rna8371, rna8371 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8371
Unique Name	rna8371
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2028
Alignment location	KK037248.1:508475..511488 -

Link to JBrowse

Properties


Property Name	Value
Product	trehalose-6-phosphate phosphatase
Orig transcript id	gnl\|cribi\|Naga_100118g7.2745.mrna
Orig protein id	gnl\|cribi\|Naga_100118g7.2745
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:508475..511488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100118g7	gene8111	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22318.1	cds8344	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8371	rna8371-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:508475..511488-
coding sequence from alignment at KK037248.1:508475..511488-

mRNA sequence

>rna8371 ID=rna8371|Name=rna8371|organism=Nannochloropsis gaditana|type=mRNA|length=2028bp
ATGGCTCCGTTTGACATGCATCCGCTTGATCCCCTGTCAGCTGAAGAAAT
GAAGCAAGCCTCTGGCCTTATACTCGCAGCCTTCGAGAAAAGGTACCCCC
ACGCACGGTCTCCCATCTTCAACGCGGTGACGTTGGAAGAGCCTCTTAAA
AGCGAACTTTTGGCATTTGATGCTGGAAAAGGTCCTATCCCGGCGCGCAA
GTGTTTTGCCATTCTACAGCCGCCCCGCAGTCTGTACCAAGGAGAGGAGG
TGTATGCCATCGTGGAGGTAATCTTGAACTTGGATACGGGGGAGGTTGAG
GAATGGCAGCAGGTCCCTGCTGTTCAGCCCCTCATCACCCCTGAAGACTG
TTTCGAAGCGGAAAAGATTTGCAAGGCGGATGCCAAGGTATGCGAAATGC
TGGCATCGCGCTACGGCATCCATGACGTGCAGTCTGATGTGGCGTGCGAC
CCGTGGAGTGTCCACGAACATGGGAAATTGCCGGGGCGCCTGGTGCAGTT
GTTCTTGTACAAACGTCTCAGTCCCAATGACAATCAATACGCCCACCCGA
TCGACATGGTCCCTGTGCTTGATTTGGATCGAGCGTGCGTCGTGCACATT
GACGCCACGGAGTCCCCGCAACGGGTCAATGAGGTGCCCAACAACTACCA
CCATGCCCTGGTTGAAGGCGGCCTGCGTGCCGATCCTCCCAAGCCTTTGA
ACGTCGTCCAGCCCGAGGGGCCGTCGTTCACGGTGGTTGGCAACAAAGTG
AGCTGGCAGAAGTGGTCTTTTCGCGTAGGTTTTAATTTTCGGGAGGGCTT
GGTGCTCCATCAAGTCGGCTACCAGGACCTGGGCCGCCTGCGTCCCGTCC
TGTTCCGTGCGTCCATGGTGGAGATGGCCGTGCCCTACGCGGAGCCCCGG
GAACCATACCATCGAAAATGTGCTTTCGATGTGTCGGACTACGGACTGGG
AAACTGCACCACGTCCCTGTCCTTGGGCTGCGACTGCCTGGGGGCGATCA
AGTACTTCGACGCGGTCCTGAACGACCGGAGGGGCCACCCCGTGGTGGTG
CACAAGGCGGTCTGCATGCACGAGGAAGATGTGGGCCTGCTCTGGAAGCA
CGTGGACTACCGGACGGGGCACTCTGAATCGCGTCGCGCCCGGAGGCTTG
TAATCAGCTTCTTGACCACCGTGGTGAACTATGAATACCTGAACTACTGG
TACTTGTATCAAGACGGACATATGGAGTTCGAGATCAAGCTGACGGGCCA
GCTCTCCACCAACGCCTTGTCCCCCGGGGAGGAAATTCCCGCGTACGGCA
CCTTGGTCGACCCCGGCGTGAACGCCCAGCACCACCAGCACATGTTCTGT
GTGCGTCTCGACATGGCCGTCGATGACCCGGAGGGTGGGAAGCACTTGGA
GGTGGTGGAGCAGGAGGTGGTAGCTGCCCCCCCCCACCCGACCCTCAACC
CCTATGGGAACGGCTTCGTCGTCCGAGAGACCGTCCTCGAAAATGAGGAG
ATGGGCCAACGCGTTGCCTCGGCGGCCACGGCCCGGGCCTGGATCGTTCG
AAACCCGCGCGTTCAGAACCGGTTGGGGCAGCCGGTGGGGTATAAAATCG
TCGTACCCGAGAACCCTTTGCTCTTAGCTTCGCCGACCAGCTTGGTCGCC
CGAAAAGGCGCCTTTGCCTCCAAGAACATGTGGGTCACCCCGTACGCACG
CCAGGAACGGTGGCCTGCGGGAGAGTACCCCACCCAGTCGGAAGGAGGGC
AAGGGCTGCCTCAATGGGTCCGGCAGAAGCGATCGGTGCGGGACGCGGAC
GTGGTCGTCTGGCCCGCCTACGGCCTCACCCACGTGGTCAGGACGGAGGA
CTTTGGGACTATGCCGGTGGAAACGATCTCCCTCAAGTTGAAGCCCGTAT
CCTTCTTCGACAGGAACCCCGCGCAGGACCTGCCACCGGAAAAGAATGGC
GCGTCGATCGAGACTGGTGGGGCGGGAGAGGGAGTGCGTGGGTGCTGTGG
GGATCAGCCGCCAAGTCCGCCCAATTAA

