rna8406, rna8406 (mRNA) Nannochloropsis gaditana

Overview
Namerna8406
Unique Namerna8406
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length701
Alignment locationKK037248.1:585317..587146 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100933g3.1612.mrna
Orig protein idgnl|cribi|Naga_100933g3.1612
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:585317..587146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100933g3gene8146Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8406rna8406-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22295.1cds8379Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8406 ID=rna8406|Name=rna8406|organism=Nannochloropsis gaditana|type=mRNA|length=701bp
TCTCCTGCTCCCTCTTTCCAGGTGACGGCTTGGTGGGACCAGCACAAGCC
AGCCTACTTCAAGCCCAAGCCACGGGCGGACGGCTCCCTCCCTCCCAGTT
GGGGGGAATTGGTCCGGATCCACGGCCCCCCCTTCTTGGTCTGGTGGGGG
ACCCTGTGGGTCCTGGGTGCAGGAGGCTTGTTTCTAGGCTTCGAACACCA
CTTGTTCGGGGCGGACGTGGACGCGTTGACCCTGGCACGGGCTTGGGGGG
TGGACAAGGTGGTGGACTTGAGCGGGGTTCCCCCGAGTCTGGGGAACATG
GGCGTGGCCATCGCCTGCAATGAGGTCTTGGAGGTCGTCCGCTTTCCCTT
GGCCCTCCTGACCGTGAAACCTTGGACGCGGTGGTGGTATCGGGTCAGGG
GAAAGACCATGCCGGAGTAGTTCGGGAGGGAGGGGGGGGGGGAGAGGGGC
ATGTGGGAGGGGCGGTGGGGAGGTGAAGTGAGTAGGGTCCATGTAAGTGT
GGGGGGGGGGAGAAGAGAAATAGAGGAGACAAGGACATGTTGGGGTAAGC
GGGGAAGGGGTGATGGGATGCGCAGAGCGCGATGCCGGTTCGGCCATGGA
ATGGAGTGCGAAGGGCGGGGGGGAGGAGGCTCCGCGCGTCTGGAGGGCGA
GGGGGAGTTTGAAACTCACGCAAAAAGAAACGGAAAACGACGGAATAGTG
A
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protein sequence of rna8406

>rna8406-protein ID=rna8406-protein|Name=rna8406|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MRVLPYVFTLVCAVPAFAFMPPTVSHPRGITMSAEMGQDRRDVVKSTFGF
ASVLGVLASLSPSFPAQAGYLNSDKLPEVIKPSDAEVDQDILKSSEVQNE
LKAIRNYKEGVSSLRSELAGNAQVDLYSRVRKDLDVSSLRDSLNKVNTVF
SEDTQRGTDRIVRIILQDVNELEAATRQRPGTQRSDTKLKLITKKLKKLD
AAFAELLTYF
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mRNA from alignment at KK037248.1:585317..587146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8406 ID=rna8406|Name=rna8406|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp|location=Sequence derived from alignment at KK037248.1:585317..587146- (Nannochloropsis gaditana)
AGCCTCCGGCTGGCTCTCCTTGCCTCTTTGAGGTTGCTGATATTCTCATC
TTTTCCCCGTGCACACAATATAGAGACTCCATACCGCACAGTCAACATGC
GAGTCCTCCCGTATGTCTTCACGTTAGTATGTGCGGTGCCCGCTTTCGCT
TTTATGCCCCCCACCGTCTCTCACCCGCGAGGTACGTCAAGATCATGCGA
GCAGCAGCTTTCTCACCCTGTCCAAACCCGCTGGTCTCTGGCAACCCATC
TTATCGTTTGATGTTTTCACCAATGGCAATCATACACGCACGGATAGGCA
TTACTATGAGCGCAGAGATGGGACAGGACCGCCGAGATGTTGTCAAGAGT
