rna838, rna838 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna838
Unique Name	rna838
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1524
Alignment location	CM002456.1:536826..539191 +

Link to JBrowse

Properties


Property Name	Value
Product	major facilitator superfamily
Orig transcript id	gnl\|cribi\|Naga_100017g29.329.mrna
Orig protein id	gnl\|cribi\|Naga_100017g29.329
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:536826..539191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g29	gene802	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna838	rna838-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29831.1	cds838	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:536826..539191+
coding sequence from alignment at CM002456.1:536826..539191+

mRNA sequence

>rna838 ID=rna838|Name=rna838|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
ATGACAGAAAGTAGAAAAAACCTCAAGCATTTTAATGCTGCTAATGCTGG
TCCATCTTTGTCACAGGCCGAAAGACAATCTCTAAAGGATACTTTGATGC
GCATGGTGATACTACGGGCATCCCGGTCTGGTCGCCGGTTCATCTCAACG
CCTTCCCTTACGAAGATGTTGTTGCGGTGGTTTTTGGCTGTACTTCCCCT
CTTTTTATCATCATTGAGTACCCATAGCTTTGTCCATAACCCAAAAGTAC
TCATGAAGCGAGGAATGAGGAATTTATCAGGTGATCTTGCTGCGGCCCGC
GACAGCGGAAGCACCGGAAACGAGGGCATGCTGAACCCTCTCTTAAGCAC
GGTAGAAGTAAGCAAGACGATTGAGATACATGCAATGACCAAAAGTATGG
AGGCAAGGGGTGAAGCAGTCGTCTCCTTGTGTGTGGGAGAGCCAGATTTC
CCCCCGCCTGCGGAGGTAGTTGAGGCGACAGTGCAAGCTCTTCGAGAGGG
CCACACTCGATATACTGCTGTGACCGGAGATGCCGCACTCAGGCAAGCTA
TTTGCAAAGACCTGGAGAAACGCAAAGGTGTAAGATACGCGGCGGAGGAA
ATCATCGTGGGAAATGGGGCCAAGCAAGAGGTGTATCAGGCGGTCCTCGC
CTTGTGTCGCCCTGGAGATGAGGTTATCATCCCTGCGCCATACTGGCCAA
GCTATCCGGAGATTGTCAAGCTGGCAGGCGCGACGCCGATCATCCTCGAG
ACGACGGCCTCGAGCGGATTTTTGTTGGACCCTGAGGCCCTCTCGCAGGC
AGTGACTCCCCAAACACGCATGTTTATCTTCTGCAACCCCAGCAACCCCA
CGGGTGCCGTCCATCCCCCGGAACTAGTCGACGCGCTGGGAGATGTTTTG
AAACGTCGTCATGCCAAGCACGTCTGGGCCCTGTCGGACGAAATTTACGA
GCGCATTATTTATGATACTCCTCATAAGAGCTTGGCAGCCGTCCCGGGGC
TACGAGATCGGGTTTTGTTGATTAATGGCTTTTCAAAGGCCTACGCCATG
ACGGGTTACAGGCTGGGTTACTTGGCAGGTCCCTCACCTGTCATAAAAGG
GTGCACCACCTTGCAATCTCAGATAACTTCCTGCGCCAGCAGCATCGCCC
AAAAGGCGGGCATTGCGGCGTTGCAGTTACCGGCCACAACGATGGCACCC
TCCGTCGAGATAATGCGCAAGAAGCGGGATCGAGTCATGTCCGCTCTCGG
ACAAATTCCACGTGTCGCTTGCTCGGTTCCTCAGGGTGCATTTTACGTGC
TGCCTGACGTATCGTGGTACTACCACAAAAAAACTCCGGAGGGGCAGATC
ATTCGGGACGGGCATGAACTTTGTATGTATCTGCTTAAGGAATACAAGGT
GGCGCTTGTTCCCGGCGAGTCCTTTGGCGCTCCTACCACTATTCGAATTT
CTTACGCCACATCGGAAGCCGACCTTGATATAGCGCTAACACGACTGGCC
GAGTGCCTTGCTTCTCTTACTTAA

