rna8399, rna8399 (mRNA) Nannochloropsis gaditana

Overview
Namerna8399
Unique Namerna8399
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationKK037248.1:574364..574835 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102877g1.7135.mrna
Orig protein idgnl|cribi|Naga_102877g1.7135
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:574364..574835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102877g1gene8139Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8399rna8399-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22301.1cds8372Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8399 ID=rna8399|Name=rna8399|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGCCCTCTTGTCCTGTGTTGGTGCCCTTATCTTTTCCATTTTCTCTCAC
GCAGGCCTCAGCCGCATTCAATGTGGTCAAGTGTTTATTGGTGACCAGCT
CTGTCGTTGTATCCCCTCGGATTGCGCGCATCTCTTCCTCCCTCCATTTG
AGGCTTCATCGACTACAACCATGCGACAGCACTCTCCGATGCTGTCTGGC
ACGTCTACCGTGCTATTCATGCTCGTTTTCTGGAATCTCTCGCACCTTTT
GCTGTCCTGTCCTGTCAACGAGACTTATTCCGGGGGGGCATTACAACTTT
TGCGCCCCAATGACGTCCACAACCGGACCTCTCTCAGCGTAG
back to top

protein sequence of rna8399

>rna8399-protein ID=rna8399-protein|Name=rna8399|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MRLAEGDLNCHSWLQRLLAAPVRSSMDPLATSSPPSSPPSSPPPSQPLPP
PSQGLGLGSLFPTLTPRRHRPPPPVPAIRTEDWPRNTFCRDLRGRAWSVS
WSRPSPPGI
back to top

mRNA from alignment at KK037248.1:574364..574835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8399 ID=rna8399|Name=rna8399|organism=Nannochloropsis gaditana|type=mRNA|length=472bp|location=Sequence derived from alignment at KK037248.1:574364..574835+ (Nannochloropsis gaditana)
ATGAGGCTAGCAGAGGGCGATTTAAACTGTCATAGCTGGCTCCAGCGTCT
TCTAGCCGCCCCTGTCCGCAGCAGTATGGATCCTCtcgccacttcctctc
ccccttcctcccccccttcctcccccccgccctcccaacccctgccccca
ccttcccagggcctgggcctcggctccctcttccccacgcTCACGTGCCa
gaccctcttcctccccgccacctcccgcgcGGACCTCCTCAACCTCTCCA
ATCTCCCCGCCTCGGCGCTCTCCCACGACTTTGTCAAAGACCTGGCTGCC
CTCCATGAGCTCATTCTCTCCCGGCTTCGGCCCAAGCCCGCGCCGGCAcc
gcccacctccaccggTACCCGCAATACGGACAGAGGATTGGCCTCGGAAC
ACTTTTTGTCGGGATCTGCGTGGGCGAGCTTGGTCCGTATCGTGGTcgag
gccctctcctccgggtatttga
back to top

Coding sequence (CDS) from alignment at KK037248.1:574364..574835+

>rna8399 ID=rna8399|Name=rna8399|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at KK037248.1:574364..574835+ (Nannochloropsis gaditana)
ATGAGGCTAGCAGAGGGCGATTTAAACTGTCATAGCTGGCTCCAGCGTCT
TCTAGCCGCCCCTGTCCGCAGCAGTATGGATCCTCtcgccacttcctctc
ccccttcctcccccccttcctcccccccgccctcccaacccctgccccca
ccttcccagggcctgggcctcggctccctcttccccacgcTCACCCCGCG
CCGGCAccgcccacctccaccggTACCCGCAATACGGACAGAGGATTGGC
CTCGGAACACTTTTTGTCGGGATCTGCGTGGGCGAGCTTGGTCCGTATCG
TGGTcgaggccctctcctccgggtatttgaATGAGGCTAGCAGAGGGCGA
TTTAAACTGTCATAGCTGGCTCCAGCGTCTTCTAGCCGCCCCTGTCCGCA
GCAGTATGGATCCTCtcgccacttcctctcccccttcctcccccccttcc
tcccccccgccctcccaacccctgcccccaccttcccagggcctgggcct
cggctccctcttccccacgcTCACCCCGCGCCGGCAccgcccacctccac
cggTACCCGCAATACGGACAGAGGATTGGCCTCGGAACACTTTTTGTCGG
GATCTGCGTGGGCGAGCTTGGTCCGTATCGTGGTcgaggccctctcctcc
gggtatttga
back to top
Synonyms
Publications