rna8401, rna8401 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8401
Unique Name	rna8401
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	800
Alignment location	KK037248.1:576809..579654 -

Link to JBrowse

Properties


Property Name	Value
Product	neurobeachin-like protein
Orig transcript id	gnl\|cribi\|Naga_100913g3.375.mrna
Orig protein id	gnl\|cribi\|Naga_100913g3.375
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:576809..579654 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100913g3	gene8141	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22300.1	cds8374	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8401	rna8401-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:576809..579654-
coding sequence from alignment at KK037248.1:576809..579654-

mRNA sequence

>rna8401 ID=rna8401|Name=rna8401|organism=Nannochloropsis gaditana|type=mRNA|length=800bp
ATGACGGTGTTGGGAGACAAGGGGGAAGGAGGGAGGGAGGGCGGGGGGGA
GGGCGTGAAGGTGGGAGTGGGGGAAGCGTACGATCGGTTGGTGGGCCCCG
GGGTTCGAACCACGGAGGAAGGGAAAAAGATGGCGCGAAGCTTGGAGGAA
GACGTGGTTGGCTTGCAAAACCAAGCCCGAGGGAAATTGGCGCGAAAGCT
GCGGCGGGTCTTGGAGGAACCCTTGATGGACGTGTGCAAGCGTATTGTAG
AAGCCCGGTGCGCGGGCTCGGCCTATGCGTCCGTGCGAGGGTTTCGACGG
GATGTGCACCGGGAATGCGGCCATTTCGTGCGGAAGCACGAGGTAGGGGG
AAAGCTGTCCGCTCGAATGGTGCAGCAGGTGATCGACCAGTTCATTGACA
TGGAACTAGGGGCCTGTTTGGAGACGGTGGGGAAAGAGGAACGCCGGTTG
CGGTTTTGGCGGAAAGTCACATGGGGAGTGGGGGGGGGCCTTGGCCCTCC
TTGCCTACATGAAATATCAGACAGGGACTGTGCAGGGCGGTGGCTTCCTG
CCCCGTCCTCAAGAGCGTGAGCGCCCTCGTCCCCCCTCACCGCTACCGGC
GGGCGGGAAGGGGGCGTGGAGAGGGAGATGACGAGGGAGATAGATGGAGG
GGTGAGGAAGGGGAGAGGTTCGGGTACATTAGAAAAGATACGATATCGGC
ACAAAGCAATGCTGCGGAGGCAGATCGATCATGGGGGCGCGAAGCAAACA
CGTCCTGCCGACATGTTTATGTGAAGCATTCAAGCGAGTCAAATTGAGAG

protein sequence of rna8401

>rna8401-protein ID=rna8401-protein|Name=rna8401|organism=Nannochloropsis gaditana|type=polypeptide|length=781bp
PSLPPSLPPFRPQAGDRVDDVLLPPWAPTAEDFIRLNRAALESEIVSSRL
HLWIDLVFGHAQRGPASIPAKNVFFYLTYAGAVDLAQIEDPALRRATEMQ
IAYFGQCPAQLFPSQPHPPRDFPSQVIYRPLRSLLRRALPLPTHFLTGEQ
RGGWDLPEPVVTIEADHHLVAVRVLPTKILTVNARGVLTFYAWQASFRNA
EPKDFSRLPPPSLSPSLPPSSAYPAHNHPRGPPSLPSPSPSGSTFLLDAG
PHPPLPSNECVTPTAAYTYDPALALQEPALLWRDGGNEAEEGGKEAEKLG
SKGEGQGEGEGESLRPAPASGSRPSGIDGDPSSNPNTTTSMHGSGSHGST
TSLPASHSDPQRPQILKLSLHRDRTPIEQVPRIPPPPLPSTGPFPPFPLH
ITSSGRFVLGAGAPMGIVHLVEVDVETGAVVGEAQMLGHTQAVLCVASAG
LEASGMELVLTGSRDGTGLLWRLGRLQAKTKRPVCFRRPERVLLGHGGPV
LACALSYALGIAATASDGQVLLHAIEAPTLVRRIHMPRALRANGWRFRDC
LLVDEGLVVVGMEGGGEGGGEGGRIQVWTINGNLVAEREIEPAGVREEGL
EGSRASHGSLARLAVIGAARGDGGVLLVAYRDGRVDFYGVMDLELVGSYR
LTAPPSLPPSLPPSLTPHLACVDAGPSPTTPVLLACGTTDGTLVVAGLPL
IHFLKDLEGSNSFTQALLQSFPLKMAQGAVNMAATTIGRARGMASQAKGV
AIEALGEAQTLVREMRRGGLGGVWGMLKGGR