protein sequence of rna838

>rna838-protein ID=rna838-protein|Name=rna838|organism=Nannochloropsis gaditana|type=polypeptide|length=618bp
MTIPAAGTTLVLPEVGTSLEETGVSEIVVHRSDLTCCEESKTPAEWAAEG
NRHADSGRENLPCKDAGNHASGDTPCDKAHSLDQESHRMSEVDDLLNSGV
KPSTLNLITFVLACANAADAVEVLAVGFFLTVYRNADGSELSSADKSFLT
GSIYMGMLLGGVVGGWLSDVAGRKGTLTFSLALNGLAGVISASSSNLEWL
ITFRVLAGIGVGASVPCLFTLGAELFPVQTRGVYLSYVASFWMVGSIYAA
GAAWIILGLDFDGERILPGWTWRPFVVAAALPVFLTLISACFLLPESPRY
LIQRGRYTEAAKNLRRLTGRHVSPESLVGGGEDDTLTDDEANPLTTDGML
LPTAAKDEENGTSLSSAPSRSAATPTVSPRQRGKAWLKVLESVAGVFRGS
LRLTTLRLMVVWFTLCFGTYGLSTWISTIFKVIGIKNEFLPTFLFALANL
PGNIASFVLIERLGRKRLLAFSMLLAAGSAFVFAFTSTRATWLAVVAACC
FQAFSVAGWNALDALSTESFPTAMRTTGMGLLSGTGRFSSLIAMFVDGSL
EHSVALLFTVTGTTTVLGALTAFWLPYEPTGQSLDGLVGRGGKQGKERRR
GSKVWRSFEPVNVGDEGL

