACAGCAACCA
AATGACGTTTTCATCCACGTTGTCAAGGAAGATGAAATTAAGCCCAAGAA
AAAGTAA
back to top
Synonyms
Publications