mRNA from alignment at KK037248.1:576809..579654-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8401 ID=rna8401|Name=rna8401|organism=Nannochloropsis gaditana|type=mRNA|length=2846bp|location=Sequence derived from alignment at KK037248.1:576809..579654- (Nannochloropsis gaditana)
CCCTCCCTTCCGCCCTCCCTCCCTCCCTTCCGCCCTCAGGCCGGCGACCG
CGTGGACGACGTCCTCCTTCCCCCCTGGGCCCCCACCGCCGAAGATTTCA
TCCGCCTGAACCGCGCGGCCTTGGAAAGCGAGATCGTCTCCTCCCGGCTG
CACCTCTGGATCGACCTGGTCTTCGGCCACGCCCAACGCGGGCCTGCCTC
CATCCCCGCCAAGAACGTGTTTTTCTACTTGACCTATGCTGGCGCGGTGG
ACCTGGCTCAGATCGAGGACCCCGCACTGCGTCGGGCCACGGAGATGCAA
ATCGCCTACTTCGGACAGTGCCCCGCCCAACTCTTCCCCTCTCAGCCCCA
CCCCCCCCGGGACTTCCCGTCCCAGGTCATCTACCGACCGCTTCGAAGCC
TCCTCCGTCGGGCTCTTCCCCTCCCCACCCACTTTCTGACGGGGGAGCAA
CGCGGCGGCTGGGATTTGCCGGAGCCGGTGGTGACGATCGAGGCGGACCA
TCACCTGGTGGCAGTGCGGGTTCTGCCCACCAAGATATTGACCGTGAATG
CCCGCGGTGTCCTCACTTTCTATGCCTGGCAGGCCTCCTTCAGGAACGCC
GAGCCCAAGGACTTCAGTCGCCTTCCCCCCCCTTCCCTCTCTCCTTCCCT
CCCTCCGTCCTCTGCCTACCCGGCCCATAATCATCCTCGCGGTCCTCCCT
CCCTTCCCTCCCCTTCCCCTTCCGGCTCCACTTTCCTCCTGGACGCCGGG
CCGCACCCTCCGTTGCCCTCGAACGAATGCGTCACACCCACCGCCGCCTA
CACCTACGACCCTGCGCTGGCACTCCAAGAGCCCGCTCTCCTCTGGCGGG
ACGGAGGGAACGAGGCGGAGGAAGGGGGAAAGGAAGCAGAAAAACTGGGG
TCCAAGGGCGAGGGTCAGGGCGAGGGGGAGGGCGAAAGCCTTCGACCTGC
ACCAGCTTCCGGTTCCCGCCCTTCAGGAATAGACGGGGATCCATCTTCTA
ATCCCAACACGACCACATCGATGCACGGAAGCGGCAGCCACGGCAGTACG
ACTTCCCTGCCCGCCTCCCACTCTGATCCTCAGCGTCCTCAAATACTCAA
ACTCTCCCTCCACCGGGACCGAACGCCCATCGAGCAGGTACCTCGGATTC
CCCCCCCCCCTCTTCCTTCCACGGGCCCCTTCCCCCCTTTCCCCCTCCAC
ATCACTAGCTCCGGTCGCTTTGTTTTGGGTGCCGGGGCGCCCATGGGCAT
AGTGCACTTGGTCGAGGTGGACGTGGAGACCGGAGCCGTGGTTGGGGAGG