mRNA from alignment at CM002456.1:536826..539191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna838 ID=rna838|Name=rna838|organism=Nannochloropsis gaditana|type=mRNA|length=2366bp|location=Sequence derived from alignment at CM002456.1:536826..539191+ (Nannochloropsis gaditana)
TTTCCCATGGTCAAGCACTGTGATGCGCATTTAAATCTTTTAATTTGAGT
CGGAAACTTGACGCGCCACTTTTCCTGAAGTCTCTAAACTGCTAGATCTT
AGCAGTCCTGAATCCACGCTCCAGGCTTCCTGAAGGCGTGAGAGACGTCA
TCGAACCAAGTAGTTCAAACTCCCTCTAACAAGCGCCCCCATTGCATGAC
AGGGCGCGTCTTTCATGACCATACCTGCCGCAGGAACAACCTTAGTACTG
CCAGAAGTTGGTACATCACTTGAAGAAACAGGCGTGTCAGAAATTGTGGT
GCACAGATCGGACTTGACTTGTTGTGAAGAAAGCAAGACGCCAGCAGAGT
GGGCGGCCGAGGGGAACAGGCACGCTGACAGTGGCAGGGAAAATCTCCCG
TGCAAAGACGCCGGCAATCACGCAAGCGGGGACACTCCTTGTGATAAGGC
TCATAGCCTTGACCAAGAAAGCCATCGCATGTCAGAGGTGGACGATCTTT
TAAATTCAGGTGTAAAGCCCAGCACTTTAAACCTCATCACCTTCGTTCTG
GCCTGCGCCAATGCTGCAGATGCTGTTGAGGTCCTGGCAGTGGGCTTTTT
CCTGACCGTGTACAGAAACGCGGACGGTTCAGAACTTTCGAGTGCCGATA
AAAGCTTTCTGACCGGGTCGATATACATGGGCATGCTTCTGGGTGGGGTC
GTGGGAGGTTGGCTCTCCGACGTGGCGGGCCGGAAGGGGACCTTGACTTT
TTCTTTGGCTTTGAATGGTCTGGCCGGCGTTATCTCGGCCTCGTCCTCTA
ATCTGGAGTGGCTTATCACCTTTCGTGTGCTCGCAGGTATTGGCGTAGGA
GCATCTGTACCGTGCCTTTTCACACTGGGAGCCGAACTTTTCCCGGTGCA
GACGAGGGGGGTGTATTTGTCCTACGTAGCGAGCTTCTGGATGGTCGGCT
CGATCTATGCGGCGGGCGCGGCTTGGATCATCCTGGGGCTGGACTTCGAT
GGTGAGAGGATCCTGCCAGGGTGGACCTGGCGCCCCTTCGTGGTTGCGGC
GGCCTTGCCGGTCTTCCTGACCCTGATCTCGGCATGCTTCCTCCTACCCG
AGTCCCCGCGCTACTTGATCCAGAGAGGCCGGTACACAGAAGCAGCCAAA
AACCTACGTAGACTCACGGGCCGCCACGTCAGCCCGGAATCTCTCGTGGG
TGGCGGCGAAGATGACACCCTGACGGACGATGAGGCCAACCCCTTGACCA
CGGACGGCATGCTGCTTCCTACGGCGGCCAAAGACGAAGAGAATGgcacc
tccctgtcctccgcTCCGTCAAGAAGCGCTGCAACTCCGACGGTTTCCCC
CCGCCAGCGAGGCAAGGCTTGGCTCAAGGTGCTCGAGAGCGTGGCTGGAG
TTTTTCGGGGGTCCCTGCGGCTGACCACTCTGCGTTTGATGGTCGTATGG
TTCACGCTTTGTTTTGGAACCTACGGTTTGAGCACCTGGATCAGCACCAT
CTTTAAAGTGATCGGCATCAAAAATGAGTTCCTGCCTACTTTCCTTTTTG
CCCTGGCTAACCTTCCTGGAAATatcgcctccttcgtcttgaTCGAGCGC
CTGGGCCGAAAAAGGCTGCTTGCATTCTCCATGCTCTTGGCCGCCGGTTC
GGCCTTCGTTTTTGCATTTACCAGCACTCGAGCCACGtggctggcggtgg
tggcggcgtgTTGTTTCCAGGCCTTCTCGGTGGCCGGGTGGAACGCCTTG
GACGCTTTGTCGACCGAATCTTTCCCAACAGcgatgaggacgacgggCAT
GGGGCTGCTGTCAGGGACGGGAcgattttcttccttgatTGCCATGTTTG
TCGACGGCTCTCTCGAGCATAGCGTTGCCTTGCTCTTTACAGTGACGGGA
ACCACCACAGTCTTGGGCGCGCTGACGGCTTTTTGGCTGCCGTACGAGCC
CACAGGTCAATCATTGGACGGactggtgggaaggggggggaaacaagGTA
AGGAAAGGCGAAGAGGCAGTAAAGTGTGGCGAAGCTTTGAGCCCGTAAAT
GTGGGTGACGAGGGACTTTGAAGCTAGCACACGTTCAGAAATGAGAGAAA
GGAGCGGACGTGAAGAGGCTGCAGGCGATGACACACACAATACGGTATAA
TAGGATGGGAGCTTGCGTCCAGCGGGAGTAGTTTATGTATGATACTTAGA
AAGCAGTCTCGTCGCAAGATCTGCGATGATGCTTGGTGAACGGCTGAGGA
CTTTGTCAATGCGATGTAAAATGCTACTGCAAATGTAAGTTGCTCTAGAT
GACTGCCCCACCCAGGCAAGTGTGAAAGGGGATAAAGAAAAAGTTACACG
TCAATTGTTGACATTT