ACCTTTGGTGAGTTACTGCATGACACATCCTCGCCCTCTGCGTCCGTCTT
CCACACGCTTATTCCACGTGGCCCCCCGTGTGTCCGATCGTTTGGTGCTT
GGTGCATGTAGTGCGTTTATCTGCATACATTCTCTTTCGACATCGGATCT
CTCAAATATCTGCGACTCTCAACCCTCGATCCTGGTCGTTTCCCTGCCTT
CACCTACCCCTTGCTCCGTGCGCAGGCTTCGCGAGCGTGCTGGGTGTCTT
GGCATCCCTTTCGCCCTCCTTTCCCGCACAAGCCGGGTATTTGAACAGCG
ATAAACTTCCGGAAGTGATCAAGCCCTCGGACGCCGAGGTGGACCAGGAC
ATTTTGAAGTCCTCCGAGGTCCAAAATGAGTTGAAGGCCATCCGAAACTA
TAAGGAAGGGGTATCAAGTTTGAGGTCTGAATTAGCCGGGAACGCACAAG
TGGATTTGTACTCTCGCGTACGCAAGGTAGGTGGCATTGGAATTATGGCA
CGCGCATCACTGTTCCTCTAGATCTTTCCATTTGATATCCTCCCTTTCTT
TCCTCCCTCCCGGCGCCGGGTCCCCTATCCTCGTGTTGCCCAGGACTTGG
ACGTCTCCTCCCTCCGCGACTCGCTCAACAAAGTGAACACGGTCTTCTCC
GAAGACACTCAGCGAGGCACGGACCGGATCGTCCGCATCATCTTGCAAGG
TAGGCCATCCCCCCACCCAAGGCCATCAGGGAGAGGACGGGATCCAAGGA
CTCAAAGCGAGGAGGGAAAGCGCACCGCGGTGTTGCCATGCTCCTGTCAA
AGGCTCTGGACACTCACTCAACTCAAGTATAACTCAAGCATAGATCGCGC
CGTTCGATTCCCGTGCATGGTGTGGGTCCGGGCTCTCACCCTTCTCCTCC
CCACCCTCTTCCCTTCCTTTGACCACACTCCCTTTCGCGCCATAAATTAG
ACGTAAACGAGCTAGAGGCGGCGACGCGGCAGCGACCCGGGACCCAACGT
TCGGACACCAAGCTGAAACTGATCACCAAAAAGCTGAAGAAGCTCGATGC
GGCCTTCGCTGAATTGTTGACGTACTTTTAAGGTGGCGGCCCGGGACTCA
GGACCCACGTCGGAGGCTCTTCCAGGGTCGAGCCATGCCGTTTACGAGGA
AACGACGTCGTCCGCGCGGTGGAAGCAGGGAGCAAGCAGGGCGGGGAAGA
AAGCGGAGGGGCGTCACGAGGAACAACACGTGCTTGTGGGACGGTCCCAC
ATCGAAAGTGGTCGAAGGGGGGGGTTAGGGTCCGAGGGCAATGCTGGCAC
GCTTGGGTACGAAAAAACGACCTTTTCGGGCGCGGAAGCAGACAAGGTGC
GAATGCCGCGTGCGCGTGCAGAGGGGGGGCGATGTCCTGTAGGAACCTTG
TGGAATGAGAGGAAGGACCGGGGGCCCAGCAATGACCCAACCGGCGAGAA
AGCAAACCAAGCTATCGTCAGAAGCGTCCC
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Coding sequence (CDS) from alignment at KK037248.1:585317..587146-

>rna8406 ID=rna8406|Name=rna8406|organism=Nannochloropsis gaditana|type=CDS|length=3165bp|location=Sequence derived from alignment at KK037248.1:585317..587146- (Nannochloropsis gaditana)
ACGTAAACGAGCTAGAGGCGGCGACGCGGCAGCGACCCGGGACCCAACGT
TCGGACACCAAGCTGAAACTGATCACCAAAAAGCTGAAGAAGCTCGATGC
GGCCTTCGCTGAATTGTTGACGTACTTTTAAGACTTGGACGTCTCCTCCC
TCCGCGACTCGCTCAACAAAGTGAACACGGTCTTCTCCGAAGACACTCAG
CGAGGCACGGACCGGATCGTCCGCATCATCTTGCAAGGCTTCGCGAGCGT
GCTGGGTGTCTTGGCATCCCTTTCGCCCTCCTTTCCCGCACAAGCCGGGT
ATTTGAACAGCGATAAACTTCCGGAAGTGATCAAGCCCTCGGACGCCGAG
GTGGACCAGGACATTTTGAAGTCCTCCGAGGTCCAAAATGAGTTGAAGGC
CATCCGAAACTATAAGGAAGGGGTATCAAGTTTGAGGTCTGAATTAGCCG
GGAACGCACAAGTGGATTTGTACTCTCGCGTACGCAAGGCATTACTATGA
GCGCAGAGATGGGACAGGACCGCCGAGATGTTGTCAAGAGTACCTTTGAT
GCGAGTCCTCCCGTATGTCTTCACGTTAGTATGTGCGGTGCCCGCTTTCG
CTTTTATGCCCCCCACCGTCTCTCACCCGCGAGACGTAAACGAGCTAGAG
GCGGCGACGCGGCAGCGACCCGGGACCCAACGTTCGGACACCAAGCTGAA
ACTGATCACCAAAAAGCTGAAGAAGCTCGATGCGGCCTTCGCTGAATTGT
