rna8372, rna8372 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8372
Unique Name	rna8372
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3014
Alignment location	KK037248.1:511745..514019 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100118g8.2750.mrna
Orig protein id	gnl\|cribi\|Naga_100118g8.2750
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:511745..514019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100118g8	gene8112	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8372	rna8372-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22323.1	cds8345	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:511745..514019+
coding sequence from alignment at KK037248.1:511745..514019+

mRNA sequence

>rna8372 ID=rna8372|Name=rna8372|organism=Nannochloropsis gaditana|type=mRNA|length=3014bp
GTCCGCGTCTTTGCACGCCATTTTTTTCGTGTTGGGAGCACGGTGGACAG
CTGGAGAAGTGGGGGATGTTCTGCGGCAGGTTGTCGGTTTGTCAGGCGCT
TTCCGTGCGTGGTTACTTGGGCATGTGCCTTGACATCTTCCGGTGTCAAG
GACAATTCAAGGTGGAGGAACCTGCAGGCACACGGATGTGATTCGCCCCT
GAATTCCCCACCTTTTGGGCAGTAAGGACATGAACAACAATGCAGACGAC
CCCAGGGATTCGATGCTTGCGTGATGTTGTCCTGGTGGACTTTCAGGGGC
GTGACATGACTTTGACTTTGCCAACTAAACCGCAGAGTAGCCAGAGGGAG
GGTTCCAGATATGCTATGACGATGCCCTAGACCTCCTCGACCGCAGCCTT
TTACTTTCGTCTTCTTTTCAACCCCGCTCAGTTTCTCTTACCATGTCCCT
TATTTTACATGTGCACAGGGCTTGGATGCCCCGCGGGTGCGGGTGATCAA
CGCTACGTGGATTGTTGTATCTTCCTGAGATTCTTATTTATCATCGGCGG
TTCCACCTTCATTCGATCGGCTTGCACACCTGACCGTGTCAGCAACAGCA
ACTTGACAAATATTCTAGCTGGACATTAGTTTGAAGGAGCTAGCAAGACG
GTAGCGGGACCATCTCCTTGTCGGTAGAGGTCGTTTGCATCGTCGTATCA
AGCCGTAAGTGTAGGCGTGCCAACTTCAAGGTAGGAGAAGGCAGCCCCTG
TCATGGCAGCAGTCGTTGCGACCGCTGCTTCAGCGACAAAGGCTCATAAT
GGGGGCTCGGGAGCGGGAGGACAAGGAGGAGAGAGCAATGGAATCACAGG
TGGAGCATACCAATCACTCAGTCGAGAAGACGGCGCTCCTCACAAGACCA
AGCATTGTTGGGAAGTAGAGGAGGAAGAAAAAGGAGAGGGCCGCAAGCCG
AGCCACAAACGACAACTATCTGTGTCCTCGAGCAACGTCCTAGATAATAT
GGGCTGCTTGGAAGATGTGGTACGGAGCAAAAGGGTGGTGGTGCTCCTAG
ACTATGACGGGACCTTAACCCCCATCGTCAGTGACCCGGCTAAAGCCTGG
CTCCCCGCGCAGACGCGGGACATCCTCGTCGAACTGGCGGAGCGTTGCGT
GGTGGGCATTGTGTCTGGGCGGTCCTTGTTGAAGGTGAAAGGCTTCGTGC
AGGTGCCTTCCCTGTTTTATGCCGGTTCGCACGGCTTTGATATTTGGGGT
CCGACTACTGAATCCATGCGGTACCAGGTGGCGGCAGACCAGCTCCCTGA
CCTGGCACGTCTAAGAGACACCTTGACAGAACAGCTGCGAGGCATTGAAG
GGGCGGCGGTGGAGGACAACGTCTTCTCGGTCTCGGTCCACTATCGTAAC
TGCGCCCCGGATGACGTGCCCGCCGTATACGAAATAGTGCAAACTGCACG
TCAAGCTTTTCCCTCCATTCGCTTTGGGACGGGCAAATGTGTCTTTGAAC
TGCGTCCAGACATCACCTGGGATAAAGGGAAGGCGATGGTGTGGTTGCTG
CAGGCGTTGGGTCTGTGGGAGGAGGAGGACGTGTTTGCCATTTATATCGG
GGACGACACGACGGATGAGGATGCCTTCCGCATTTTCCACCACGAGGACC
GGGCGGAAGGGATCGGGATCGTGGTTACGGCGGAGAACAAGCTGACGGGG
GCCAAGTACAGCTTGCGAAACCCGGAGGAAGTGGCGGTGTTTTTGGCGCG
CTTGGTGGAGCTGCGCGGTCATGTGCAGGCGGAAGGGAACAGCTCGGTCA
AAGACATCAAAATGGACTGGGCGAGGACCCCGTTGGCGGGGGCGTTTGAG
CCTGGGAACCCCGCGGGCGAGAAGAAGGAGAGGGAGCGTGGGGAAGATGG
GGGAGAGGGGGGGGTCGAACGGAATCAAGGGGAGGAGCAGGGACATTGAG
TGTACAAAGCGGGTAGGAGGGAAAGGCAGGAACATGGACGAGGGTGTCGA
GGGTGTAGTAGAGAGGAGAATGAAGAGTAGCGTGGGGCACGTACATCGTG
TGGGGGAGTGTACGAGTCCCTAGGCGGGTTTGGGCGGGGGGGCCTGAGCA
AGTAGGTAGGGTGAAGGTCTATGTCATAGACGCGTCTGTCTTGGCCATGT
ATTGGCCACGCGGGGACTCTCGGCAGTGCTGTGGACTCCTCCATCCCCCT
GGGGGATACCCCGGGAGTAGGGCCGCTTGAGGATTGTGTAGTTTGCCTGG
GAGGCAGGGGTCCGCTGTGCTGTGAATTTTCAATTTTGTAGGCTTTGGGT
AGAGGCACACCATAGGGAAAAGCCCAAACAGGATCTTCGCCAGCCCTGTC
CCGACTCAGTTTCGGCGTGGATCCGAATAGGGCAGGGGCTGGGAACAGGG
AGGGCGGGTGGAAGGGAGGGACGTACCGAACAAGACGACTGAGAATGACC
CGGACGAGGAGCAACCAGGCGTAATGGAAGGGTGTGAAACAAGTATTGTT
TACAAGATATCGCCATGAGAATGGGGGAGAGTGTGGAACAAGAAGAGTAG
AATAGAGAGGCGTCAATGGTCTCGTTACGCGCAAGTGCATGTGGATGGAG
AAGCCAGGGCAAAAGACAAAGGGGTATGGGAAATCAAGGCCCTGCAGGGA
TGAAAATTATGAGAGGTCTGGTTGGAGAGTACAAGGGGAGAAGGGGAAGA
AAGCGAATGGTGAGGATCGTTGTGTGGACCGCCCGCCTGTTGAACGTGTG
CCACGGAGCATCACGAGAAGCTGGCTCCTGCTGGGTTTCGGGAGAGAGAG
ATTGCTTCCCGCAAGCTTGGAAGGAAAAGTAATCAAGAACGGGTGCATAG
TGGCGATGTAGCACCGGGGGTCTCTCAAGGCCCGACACCGTTTTCCTTTT
GGGGTGAGTGAGCTTATCTTAGTGGTGTCGACCGTGCATAGGCGCAATAA
GCCTCTAGAACGGAGGTTACTGCCTTGGGGGAAGCCCGCTAAAACTCCTC
GGGATGGCCCTTTG

