rna8392, rna8392 (mRNA) Nannochloropsis gaditana

Overview
Namerna8392
Unique Namerna8392
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1907
Alignment locationKK037248.1:561175..561981 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100465g2.10755.mrna
Orig protein idgnl|cribi|Naga_100465g2.10755
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:561175..561981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100465g2gene8132Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22309.1cds8365Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8392rna8392-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8392 ID=rna8392|Name=rna8392|organism=Nannochloropsis gaditana|type=mRNA|length=1907bp
AAGCTTCACCTTCATTTCCACCGAAAATCTCGTCCTGGTGACAGGCGAAA
AAGTAATGAGAAAATATGAACACTAGAATATACTTCGAATTTCGACAGCT
CGCACGCAGTTGAATATTGTGCGAGTCTTTACGATCACGTAGAATTATGT
AAAGGGTTTTGAGCAGCCCTTCAGTCTTCAACCACCTGCCCTCAGTCGTC
GAAGGCATGGGAAAGTACTTTCTAGTATCGAAATTAACAATTGGCAAGAA
ATCGCCTAACCGATGCATACCCATCAATCATCAATAATGGACTGGCACTT
GGCAATTGTTTCAGCTTTTCAAAACTTTCTTCATGTTGTTTTCCAAGAGA
ACGCTTCTTCCTCTCGAGACAGATTTCACAACACAAATTGGGGAACTTGA
GTCACTCATCAGCTTGCTTCATATCATATCAATCCTCCTGCCGTAGCTTA
CTCACCACAGACTGAAAGGGGACTTCGACTTCCTATGCGTGTCGTCGAGC
TTCATGCTTTGACGACTGTAGCACTGCTTTTCGCGTTGTTGGCGAGAGGG
ACGGAAGGGGGAGCGGTCACATATGCCAATCACGGGGAGCCTGCCCTGCA
GGCGCATTTCAGTGATTTCTACGAGATAATGACTCCCGAGGACTACAGAA
TCTACCAGGACCGCCTCCATGAGATCATCGATTGGGGCCTACGCAACACC
CGTCAGCAAGACCTTCGTAAAGGTTTCCTCCAGGGGGTCGCAGAGGATTG
GCGATTCGTGCCCACGCCCCTGCGCCAGGGTCTCAAGCGCCGGCACAAGG
ATTTCGGGCCCCTCCAGGAGCGGCGCCGGGTGACCTTGGATGAGCGAAAT
CGGCAGATGCGGGATAGGATCGATCGGGGTGTGGCAAAGAAAGGCTACCT
AGTCGCCTACTACATGTTCAATCACGACTGCAATGCCATGGGGCCTGCAG
AAGACAGGGAGCATTCCCTTTTCTTCCAGCCGCTGCCGCGTCTTCGCATG
GGCTGGCCGCATTCGTCCCGGCAAGTCCAGCATTATCTGGTCGCTCTGCG
TCAAAGAAAATTTAATCACATGTACGTTGGGGTCACCCAGGAATTCGCGC
CGTACGGGGAAAGAGAAGTAGAGGATTGGCTTCGACTGAAAGGCTACGAA
GGATTCAAGGTAAAGACCCAGCGAGTCCTCCTAGGCAAAGGACCCGAGAC
GTACGCGTTAGCGAAGGATAAGATAGTGAACTGGTCGTGGGGGGAGGAGG
TGAAATGGGTGCGATTTTCGGAAGGGGAACATGGGATCAACGTGGTGAGT
CAGATCCGGACCTACGGTTTGTTGTGGACGATGAATCCGTTGCGGAAGGT
TCTCTGCCACGAAAAGCCATGGGGCAAACGGGGCGGGGCGGTGGCGGCGG
TGGCGGTGAGCACGCTGCGAGGACACTTACTGGAAGGGGAGGAGAGGTTT
TGCGTCTGGTTCGAAGGAGGAAGACAGGGAGACGTGTGGTTCGACGTGCT
TTCCTTCAGTAAGGGCGCTTTCCCATTAGGGCGGTTGTTGATGCCCGTGG
TGAGACCGTTACAGAACCGTTTCTTGGTCGACGTTGGAAGAGCAATGCAG
AAGCTGGTAGGAGAATCGGTACCAGAAAAAAGCGTGGTGGCGAACAAATC
AAAATGGTGGTGGAAATGAGGGATTCGGAAAAGGAAAGGGAAGAGGAGGG
GCATGGAGGTGCAGCATTTTGTAGAGGGCGGCCCAGTGTGAGGATGCGTG
TGTATATAAGGGTAGGCTTGGGAGGTGGTAGCGCATCACCCCTCCCAGGG
TAGCATCTCTGACTATGAATGTGAAGAAAGAGGGATCGAAGATTCTCGAA
GAAAACGCGACGCGTCGGAAACGCACGATTGGTCGTCCCCGCCCTCGCTT
ACGTTGC
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protein sequence of rna8392

