rna8374, rna8374 (mRNA) Nannochloropsis gaditana

Overview
Namerna8374
Unique Namerna8374
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3078
Alignment locationKK037248.1:517741..518514 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100118g11.2756.mrna
Orig protein idgnl|cribi|Naga_100118g11.2756
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:517741..518514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100118g11gene8114Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22329.1cds8347Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8374rna8374-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8374 ID=rna8374|Name=rna8374|organism=Nannochloropsis gaditana|type=mRNA|length=3078bp
CGAGAGCGATACGAGAGAGCTTACCACCTCAACTCGCATGTCTCTTCTAC
GCCGACGGCAGCCATGTCCCTGCGACTTGCACGCCCCATCGCCACGCCTC
ACGCCAACTTTTTCCTTGTCACAGCGCGACGCTTCCGGGCGAGACACACT
TTGGTAAATGTACGGCGTCGATTGAACGGCCGCATTGGGGCTCGTCTTCG
GTCGCGTGAGCTCAGCCAGCAAGCCACCTGATTTCCTTCTTGAATTACCG
TGTTCTTGTTCCAGCACCCGTCAGGAACGGGGGATATTCACCCTCACAAA
CTTTACTTGGAAAAAAACCATCTCCCCCACGAGTGCCATTGCGTGATCTT
GTGATTATTTGTCGTCTCTGTCTTTCAGGGAAGAGGAGTTTCATGAGTGC
ACGAGGCATGAAGGGTCAGGGGGTGGACGGTAGCCGCGGGGGCGGAATAA
ACGACCTCGGAAGTCGGGCGGAGCGACAAAATTCGAGTGTCGGGAATGAT
TATAGAAAGAGCAGCAATGGAAATGACGGTAGGGATGGGAGGAGCGCCCA
TCTCGGCCGAGACAAGAAGTCACGAAATTCTGCCTCGGGAGCCCTGACGA
GGCCTGCGTCCAACACGGGCAATGGGGGCCAGATGGAAGCCCCAGCATTC
CAACAAGCAGACGACGAATTGACGGAGACATTGTTCAATCAATTCGACAA
CTACGCAGACTACCTTCCTATGGACGACGTGGTTGCCATGATGTCGGGAT
GGCAAGAGGCAGGGGGCGAAGGAAGGGGGGGAAACGGGGGCGAGCGGTCT
CTGAGTGACGACGGACAGATGCACTTACAGACCCCGCTCGATGATGAGGT
ACCCTTGCCCGCCGCTGTACAAGGCATGCTATCGCACAGTGGGGCCTCGG
AAGAAGGAGTGGTGAGTGCGGGGTTGAAAAGCGGGGGCAGCCAAGGGAGC
GGGTTTGGAGTCTCGGATGCCAGCAGCAGCTTAGCCGACGACTTCGATGA
CGACGATGGAGACGGTGATTCCCGCTTAGCCATCTCAGTGGGAAAAGGAA
GCAAGCGCCATGAGGAGAGAAAAGGAGGAAGCAAGAAGTCACATCCGAGG
GGGGGACATGGTGGGGTCCTGGAGGGGGAGGGGGGAGAGGGCGCTGGGAA
GGCGAGCGTGGATTCCCAGAAGCTGCGGAACCGCGAACATGCCCGGAACA
CGCGACTCCGGAAGAAAGCCTACATTGAGACGCTACGCCATCAACTGCAG
TCTCTGAGCGATGCCAAGGACAAGGAGGACAAGACGGAGCTTGTCTCCCA
TGTCCGGAGCCTGGAGGGCCGCAAATTGAAAAAGGCGCGGCTGCAGACCT
TTTTGCTCTACCGAGCACGGGGCGAACTGGACCGGAGAAAATGGGCGGTC