TGACGTACTTTTAAGACTTGGACGTCTCCTCCCTCCGCGACTCGCTCAAC
AAAGTGAACACGGTCTTCTCCGAAGACACTCAGCGAGGCACGGACCGGAT
CGTCCGCATCATCTTGCAAGGCTTCGCGAGCGTGCTGGGTGTCTTGGCAT
CCCTTTCGCCCTCCTTTCCCGCACAAGCCGGGTATTTGAACAGCGATAAA
CTTCCGGAAGTGATCAAGCCCTCGGACGCCGAGGTGGACCAGGACATTTT
GAAGTCCTCCGAGGTCCAAAATGAGTTGAAGGCCATCCGAAACTATAAGG
AAGGGGTATCAAGTTTGAGGTCTGAATTAGCCGGGAACGCACAAGTGGAT
TTGTACTCTCGCGTACGCAAGGCATTACTATGAGCGCAGAGATGGGACAG
GACCGCCGAGATGTTGTCAAGAGTACCTTTGATGCGAGTCCTCCCGTATG
TCTTCACGTTAGTATGTGCGGTGCCCGCTTTCGCTTTTATGCCCCCCACC
GTCTCTCACCCGCGAGACGTAAACGAGCTAGAGGCGGCGACGCGGCAGCG
ACCCGGGACCCAACGTTCGGACACCAAGCTGAAACTGATCACCAAAAAGC
TGAAGAAGCTCGATGCGGCCTTCGCTGAATTGTTGACGTACTTTTAAGAC
TTGGACGTCTCCTCCCTCCGCGACTCGCTCAACAAAGTGAACACGGTCTT
CTCCGAAGACACTCAGCGAGGCACGGACCGGATCGTCCGCATCATCTTGC
AAGGCTTCGCGAGCGTGCTGGGTGTCTTGGCATCCCTTTCGCCCTCCTTT
CCCGCACAAGCCGGGTATTTGAACAGCGATAAACTTCCGGAAGTGATCAA
GCCCTCGGACGCCGAGGTGGACCAGGACATTTTGAAGTCCTCCGAGGTCC
AAAATGAGTTGAAGGCCATCCGAAACTATAAGGAAGGGGTATCAAGTTTG
AGGTCTGAATTAGCCGGGAACGCACAAGTGGATTTGTACTCTCGCGTACG
CAAGGCATTACTATGAGCGCAGAGATGGGACAGGACCGCCGAGATGTTGT
CAAGAGTACCTTTGATGCGAGTCCTCCCGTATGTCTTCACGTTAGTATGT
GCGGTGCCCGCTTTCGCTTTTATGCCCCCCACCGTCTCTCACCCGCGAGA
CGTAAACGAGCTAGAGGCGGCGACGCGGCAGCGACCCGGGACCCAACGTT
CGGACACCAAGCTGAAACTGATCACCAAAAAGCTGAAGAAGCTCGATGCG
GCCTTCGCTGAATTGTTGACGTACTTTTAAGACTTGGACGTCTCCTCCCT
CCGCGACTCGCTCAACAAAGTGAACACGGTCTTCTCCGAAGACACTCAGC
GAGGCACGGACCGGATCGTCCGCATCATCTTGCAAGGCTTCGCGAGCGTG
CTGGGTGTCTTGGCATCCCTTTCGCCCTCCTTTCCCGCACAAGCCGGGTA
TTTGAACAGCGATAAACTTCCGGAAGTGATCAAGCCCTCGGACGCCGAGG
TGGACCAGGACATTTTGAAGTCCTCCGAGGTCCAAAATGAGTTGAAGGCC
ATCCGAAACTATAAGGAAGGGGTATCAAGTTTGAGGTCTGAATTAGCCGG
GAACGCACAAGTGGATTTGTACTCTCGCGTACGCAAGGCATTACTATGAG
CGCAGAGATGGGACAGGACCGCCGAGATGTTGTCAAGAGTACCTTTGATG
CGAGTCCTCCCGTATGTCTTCACGTTAGTATGTGCGGTGCCCGCTTTCGC
TTTTATGCCCCCCACCGTCTCTCACCCGCGAGACGTAAACGAGCTAGAGG
CGGCGACGCGGCAGCGACCCGGGACCCAACGTTCGGACACCAAGCTGAAA
CTGATCACCAAAAAGCTGAAGAAGCTCGATGCGGCCTTCGCTGAATTGTT
GACGTACTTTTAAGACTTGGACGTCTCCTCCCTCCGCGACTCGCTCAACA
AAGTGAACACGGTCTTCTCCGAAGACACTCAGCGAGGCACGGACCGGATC
GTCCGCATCATCTTGCAAGGCTTCGCGAGCGTGCTGGGTGTCTTGGCATC
CCTTTCGCCCTCCTTTCCCGCACAAGCCGGGTATTTGAACAGCGATAAAC
TTCCGGAAGTGATCAAGCCCTCGGACGCCGAGGTGGACCAGGACATTTTG
AAGTCCTCCGAGGTCCAAAATGAGTTGAAGGCCATCCGAAACTATAAGGA
AGGGGTATCAAGTTTGAGGTCTGAATTAGCCGGGAACGCACAAGTGGATT
TGTACTCTCGCGTACGCAAGGCATTACTATGAGCGCAGAGATGGGACAGG
ACCGCCGAGATGTTGTCAAGAGTACCTTTGATGCGAGTCCTCCCGTATGT
CTTCACGTTAGTATGTGCGGTGCCCGCTTTCGCTTTTATGCCCCCCACCG
TCTCTCACCCGCGAG
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Synonyms
Publications