CCCAGATGCTCGGGCACACCCAAGCAGTCCTCTGTGTCGCCAGCGCCGGC
CTGGAGGCCTCAGGGATGGAATTGGTGCTCACCGGGTCCCGGGACGGCAC
CGGCTTGCTCTGGCGCCTGGGGCGATTACAGGCCAAGACGAAGCGACCGG
TGTGTTTTCGACGCCCCGAGCGTGTCTTGCTCGGCCACGGGGGCCCTGTC
CTGGCCTGTGCCCTTTCTTATGCCCTGGGTATCGCGGCTACGGCCTCGGA
CGGCCAAGTCTTGCTCCACGCGATCGAGGCCCCTACGCTGGTACGACGGA
TCCACATGCCGCGGGCGCTGCGGGCCAATGGCTGGAGGTTTCGGGATTGC
CTGTTGGTGGACGAGGGCCTGGTCGTGGTGGGGATGGAGGGCGGGGGGGA
AGGCGGGGGGGAGGGCGGGCGAATTCAGGTCTGGACCATTAACGGGAACC
TGGTGGCGGAGCGAGAGATCGAGCCGGCAGGGGTGAGAGAGGAGGGTTTG
GAGGGCTCCAGAGCCAGTCATGGCTCCCTTGCCCGCCTTGCCGTCATTGG
GGCGGCGCGCGGGGACGGAGGTGTCCTCCTTGTCGCCTATCGAGACGGAC
GTGTCGATTTTTACGGGGTGATGGACCTGGAGCTCGTGGGCTCCTACCGT
CTGACCGCCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCTTGACTCC
CCACCTGGCCTGCGTCGACGCCGGACCCTCCCCCACCACCCCCGTGCTCC
TCGCCTGTGGCACCACCGACGGCACCCTGGTGGTGGCGGGCCTGCCCCTG
ATCCATTTCCTCAAAGACTTGGAGGGGAGCAACAGCTTTACTCAAGCCCT
GCTCCAATCCTTCCCTTTGAAAATGGCTCAAGGCGCCGTGAACATGGCGG
CCACCACGATCGGACGGGCCCGCGGCATGGCCTCTCAGGCCAAGGGGGTG
GCGATAGAAGCATTGGGGGAGGCCCAGACACTGGTACGGGAGATGCGTAG
GGGGGGGTTGGGGGGGGTGTGGGGCATGCTGAAAGGAGGGCGATAAGGAC
GGAGGGGAAGGCTATTAAGGGAAGAGGAGGAAAGTGGCCAAAGCAGGGTC
CTTGTGAGGGGTATGCCGGGTCAGACGCGTTGCGGCGGGCACGGGAAGCA
CGATGATGTCGAAGCAAAAGGCGTGTGTGGGATGTGTGTGAGCTCAGGTC
TTTTGTGGGGGAGGATCTGGCGGCAGGCATGGGCCAATGTTGAGAAATTG
TAAATATGTGGATAAGATCCAGCCCACGTTTTAGGGGCAGGAGCATTGGA
AATTGGATGCGTGGTGAACGTGCACGGGTGCAGCTATGGGGTCCTGGGAG
CCAAATTTGAAAGATAAGACTTGTATAGCCAGAGATTTGATCAGGGAGGG
GGCAGGTGATGGAAAAACGCGAGCAGAAAATCTGGGCGGGACGACAAGAA
GCCAAAGGGACGACAAGAAGCAAACTAGTCACCCTCCGCTTGGGCATCGT
ACAACGGAAGAAATCAAAATAAAATCTCTCAATTTGACTCGCTTGA