Coding sequence (CDS) from alignment at CM002456.1:536826..539191+

>rna838 ID=rna838|Name=rna838|organism=Nannochloropsis gaditana|type=CDS|length=1857bp|location=Sequence derived from alignment at CM002456.1:536826..539191+ (Nannochloropsis gaditana)
ATGACCATACCTGCCGCAGGAACAACCTTAGTACTGCCAGAAGTTGGTAC
ATCACTTGAAGAAACAGGCGTGTCAGAAATTGTGGTGCACAGATCGGACT
TGACTTGTTGTGAAGAAAGCAAGACGCCAGCAGAGTGGGCGGCCGAGGGG
AACAGGCACGCTGACAGTGGCAGGGAAAATCTCCCGTGCAAAGACGCCGG
CAATCACGCAAGCGGGGACACTCCTTGTGATAAGGCTCATAGCCTTGACC
AAGAAAGCCATCGCATGTCAGAGGTGGACGATCTTTTAAATTCAGGTGTA
AAGCCCAGCACTTTAAACCTCATCACCTTCGTTCTGGCCTGCGCCAATGC
TGCAGATGCTGTTGAGGTCCTGGCAGTGGGCTTTTTCCTGACCGTGTACA
GAAACGCGGACGGTTCAGAACTTTCGAGTGCCGATAAAAGCTTTCTGACC
GGGTCGATATACATGGGCATGCTTCTGGGTGGGGTCGTGGGAGGTTGGCT
CTCCGACGTGGCGGGCCGGAAGGGGACCTTGACTTTTTCTTTGGCTTTGA
ATGGTCTGGCCGGCGTTATCTCGGCCTCGTCCTCTAATCTGGAGTGGCTT
ATCACCTTTCGTGTGCTCGCAGGTATTGGCGTAGGAGCATCTGTACCGTG
CCTTTTCACACTGGGAGCCGAACTTTTCCCGGTGCAGACGAGGGGGGTGT
ATTTGTCCTACGTAGCGAGCTTCTGGATGGTCGGCTCGATCTATGCGGCG
GGCGCGGCTTGGATCATCCTGGGGCTGGACTTCGATGGTGAGAGGATCCT
GCCAGGGTGGACCTGGCGCCCCTTCGTGGTTGCGGCGGCCTTGCCGGTCT
TCCTGACCCTGATCTCGGCATGCTTCCTCCTACCCGAGTCCCCGCGCTAC
TTGATCCAGAGAGGCCGGTACACAGAAGCAGCCAAAAACCTACGTAGACT
CACGGGCCGCCACGTCAGCCCGGAATCTCTCGTGGGTGGCGGCGAAGATG
ACACCCTGACGGACGATGAGGCCAACCCCTTGACCACGGACGGCATGCTG
CTTCCTACGGCGGCCAAAGACGAAGAGAATGgcacctccctgtcctccgc
TCCGTCAAGAAGCGCTGCAACTCCGACGGTTTCCCCCCGCCAGCGAGGCA
AGGCTTGGCTCAAGGTGCTCGAGAGCGTGGCTGGAGTTTTTCGGGGGTCC
CTGCGGCTGACCACTCTGCGTTTGATGGTCGTATGGTTCACGCTTTGTTT
TGGAACCTACGGTTTGAGCACCTGGATCAGCACCATCTTTAAAGTGATCG
GCATCAAAAATGAGTTCCTGCCTACTTTCCTTTTTGCCCTGGCTAACCTT
CCTGGAAATatcgcctccttcgtcttgaTCGAGCGCCTGGGCCGAAAAAG
GCTGCTTGCATTCTCCATGCTCTTGGCCGCCGGTTCGGCCTTCGTTTTTG
CATTTACCAGCACTCGAGCCACGtggctggcggtggtggcggcgtgTTGT
TTCCAGGCCTTCTCGGTGGCCGGGTGGAACGCCTTGGACGCTTTGTCGAC
CGAATCTTTCCCAACAGcgatgaggacgacgggCATGGGGCTGCTGTCAG
GGACGGGAcgattttcttccttgatTGCCATGTTTGTCGACGGCTCTCTC
GAGCATAGCGTTGCCTTGCTCTTTACAGTGACGGGAACCACCACAGTCTT
GGGCGCGCTGACGGCTTTTTGGCTGCCGTACGAGCCCACAGGTCAATCAT
TGGACGGactggtgggaaggggggggaaacaagGTAAGGAAAGGCGAAGA
GGCAGTAAAGTGTGGCGAAGCTTTGAGCCCGTAAATGTGGGTGACGAGGG
ACTTTGA

Synonyms

Publications