protein sequence of rna8372

>rna8372-protein ID=rna8372-protein|Name=rna8372|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MDGLYPLSESHKSLCASTMFAGMIIGQLVGGFLGDVMGVSRAFTLTIVLQ
VVAALGSTLVTPPQVYWQLAGARFVLGMGAGGVYPLAAAMSWNASAVARP
PPASERSGGHEGTEGSNVGPIEATLSADHGARHGCEGSKTDRPVALVFSM
QGVAFVTMNAVALVLALVLPLQADRSTGLQSWAPLTQALPDSSSTNRGAD
QFAFRFLLGLGALPGVVVLGATWWIHRRRSLGRTGPSLCRPKGFRKPARP
RLSLLDDVVEDTASGTEEEAQVALDPPSLPPSLPSSSCRPKEEELDAGAG
ARAASHALREALRDGRILRELVGCCLTWFLYDVCFFGNTLFQPVIGTALF
QDKSPSDVRRHDNGGDRGGGRSSGGGEDSTRPSFLLEAETSLILALIALP
GYFLSVWLIPRLGPRFVQIQGFVICATLYLVLAVCGERLTNAGQGGWALV
FFGLSFTFFNFGPGATTYLFPSKLFPREVKATLNGVAAAAGKVGGWVGGY
CFPLLLDAWTLEGVLGMCAAIALLGAGVTWGTLGWEGGREAVTEKGDKKT
GRGAGGASTPLLPENGEARADEKDGEDGTMITTV