Coding sequence (CDS) from alignment at KK037248.1:576809..579654-

>rna8401 ID=rna8401|Name=rna8401|organism=Nannochloropsis gaditana|type=CDS|length=2346bp|location=Sequence derived from alignment at KK037248.1:576809..579654- (Nannochloropsis gaditana)
CCCTCCCTTCCGCCCTCCCTCCCTCCCTTCCGCCCTCAGGCCGGCGACCG
CGTGGACGACGTCCTCCTTCCCCCCTGGGCCCCCACCGCCGAAGATTTCA
TCCGCCTGAACCGCGCGGCCTTGGAAAGCGAGATCGTCTCCTCCCGGCTG
CACCTCTGGATCGACCTGGTCTTCGGCCACGCCCAACGCGGGCCTGCCTC
CATCCCCGCCAAGAACGTGTTTTTCTACTTGACCTATGCTGGCGCGGTGG
ACCTGGCTCAGATCGAGGACCCCGCACTGCGTCGGGCCACGGAGATGCAA
ATCGCCTACTTCGGACAGTGCCCCGCCCAACTCTTCCCCTCTCAGCCCCA
CCCCCCCCGGGACTTCCCGTCCCAGGTCATCTACCGACCGCTTCGAAGCC
TCCTCCGTCGGGCTCTTCCCCTCCCCACCCACTTTCTGACGGGGGAGCAA
CGCGGCGGCTGGGATTTGCCGGAGCCGGTGGTGACGATCGAGGCGGACCA
TCACCTGGTGGCAGTGCGGGTTCTGCCCACCAAGATATTGACCGTGAATG
CCCGCGGTGTCCTCACTTTCTATGCCTGGCAGGCCTCCTTCAGGAACGCC
GAGCCCAAGGACTTCAGTCGCCTTCCCCCCCCTTCCCTCTCTCCTTCCCT
CCCTCCGTCCTCTGCCTACCCGGCCCATAATCATCCTCGCGGTCCTCCCT
CCCTTCCCTCCCCTTCCCCTTCCGGCTCCACTTTCCTCCTGGACGCCGGG
CCGCACCCTCCGTTGCCCTCGAACGAATGCGTCACACCCACCGCCGCCTA
CACCTACGACCCTGCGCTGGCACTCCAAGAGCCCGCTCTCCTCTGGCGGG
ACGGAGGGAACGAGGCGGAGGAAGGGGGAAAGGAAGCAGAAAAACTGGGG
TCCAAGGGCGAGGGTCAGGGCGAGGGGGAGGGCGAAAGCCTTCGACCTGC
ACCAGCTTCCGGTTCCCGCCCTTCAGGAATAGACGGGGATCCATCTTCTA
ATCCCAACACGACCACATCGATGCACGGAAGCGGCAGCCACGGCAGTACG
ACTTCCCTGCCCGCCTCCCACTCTGATCCTCAGCGTCCTCAAATACTCAA
ACTCTCCCTCCACCGGGACCGAACGCCCATCGAGCAGGTACCTCGGATTC
CCCCCCCCCCTCTTCCTTCCACGGGCCCCTTCCCCCCTTTCCCCCTCCAC
ATCACTAGCTCCGGTCGCTTTGTTTTGGGTGCCGGGGCGCCCATGGGCAT
AGTGCACTTGGTCGAGGTGGACGTGGAGACCGGAGCCGTGGTTGGGGAGG
CCCAGATGCTCGGGCACACCCAAGCAGTCCTCTGTGTCGCCAGCGCCGGC
CTGGAGGCCTCAGGGATGGAATTGGTGCTCACCGGGTCCCGGGACGGCAC
CGGCTTGCTCTGGCGCCTGGGGCGATTACAGGCCAAGACGAAGCGACCGG
TGTGTTTTCGACGCCCCGAGCGTGTCTTGCTCGGCCACGGGGGCCCTGTC
CTGGCCTGTGCCCTTTCTTATGCCCTGGGTATCGCGGCTACGGCCTCGGA
CGGCCAAGTCTTGCTCCACGCGATCGAGGCCCCTACGCTGGTACGACGGA
TCCACATGCCGCGGGCGCTGCGGGCCAATGGCTGGAGGTTTCGGGATTGC
CTGTTGGTGGACGAGGGCCTGGTCGTGGTGGGGATGGAGGGCGGGGGGGA
AGGCGGGGGGGAGGGCGGGCGAATTCAGGTCTGGACCATTAACGGGAACC
TGGTGGCGGAGCGAGAGATCGAGCCGGCAGGGGTGAGAGAGGAGGGTTTG
GAGGGCTCCAGAGCCAGTCATGGCTCCCTTGCCCGCCTTGCCGTCATTGG
GGCGGCGCGCGGGGACGGAGGTGTCCTCCTTGTCGCCTATCGAGACGGAC
GTGTCGATTTTTACGGGGTGATGGACCTGGAGCTCGTGGGCTCCTACCGT
CTGACCGCCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCTTGACTCC
CCACCTGGCCTGCGTCGACGCCGGACCCTCCCCCACCACCCCCGTGCTCC
TCGCCTGTGGCACCACCGACGGCACCCTGGTGGTGGCGGGCCTGCCCCTG
ATCCATTTCCTCAAAGACTTGGAGGGGAGCAACAGCTTTACTCAAGCCCT
GCTCCAATCCTTCCCTTTGAAAATGGCTCAAGGCGCCGTGAACATGGCGG
CCACCACGATCGGACGGGCCCGCGGCATGGCCTCTCAGGCCAAGGGGGTG
GCGATAGAAGCATTGGGGGAGGCCCAGACACTGGTACGGGAGATGCGTAG
GGGGGGGTTGGGGGGGGTGTGGGGCATGCTGAAAGGAGGGCGATAA

Synonyms

Publications