CTCCTCGCAGAAGATTTCGTCTTGAAGTTGCCCTTGACGCCCTACCGTTA
CTTCCCCGCGGGCGACGTGGAACAGCACGCACGCTACGTCCGAGGGATCG
ACGCGACCATCCGAGACACGGCCTCTTTCACCGTCCTCATCGACTCGCTG
TCCCGGACCTACCGGGAGCGTGTCCGTGTCCAATTTTATTCGGAGGCGGA
CTACATCGTCATCGGCACCGGGCCCACACTCATGTGTCGGTGGACGATGC
GGAGTGAGAACGCGGTCGCCTGCGGGTGCCAGACGGAATTGGAGCTCTGC
GGCATGCTTCAGGCCGAGTTTGAACCCAGAGAGGTGAAGCTGAAGAGGCT
GAACGTGATGTTTGACGTGATGGGCTTGATGCAGCAGCTCCGACGAATGG
GGGGAGGAGCCCTCTTTCAAACCGCGCCGTCCACGTTGCAGATGGCCGAA
GACCCCACGGAGGAGCCCCGGATCGTCTTTGCCCTCCAGGTCCCTTTCCG
AATCCGGAGTATCAACGAGGCCTGGATGATGCACTACGGCGTCACGGTGG
AAGATTGCCAGAACCGATGCGTGGTCTTGGAACGGAACCCGTTGTGCCCC
GTCCCAGGCGCGGGGGGAGGGCGGGAAGGAAGAGGTGCAGGGGAGGCGGA
GGCGCCGGTGGATTCGGCCTGGCAATTCATCCAATTTGCCTACGAATGCA
TCGCCAAGCAGTTGTCCCACTCTTTGATCGTCCTGTACGAGACCAAAACT
CAGGGTCCGATCGGGGCCCGTCTCCGGCTCTTCCCCGTCTACACGGGGGG
GTACGTGACTCACTACATGGGGGGGCTCACATCCCTGCACGACCCCAGTT
TTCCCAACGACTACCCCACGGTGCTGGCATTCAGATGACGGGGAGGGAGG
GAGGGAGGGAGGGCGGCGCGGTTGTATCTTAAGTGGGAGAAGGACTTCAT
CCAGACGGGGATGTATTCGGCGTACACGACCCAAAAAGCCCGGGGCAAGA
ATAGAGTCGTCTGAGATATTTTACATGTTGTACATCTGAAGAAATTATGC
CCGAGAAGGCGCAATGCTCATGAAGAAGTCTTGCCGTGGAAGGAGGAAAC
ATAACCTAGGACCAGGGGGAGCACCCAGCAGCTCTTACAGTGAAGGAGCT
CACTCGTCAAGCACACTCATGCTCGACGCATGCTGTCCTCCGTGTCCGCT
GCTCGCCTCTACTTCCCGCCCCTGCTCCGTCGAGACCCCTTTATCTTGTC
GCGCGTGGCGAGGACAGGCGGAAATCCTGGGCTAAGAGCCCCGGGAGGTG
GACTCGGAGAGGGCGCGAGACGAGCCCGGCAGGGCGGTACTGGGGTGGAA
AAACGGTCAAGCGATTCAACATGACGTGCGTGCACCTCGGAAGAGGCGTC
GGTCGAGTCAAGTTGAGTCGCTGCGACGAGGGAGGGGGAAGGGAATCGGA
GGGCTGAAAGAAGCGACAGGAGGCCTGTTGTTGACAGAAGGGGGGTAGTG
CGATTTGGTTAAGGAAAAACTAGCATAGAGAAATGCAAGGTAGATCACGG
GAATGATACTGCCATCGGAAGCTTTGCCGCGTTTCAACGTTTTTCAACGG
TCCAAACAGTGAACAAGAATAAAGTCATTAAACAAATATGGTAAGCAAAT
TCAATGCGGACACCTCCACGCAATTTTG
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protein sequence of rna8374

>rna8374-protein ID=rna8374-protein|Name=rna8374|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MSTGDVAVLLGHLENRVKTLLNRLTQLAEHLRQILADPVHARPDWPSIVT
HFRVSETQLRQFHRDVQPFLQYFVFRPASNPAKPPPPQADIPLMLSTRSY
LEMEGEEVQLQAAYWDRAHAREHVNHGRDIQEKEKDGEGQGGVEKVIEGF
NDALERVDVVCDWLSAEFRDKIKSFKSPGLETPAWRDQAATVAEKGFRYL
EAVTDGHESYAPLAR