mRNA from alignment at KK037248.1:511745..514019+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8372 ID=rna8372|Name=rna8372|organism=Nannochloropsis gaditana|type=mRNA|length=2275bp|location=Sequence derived from alignment at KK037248.1:511745..514019+ (Nannochloropsis gaditana)
ATGGAGCGACTTCCGGTACAGTGTGAGTTTCGAGATGAGAAACACGCCCT
CACGTTCCGTTTTTTTTACAATTCACAGAGATTCCATACTTCCAGACGAT
GCAGCCACAGCCTCCATAGCATTACTTCCCTACTGGAGGACGTCGTTGTG
CGGTTCTTGTCATGGCCTCTGACTTTTCCGCCTTCCgggcaccccccccc
cgccctcctcgaagCCCCGCACCGTGACTTATCCCAACCTGGAGGTCATC
ATTTCAAACCTGGGCAGCTTTTGCACGGCCTACAATATCGTCAACATCTC
CTTGGTCTTACTCTTGATGGATGGTCTCTACCCGTTATCCGAGTCGCACA
AGTCCCTGTGTGCCTCGACGATGTTTGCGGGTACGCGATGTTCAATATGt
gggccgcttcctcctttcccacctctgTCTAATTCCTCCCACGCACACAC
TGTGGCGGCTGCACCCTCACAGGTATGATCATCGGCCAACTTGTAGGGGG
CTTCTTGGGTGATGTCATGGGAGTGTCCCGTGCCTTCACCTTGACCATCG
TCCTTCAAGTGGTCGCGGCGCTGGGAAGCACGTTGGTGACGCCTCCTCAA
GTCTACTGGCAGCTGGCAGGGGCACGCTTTGTGCTCGGGATGGGTGCAGG
AGGTGTTTATCCACTGGCTGCGGCCATGTCTTGGAATGCATCGGCGGTCG
CGCgacccccgcctgcctctgAGAGATCGGGGGGGCACgaggggacagag
ggatCAAATGTAGGCCCCATTGAGGCTACCCTTTCTGCAGATCACGGTGC
TAGACATGGCTGTGAAGGAAGCAAGACGGACCGCCCGGTTGCGTTGGTCT
TCTCCATGCAAGGAGTCGCGTTCGTGACCATGAACGCCGTGGCACTCGTA
TTGGCCTtggtcctccctcttcaagccGACAGGTCCACCGGACTTCAATC
CTGGGCTCCTCTCACTCAGGCCCTCCCAGACTCATCGTCCACGAACCGGG
GGGCGGACCAATTTGCTTTCCGATTCCTGCTCGGCCTCGGGGCCCTGCCA
GGGGTCGTCGTCCTGGGCGCAACCTGGTGGATCCACCGGCGCCGTTCCTt
agggaggacagggccaAGCCTTTGCCGCCCCAAGGGCTTTCGCAAGCCTG
CTCGGCCCCGATTGTCCCTTTTGGatgacgtggtggaggacacggcctca
gggacagaggaggaggcacaggtggccctcgaccctccctccctccctcc
ctccctcccgtcctcctcgtgcaggccgaaagaggaggaattggacgCCG
GTGCTGGAGCCAGGGCAGCCTCGCACGCCCTGAGGGAGGCCTTGCGCGAC
GGAAGAATTCTTCGGGAGCTGGTGGGGTGTTGTCTGACGTGGTTTTTGTA
CGATGTGTGCTTCTTTGGGAACACCCTTTTCCAGCCCGTGATTGGGACGG
CTCTTTTCCAGGACAAGTCGCCCTCGGACGTGCGAAGACATGACAACGGG
GGTGAccgtgggggcgggcggagcagtgggggaggcgaggacagcacccg
cccttccttcttaCTGGAGGCTGAGACCAGCCTCATCCTTGCTCTCATTG
CCCTGCCCGGGTATTTCCTCTCCGTGTGGCTCATTCCTCGTCTGGGGCCC
CGCTTTGTTCAAATTCAGGGATTCGTCATCTGTGCCACCCTGTACTTGGT
GCTGGCCGTGTGCGGAGAGCGGCTGACGAACGCCGGACAAGGGGGCTGGG
CGTTGGTTTTCTTTGGATTGAGCTTCACCTTCTTCAATTTCGGACCGGGC
GCCACCACCTACCTCTTTCCTTCAAAGCTCTTCCCCCGGGAAGTCAAGGC
GACCTTGAATGGAGTGGCGGCAGCTGCGGGCAAGGTGGGGGGATGGGTTG
GAGGCTACTGCTTCCCTTTGTTGCTGGACGCGTGGACGTTGGAGGGAGTG
TTGGGCATGTGCGCAGCCATTGCCTTGCTGGGTGCGGGTGTCACGTGGGG
GACAttgggttgggagggagggagggaagcggtgacggagaagggagatA
AGAAGACCgggcggggagcggggggggccTCGACGCCCTTGTTGCCGGAG
AATGGTGAAGCCAGGGCGGATGagaaggacggagaggacgggaCAATGAT
CACGACTGTTTGACAGGCGATTTATTGCGAATAAGTGTAGAAAATGCCTC
CGAATGTTAAAATGAAGCTAATGCCCTCTGTAACATTGCACCTGAAGACT
GCCTTGTTGCAGACGTCGTGAGAAA

