rna8398, rna8398 (mRNA) Nannochloropsis gaditana

Overview
Namerna8398
Unique Namerna8398
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1719
Alignment locationKK037248.1:573058..573399 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100785g3.3342.mrna
Orig protein idgnl|cribi|Naga_100785g3.3342
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:573058..573399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100785g3gene8138Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8398rna8398-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22303.1cds8371Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8398 ID=rna8398|Name=rna8398|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp
CGTCTAATGTTCTACCCATATTCCTCCCGGCATAAAGACAACATGGAAGC
CTATCATGCCGTCAGGAGGGTGACGGCCGCGGACGTGGGGCAAGCGCACG
ACCTGGAGACGATTTCTTATCCGGAGGACGAAGCAGCGTCTTTGGCAGGC
ATGCACTACCGTCAGACACACGCCGGTGACTTTTTCTACGGTCTTTATCA
CACGGGCACGGGGCAGCTCTTGGCGCTCATCAACGGCACGCTCTGCCGAG
GCACGACCTTGGAGCACGACACCATGTCCCACCACGACACCCAGGGGAAA
ACGCTGTGCATCCATTCCGTCGTGGTCCGACCTCCTCTCCGCCGTCGGGG
GCTGGCCACCGCTTTTCTCCAAACTTACGTCCACCTCATCCTGGACGCAT
ACCCTGACCGGGTCCTGCGGCTTCGCCTCATCACCAAAGCGCAGAACCTG
GGCCTGTACCATCGGTGCGGTTTCCGTTTCCTCCGTCCCTCCCCCGTTGT
GCACGGACAGGAAAAATGGTTCGAAATGGGCCTGGATCGATTGAGCCTGG
TGGCCAGTGAAGGAGAGTTGGGAAAGGGACTCGGGCGGGCTTTTGTGCAC
GTGGACGCGTTCACTGGAATGGCTTTTCGGGGTAATCCGGCGGCGGTGGT
TTTCTGCCACGGCGACGAGACACCTGAGTGGATGCAACACTGGGCCCGCG
AAATCAATCTGAGCGAGACTGCCTTCGTCTCGCCACTCTTTCCCTCCCAT
CCCCCCTCCTCTTCCTGCCCCTCCTCCTCCCCCCCCGCCTCCTTTTCCCT
GCGCTGGTTCACGCCTGTTTTGGAAGTGGATCTATGCGGTCACGCCACTT
TGGCAGCGGCCCATGCCCTTTGGCAGACGGGCAGGGTGGAGCTCACCTCC
CCCATCACATTCCACACGGCCTCGGGCACCTTACTAGCTCGATGGGGAGG
GAAGGAAGGCGAGGAAGGGGGAGGACGGGGGGGAGGACGTGGATGGATCT
CGCTCGACTTCCCTGCAGAGCCGGTCGTACCGGATGGGGAATGTTTGGGT
GATGAGGAGGGACGCGGACGGGACCTTGGCCTTGTCAGAGAGGCCCTGCA
CCTCGAGGACGAGGGGGCGGGAGGGGGAAGGGAAGGGGGTGACGCGGGGG
GGGGAGCCTTGAAATTCGTGGGCCGGAGTCGGGTGGATGTCCTGGTGGTG
CTGACCCGCGCGGCCTTTGACCGTCTGTACACACAGGTCCCGGACGTGGG
AATACTGGAGAAGATCGAGTGCCGGGGTGTGATTGTCACCTGCCAGGGGG
AAGGGAAGGACGCGGCCGAGGGGGGGGGGGAGGAAGGAAAAGGTGGACGC
AAGCTCCAAGAGTCAGGCATGGAAAGGGCTCATTTTCTCTCCCGTTTTTT
TGCTCCCCGGTGTGGGATCGTGGAGGATCCGGTGACAGGATCGGCACATT
GCTGCCTGGCTCCGTATTGGGCGGGAGAGCTGGGGAAAAGGGATTTAGTG
GGGTACCAGGCGTCCAAGCGAGGGGGTATGGTGAGAGTTAGATACGACGA
GGGGGCGTCGAGGGTGTGTTTGTGGGGTCAAGCCGTGTTGGTGAAGTCAG
GGTGGTTGCACGTGTGAGAGAAAGGAACCTTTGGGGGTGATGCCGGGGCG
CCGGAGTGAGTGAGGGCTTGACAAACTTCAGGAAAATTTTGGAATTAGTA
ACTATACTGAAATTTTCTT
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protein sequence of rna8398

>rna8398-protein ID=rna8398-protein|Name=rna8398|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MPSCPVLVPLSFPFSLTQASAAFNVVKCLLVTSSVVVSPRIARISSSLHL
RLHRLQPCDSTLRCCLARLPCYSCSFSGISRTFCCPVLSTRLIPGGHYNF
CAPMTSTTGPLSA
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mRNA from alignment at KK037248.1:573058..573399+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8398 ID=rna8398|Name=rna8398|organism=Nannochloropsis gaditana|type=mRNA|length=342bp|location=Sequence derived from alignment at KK037248.1:573058..573399+ (Nannochloropsis gaditana)
ATGCCCTCTTGTCCTGTGTTGGTGCCCTtatcttttccattttctctcAC
GCAGGCCTCAGCCGCATTCAATGTGGTCAAGTGTTTATTGGTGACCAGCT
CTGTCGTTGTATCCCCTCGGATTGCGcgcatctcttcctccctccatttg
aGGCTTCATCGACTACAACCATGCGACAGCACTCTCCGATGCTGTCTGGC
ACGTCTACCGTGCTATTCATGCTCGTTTTCTGGAATCTCTCGCACCTTTT
GCTGTCCTGTCCTGTCAACGAGACTTATTCCGGGGGGGCATTACAACTTT
TGCGCCCCAATGACGTCCACAACCGGACCTCTCTCAGCGTAG
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Coding sequence (CDS) from alignment at KK037248.1:573058..573399+

>rna8398 ID=rna8398|Name=rna8398|organism=Nannochloropsis gaditana|type=CDS|length=342bp|location=Sequence derived from alignment at KK037248.1:573058..573399+ (Nannochloropsis gaditana)
ATGCCCTCTTGTCCTGTGTTGGTGCCCTtatcttttccattttctctcAC
GCAGGCCTCAGCCGCATTCAATGTGGTCAAGTGTTTATTGGTGACCAGCT
CTGTCGTTGTATCCCCTCGGATTGCGcgcatctcttcctccctccatttg
aGGCTTCATCGACTACAACCATGCGACAGCACTCTCCGATGCTGTCTGGC
ACGTCTACCGTGCTATTCATGCTCGTTTTCTGGAATCTCTCGCACCTTTT
GCTGTCCTGTCCTGTCAACGAGACTTATTCCGGGGGGGCATTACAACTTT
TGCGCCCCAATGACGTCCACAACCGGACCTCTCTCAGCGTAG
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Synonyms
Publications