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mRNA from alignment at KK037248.1:517741..518514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8374 ID=rna8374|Name=rna8374|organism=Nannochloropsis gaditana|type=mRNA|length=774bp|location=Sequence derived from alignment at KK037248.1:517741..518514- (Nannochloropsis gaditana)
TTTCACAGGCCCTTACTCTCGGACGATGTCAACTGGGGACGTGGCGGTAT
TGCTTGGCCATTTGGAAAACCGTGTCAAAACTTTACTTAATCGTCTCACG
CAACTCGCTGAGCACTTGAGGCAAATATTGGCCGACCCGGTGCACGCCCG
TCCCGATTGGCCGAGCATCGTCACACATTTTCGCGTGAGTGAGACGCAGC
TACGGCAATTTCATCGGGATGTACAACCTTTCTTGCAGTACTTCGTCTTT
CGCCCGGCCTCCAACCCCGCCAAGCCGCCGCCCCCTCAGGCGGACATCCC
ACTTATGCTATCCACCCGGTCCTACCTCGAGATGGAAGGCGAAGAAGTAC
AGCTTCAGGCAGCATATTGGGATCGAGCGCATGCTAGAGAGCACGTGAAT
CATGGGAGAGACATCCAGGAAAAGGAAAAGGATGGAGAGGGGCAAGGCGG
GGTTGAGAAGGTAATCGAAGGTTTTAACGATGCCCTTGAACGAGTAGATG
TGGTGTGCGACTGGCTATCCGCCGAGTTCAGGGACAAGATAAAATCGTTC
AAGAGCCCTGGTCTTGAGACACCTGCGTGGAGGGACCAGGCGGCAACCGT
CGCGGAGAAAGGGTTCAGGTACTTGGAGGCCGTGACCGACGGACACGAAT
CCTACGCTCCGCTCGCAAGATAGCAATCGTGGAAGGGATGATGCTGGTAC
AGGGCACGTTGACGCCGGTGTCAAAACGAAAGAAGTGCATTGCAAGGCTA
GTAAAAACAAAATTGCGTGGAGGT
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Coding sequence (CDS) from alignment at KK037248.1:517741..518514-

>rna8374 ID=rna8374|Name=rna8374|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at KK037248.1:517741..518514- (Nannochloropsis gaditana)
ATGTCAACTGGGGACGTGGCGGTATTGCTTGGCCATTTGGAAAACCGTGT
CAAAACTTTACTTAATCGTCTCACGCAACTCGCTGAGCACTTGAGGCAAA
TATTGGCCGACCCGGTGCACGCCCGTCCCGATTGGCCGAGCATCGTCACA
CATTTTCGCGTGAGTGAGACGCAGCTACGGCAATTTCATCGGGATGTACA
ACCTTTCTTGCAGTACTTCGTCTTTCGCCCGGCCTCCAACCCCGCCAAGC
CGCCGCCCCCTCAGGCGGACATCCCACTTATGCTATCCACCCGGTCCTAC
CTCGAGATGGAAGGCGAAGAAGTACAGCTTCAGGCAGCATATTGGGATCG
AGCGCATGCTAGAGAGCACGTGAATCATGGGAGAGACATCCAGGAAAAGG
AAAAGGATGGAGAGGGGCAAGGCGGGGTTGAGAAGGTAATCGAAGGTTTT
AACGATGCCCTTGAACGAGTAGATGTGGTGTGCGACTGGCTATCCGCCGA
GTTCAGGGACAAGATAAAATCGTTCAAGAGCCCTGGTCTTGAGACACCTG
CGTGGAGGGACCAGGCGGCAACCGTCGCGGAGAAAGGGTTCAGGTACTTG
GAGGCCGTGACCGACGGACACGAATCCTACGCTCCGCTCGCAAGATAG
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Synonyms
Publications