Coding sequence (CDS) from alignment at KK037248.1:511745..514019+

>rna8372 ID=rna8372|Name=rna8372|organism=Nannochloropsis gaditana|type=CDS|length=3510bp|location=Sequence derived from alignment at KK037248.1:511745..514019+ (Nannochloropsis gaditana)
ATGGATGGTCTCTACCCGTTATCCGAGTCGCACAAGTCCCTGTGTGCCTC
GACGATGTTTGCGGGTATGATCATCGGCCAACTTGTAGGGGGCTTCTTGG
GTGATGTCATGGGAGTGTCCCGTGCCTTCACCTTGACCATCGTCCTTCAA
GTGGTCGCGGCGCTGGGAAGCACGTTGGTGACGCCTCCTCAAGTCTACTG
GCAGCTGGCAGGGGCACGCTTTGTGCTCGGGATGGGTGCAGGAGGTGTTT
ATCCACTGGCTGCGGCCATGTCTTGGAATGCATCGGCGGTCGCGCgaccc
ccgcctgcctctgAGAGATCGGGGGGGCACgaggggacagagggatCAAA
TGTAGGCCCCATTGAGGCTACCCTTTCTGCAGATCACGGTGCTAGACATG
GCTGTGAAGGAAGCAAGACGGACCGCCCGGTTGCGTTGGTCTTCTCCATG
CAAGGAGTCGCGTTCGTGACCATGAACGCCGTGGCACTCGTATTGGCCTt
ggtcctccctcttcaagccGACAGGTCCACCGGACTTCAATCCTGGGCTC
CTCTCACTCAGGCCCTCCCAGACTCATCGTCCACGAACCGGGGGGCGGAC
CAATTTGCTTTCCGATTCCTGCTCGGCCTCGGGGCCCTGCCAGGGGTCGT
CGTCCTGGGCGCAACCTGGTGGATCCACCGGCGCCGTTCCTtagggagga
cagggccaAGCCTTTGCCGCCCCAAGGGCTTTCGCAAGCCTGCTCGGCCC
CGATTGTCCCTTTTGGatgacgtggtggaggacacggcctcagggacaga
ggaggaggcacaggtggccctcgaccctccctccctccctccctccctcc
cgtcctcctcgtgcaggccgaaagaggaggaattggacgCCGGTGCTGGA
GCCAGGGCAGCCTCGCACGCCCTGAGGGAGGCCTTGCGCGACGGAAGAAT
TCTTCGGGAGCTGGTGGGGTGTTGTCTGACGTGGTTTTTGTACGATGTGT
GCTTCTTTGGGAACACCCTTTTCCAGCCCGTGATTGGGACGGCTCTTTTC
CAGGACAAGTCGCCCTCGGACGTGCGAAGACATGACAACGGGGGTGAccg
tgggggcgggcggagcagtgggggaggcgaggacagcacccgcccttcct
tcttaCTGGAGGCTGAGACCAGCCTCATCCTTGCTCTCATTGCCCTGCCC
GGGTATTTCCTCTCCGTGTGGCTCATTCCTCGTCTGGGGCCCCGCTTTGT
TCAAATTCAGGGATTCGTCATCTGTGCCACCCTGTACTTGGTGCTGGCCG
TGTGCGGAGAGCGGCTGACGAACGCCGGACAAGGGGGCTGGGCGTTGGTT
TTCTTTGGATTGAGCTTCACCTTCTTCAATTTCGGACCGGGCGCCACCAC
CTACCTCTTTCCTTCAAAGCTCTTCCCCCGGGAAGTCAAGGCGACCTTGA
ATGGAGTGGCGGCAGCTGCGGGCAAGGTGGGGGGATGGGTTGGAGGCTAC
TGCTTCCCTTTGTTGCTGGACGCGTGGACGTTGGAGGGAGTGTTGGGCAT
GTGCGCAGCCATTGCCTTGCTGGGTGCGGGTGTCACGTGGGGGACAttgg
gttgggagggagggagggaagcggtgacggagaagggagatAAGAAGACC