>rna8392-protein ID=rna8392-protein|Name=rna8392|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MSQGWTTSSPFQTRLDIVKHVVSVFLSVKTRLCLRHKFALVSVDGRGSQM
LLPFTSSLQEFTRKLETLSSTTAATSTVDSDTQDDALHLAHLLGETLPSF
FSSSKKKKEEWEELDATTFSCPPPLLRAILLMGASYTFPLLPEPALVEDL
FSHDNFFLDLLYVHARQPFLPPPGPSLSSSPAITNLKKSKAMPMREEDDD
VTVLDSRHGDPAVLSPPTPRRRLSSDIWKACLELLADRHPMLPETGYFFT
VPCVPSRSFCNLVPRSRD
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mRNA from alignment at KK037248.1:561175..561981-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8392 ID=rna8392|Name=rna8392|organism=Nannochloropsis gaditana|type=mRNA|length=807bp|location=Sequence derived from alignment at KK037248.1:561175..561981- (Nannochloropsis gaditana)
ATGTCTCAAGGCTGGACAACCTCCTCTCCCTTCCAAACCCGGCTTGACAT
TGTGAAGCACGTTGTTTCCGTATTCCTTTCCGTGAAAACGCGTCTGTGTC
TTCGGCATAAATTCGCTTTAGTAAGCGTGGATGGGCGTGGAAGCCAAATG
CTCCTCCCCTTCACATCCTCGTTGCAGGAGTTCACGAGGAAGCTCGAAAC
GCTGTCGTCGACGACGGCTGCGACAAGCACTGTGGACTCCGACACACAGG
ACGATGCCCTCCACCTCGCTCATCTCCTCGGTGAAACCCTACCGTCCTTT
TTCTCGTCGAGCAAAAAAAAGAAAGAAGAATGGGAAGAATTGGACGCCAC
CACGTTTTCATGTCCACCTCCCTTACTCCGCGCGATCCTGCTCATGGGGG
CGTCTTACACCTTTCCCCTCCTCCCAGAGCCTGCACTCGTCGAGGACCTC
TTCTCTCACGACAACTTCTTTCTAGACCTCCTGTACGTGCACGCCCGACA
GCCCTTCCTTCCTCCGCCTGGCCCTTCTCTTTCCTCTTCCCCCGCCATCA
CCAACCTTAAGAAATCAAAGGCCATGCCCATGCGAGAGGAGGATGACGAC
GTGACAGTCCTGGACTCGAGGCACGGAGACCCGGCTGTTCTCTCGCCTCC
GACCCCGCGCCGTCGCCTCAGCAGCGACATCTGGAAGGCGTGTTTAGAGC
TGCTTGCCGACCGGCATCCCATGCTGCCAGAGACAGGATATTTCTTCACG
GTCCCGTGCGTCCCCTCCCGTTCCTTCTGCAATCTCGTTCCTCGCTCACG
TGATTGA
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Coding sequence (CDS) from alignment at KK037248.1:561175..561981-

>rna8392 ID=rna8392|Name=rna8392|organism=Nannochloropsis gaditana|type=CDS|length=807bp|location=Sequence derived from alignment at KK037248.1:561175..561981- (Nannochloropsis gaditana)
ATGTCTCAAGGCTGGACAACCTCCTCTCCCTTCCAAACCCGGCTTGACAT
TGTGAAGCACGTTGTTTCCGTATTCCTTTCCGTGAAAACGCGTCTGTGTC
TTCGGCATAAATTCGCTTTAGTAAGCGTGGATGGGCGTGGAAGCCAAATG
CTCCTCCCCTTCACATCCTCGTTGCAGGAGTTCACGAGGAAGCTCGAAAC
GCTGTCGTCGACGACGGCTGCGACAAGCACTGTGGACTCCGACACACAGG
ACGATGCCCTCCACCTCGCTCATCTCCTCGGTGAAACCCTACCGTCCTTT
TTCTCGTCGAGCAAAAAAAAGAAAGAAGAATGGGAAGAATTGGACGCCAC
CACGTTTTCATGTCCACCTCCCTTACTCCGCGCGATCCTGCTCATGGGGG
CGTCTTACACCTTTCCCCTCCTCCCAGAGCCTGCACTCGTCGAGGACCTC
TTCTCTCACGACAACTTCTTTCTAGACCTCCTGTACGTGCACGCCCGACA
GCCCTTCCTTCCTCCGCCTGGCCCTTCTCTTTCCTCTTCCCCCGCCATCA
CCAACCTTAAGAAATCAAAGGCCATGCCCATGCGAGAGGAGGATGACGAC
GTGACAGTCCTGGACTCGAGGCACGGAGACCCGGCTGTTCTCTCGCCTCC
GACCCCGCGCCGTCGCCTCAGCAGCGACATCTGGAAGGCGTGTTTAGAGC
TGCTTGCCGACCGGCATCCCATGCTGCCAGAGACAGGATATTTCTTCACG
GTCCCGTGCGTCCCCTCCCGTTCCTTCTGCAATCTCGTTCCTCGCTCACG
TGATTGA
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Synonyms
Publications