rna8389, rna8389 (mRNA) Nannochloropsis gaditana

Overview
Namerna8389
Unique Namerna8389
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length791
Alignment locationKK037248.1:554148..555082 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101969g1.4454.mrna
Orig protein idgnl|cribi|Naga_101969g1.4454
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:554148..555082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101969g1gene8129Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8389rna8389-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22311.1cds8362Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8389 ID=rna8389|Name=rna8389|organism=Nannochloropsis gaditana|type=mRNA|length=791bp
TGCACGTTTTTGGGTGGTGGGGGTGGCGAGTCTCAACGACCAGGAAGCAG
AAAAAGGCCCCCCTCATTCAACAAGATAAGGGGATTTGTTGCTTGAATAT
TCTTCCATATGCCCGGTCCGGCCACGGAGGGGATCCTATCGTCCCTCGTA
CGATGTCTACACCTTCCTCCTCCCGACTTACATCATGCCCGGCGTTCTAA
TGGCGGTAGTGGGAAGGAAGAAGAGCCATGCAGGTGGGGACCTCGTGGAG
TCCGCCGACGCCTGGAAGAACTCGAGGAAAGCGAAATCCAGGCGTTGCTG
GACGCGTTGAGAGAATACATCGTCGTGGAGGCGAATCCCCAGTCTCGGCA
GGCCACCTTCAAAGGACACGCCCGCGTGCTCGACCTCCCCACCGACGCAG
AGCAGCTGGAAGAGCACGGGGAGGAAGGGATGGAATACCCGGAGGAGGAC
TGCGCAGTGAAGGCGGTAGACGTGCTTCAAGTGCTGCTTGTTTGGCGGAA
AACAAGCCTCAAAGCGATCGAAATTTGCCTGGAAATGCTCGGGCAAGGGG
CTTTGCAGGGGAAAGCGGCGGTGTATTGCATCTCGGAGGTGCGGCGCTCC
GTGGCCGTAGGGGAGACTCTGGGCTTCGACGACGACGAAGAGGAGGAGAA
GGAGGAGGGGGAGGGGGGGAGAGTTGGAAATGGAAGGGCAGAGAGCAGCG
GAAGGAAGAGGAAGCGTGTCCAAGGGACGCTGGGAAAGAAGGAGGAGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAG
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protein sequence of rna8389

>rna8389-protein ID=rna8389-protein|Name=rna8389|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MGAVGAGAREVLGRVRTLRRRVEEEEGGEGRCGEAGAGRRKGRKGRRRIA
CVREEEASGEEGVEEGEEGQEGGREEEGEGGGEETLALVEAFVAQGDSLT
SAVTSWVHSERQKRVGGRGGGRGQVGWLKRCPPSLCALEKVQGAIRTLGL
TVGDISVFLGPDWILPTGGLKERRREINKERQRLRGLVVALMTRQEELRQ
EVRRRQARKATVTDEEVEGEEEEELYVSMGKIRKGGCKRKRRLRSRNLVV
DRWLMDEDGDDAFADLEDFIMPDEYT
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mRNA from alignment at KK037248.1:554148..555082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8389 ID=rna8389|Name=rna8389|organism=Nannochloropsis gaditana|type=mRNA|length=935bp|location=Sequence derived from alignment at KK037248.1:554148..555082+ (Nannochloropsis gaditana)
ATGGGCGCGGTGGGAGCCGGCGCCCGGGAAGTACTGGGGCGCGTTCGAAC
GTTGAGGAgaagagtggaggaggaggagggaggggaggggcgatgtgggg
aggccggcgcgggacggaggaaagggaggaaaggccgtCGGAGGATTGCG
TGcgtgagggaagaggaggcgagtggcgaggagggggtggaggaggggga
ggaaggacaagagggcggaagggaagaggagggagagggtgggggggagg
aaactcTGGCCTTGGTTGAGGCGTTCGTGGCGCAGGGTGACTCGTTGACT
TCTGCGGTGACAAGTTGGGTGCACAGTGAGCGACAAAagcgagtgggagg
gagagggggagggcgagggcaggtgGGCTGGTTGAagcgctgccctccct
ccctgtgcgCCTTGGAGAAGGTACAAGGAGCGATCCGAACGTTGGGACTG
ACGGTTGGGGATATTTCGGTGTTTTTGGGTCCAGATTGGATACTCCCGAC
GGGCGGACTGAAAGAACGGAGGCGAGAGATAAACAAAGAGAGACAACGAT
TGAGAGGGCTGGTGGTTGCCCTCATGACACGGCAGGAGGAGCTAAGACAG
GAGGTGCGAAGACGGCAAGCGCGGAAAGCCACGGTGACTGAcgaagaggt
agagggcgaggaggaggaggaattgtaTGTGAGCATGGGGAAAATCCGAA
AGGGGGGCTGCAAACGGAAACGGCGACTGCGAAGCCGCAACCTGGTGGTC
GACCGTTGGTTAATGGATGAGGACGGGGATGACGCGTTTGCCGACTTGGA
GGATTTCATTATGCCTGATGAGTATACGTAAGGTCCTGTGTTTCACGACC
GTCCCACTCTAGTACAGGGGACGTGAGCGTTCGATCGTGGAAAGGAAAGT
ACAGATGAggcgaaagaaaaagcacgtACATGGAG
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Coding sequence (CDS) from alignment at KK037248.1:554148..555082+

>rna8389 ID=rna8389|Name=rna8389|organism=Nannochloropsis gaditana|type=CDS|length=831bp|location=Sequence derived from alignment at KK037248.1:554148..555082+ (Nannochloropsis gaditana)
ATGGGCGCGGTGGGAGCCGGCGCCCGGGAAGTACTGGGGCGCGTTCGAAC
GTTGAGGAgaagagtggaggaggaggagggaggggaggggcgatgtgggg
aggccggcgcgggacggaggaaagggaggaaaggccgtCGGAGGATTGCG
TGcgtgagggaagaggaggcgagtggcgaggagggggtggaggaggggga
ggaaggacaagagggcggaagggaagaggagggagagggtgggggggagg
aaactcTGGCCTTGGTTGAGGCGTTCGTGGCGCAGGGTGACTCGTTGACT
TCTGCGGTGACAAGTTGGGTGCACAGTGAGCGACAAAagcgagtgggagg
gagagggggagggcgagggcaggtgGGCTGGTTGAagcgctgccctccct
ccctgtgcgCCTTGGAGAAGGTACAAGGAGCGATCCGAACGTTGGGACTG
ACGGTTGGGGATATTTCGGTGTTTTTGGGTCCAGATTGGATACTCCCGAC
GGGCGGACTGAAAGAACGGAGGCGAGAGATAAACAAAGAGAGACAACGAT
TGAGAGGGCTGGTGGTTGCCCTCATGACACGGCAGGAGGAGCTAAGACAG
GAGGTGCGAAGACGGCAAGCGCGGAAAGCCACGGTGACTGAcgaagaggt
agagggcgaggaggaggaggaattgtaTGTGAGCATGGGGAAAATCCGAA
AGGGGGGCTGCAAACGGAAACGGCGACTGCGAAGCCGCAACCTGGTGGTC
GACCGTTGGTTAATGGATGAGGACGGGGATGACGCGTTTGCCGACTTGGA
GGATTTCATTATGCCTGATGAGTATACGTAA
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Synonyms
Publications