gggcggggagcggggggggccTCGACGCCCTTGTTGCCGGAGAATGGTGA
AGCCAGGGCGGATGagaaggacggagaggacgggaCAATGATCACGACTG
TTTGAATGGATGGTCTCTACCCGTTATCCGAGTCGCACAAGTCCCTGTGT
GCCTCGACGATGTTTGCGGGTATGATCATCGGCCAACTTGTAGGGGGCTT
CTTGGGTGATGTCATGGGAGTGTCCCGTGCCTTCACCTTGACCATCGTCC
TTCAAGTGGTCGCGGCGCTGGGAAGCACGTTGGTGACGCCTCCTCAAGTC
TACTGGCAGCTGGCAGGGGCACGCTTTGTGCTCGGGATGGGTGCAGGAGG
TGTTTATCCACTGGCTGCGGCCATGTCTTGGAATGCATCGGCGGTCGCGC
gacccccgcctgcctctgAGAGATCGGGGGGGCACgaggggacagaggga
tCAAATGTAGGCCCCATTGAGGCTACCCTTTCTGCAGATCACGGTGCTAG
ACATGGCTGTGAAGGAAGCAAGACGGACCGCCCGGTTGCGTTGGTCTTCT
CCATGCAAGGAGTCGCGTTCGTGACCATGAACGCCGTGGCACTCGTATTG
GCCTtggtcctccctcttcaagccGACAGGTCCACCGGACTTCAATCCTG
GGCTCCTCTCACTCAGGCCCTCCCAGACTCATCGTCCACGAACCGGGGGG
CGGACCAATTTGCTTTCCGATTCCTGCTCGGCCTCGGGGCCCTGCCAGGG
GTCGTCGTCCTGGGCGCAACCTGGTGGATCCACCGGCGCCGTTCCTtagg
gaggacagggccaAGCCTTTGCCGCCCCAAGGGCTTTCGCAAGCCTGCTC
GGCCCCGATTGTCCCTTTTGGatgacgtggtggaggacacggcctcaggg
acagaggaggaggcacaggtggccctcgaccctccctccctccctccctc
cctcccgtcctcctcgtgcaggccgaaagaggaggaattggacgCCGGTG
CTGGAGCCAGGGCAGCCTCGCACGCCCTGAGGGAGGCCTTGCGCGACGGA
AGAATTCTTCGGGAGCTGGTGGGGTGTTGTCTGACGTGGTTTTTGTACGA
TGTGTGCTTCTTTGGGAACACCCTTTTCCAGCCCGTGATTGGGACGGCTC
TTTTCCAGGACAAGTCGCCCTCGGACGTGCGAAGACATGACAACGGGGGT
GAccgtgggggcgggcggagcagtgggggaggcgaggacagcacccgccc
ttccttcttaCTGGAGGCTGAGACCAGCCTCATCCTTGCTCTCATTGCCC
TGCCCGGGTATTTCCTCTCCGTGTGGCTCATTCCTCGTCTGGGGCCCCGC
TTTGTTCAAATTCAGGGATTCGTCATCTGTGCCACCCTGTACTTGGTGCT
GGCCGTGTGCGGAGAGCGGCTGACGAACGCCGGACAAGGGGGCTGGGCGT
TGGTTTTCTTTGGATTGAGCTTCACCTTCTTCAATTTCGGACCGGGCGCC
ACCACCTACCTCTTTCCTTCAAAGCTCTTCCCCCGGGAAGTCAAGGCGAC
CTTGAATGGAGTGGCGGCAGCTGCGGGCAAGGTGGGGGGATGGGTTGGAG
GCTACTGCTTCCCTTTGTTGCTGGACGCGTGGACGTTGGAGGGAGTGTTG
GGCATGTGCGCAGCCATTGCCTTGCTGGGTGCGGGTGTCACGTGGGGGAC
AttgggttgggagggagggagggaagcggtgacggagaagggagatAAGA
AGACCgggcggggagcggggggggccTCGACGCCCTTGTTGCCGGAGAAT
GGTGAAGCCAGGGCGGATGagaaggacggagaggacgggaCAATGATCAC
GACTGTTTGA

Synonyms

Publications