protein sequence of rna8371

>rna8371-protein ID=rna8371-protein|Name=rna8371|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MAAVVATAASATKAHNGGSGAGGQGGESNGITGGAYQSLSREDGAPHKTK
HCWEVEEEEKGEGRKPSHKRQLSVSSSNVLDNMGCLEDVVRSKRVVVLLD
YDGTLTPIVSDPAKAWLPAQTRDILVELAERCVVGIVSGRSLLKVKGFVQ
VPSLFYAGSHGFDIWGPTTESMRYQVAADQLPDLARLRDTLTEQLRGIEG
AAVEDNVFSVSVHYRNCAPDDVPAVYEIVQTARQAFPSIRFGTGKCVFEL
RPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAFRIFHHEDR
AEGIGIVVTAENKLTGAKYSLRNPEEVAVFLARLVELRGHVQAEGNSSVK
DIKMDWARTPLAGAFEPGNPAGEKKERERGEDGGEGGVERNQGEEQGH

mRNA from alignment at KK037248.1:508475..511488-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8371 ID=rna8371|Name=rna8371|organism=Nannochloropsis gaditana|type=mRNA|length=3014bp|location=Sequence derived from alignment at KK037248.1:508475..511488- (Nannochloropsis gaditana)
GTCCGCGTCTTTGCACGCCATTTTTTTCGTGTTGGGAGCACGGTGGACAG
CTGGAGAAGTGGGGGATGTTCTGCGGCAGGTTGTCGGTTTGTCAGGCGCT
TTCCGTGCGTGGTTACTTGGGCATGTGCCTTGACATCTTCCGGTGTCAAG
GACAATTCAAGGTGGAGGAACCTGCAGGCACACGGATGTGATTCGCCCCT
GAATTCCCCACCTTTTGGGCAGTAAGGACATGAACAACAATGCAGACGAC
CCCAGGGATTCGATGCTTGCGTGATGTTGTCCTGGTGGACTTTCAGGGGC
GTGACATGACTTTGACTTTGCCAACTAAACCGCAGAGTAGCCAGAGGGAG
GGTTCCAGATATGCTATGACGATGCCCTAGACCTCCTCGACCGCAGCCTT
TTACTTTCGTCTTCTTTTCAACCCCGCTCAGTTTCTCTTACCATGTCCCT
TATTTTACATGTGCACAGGGCTTGGATGCCCCGCGGGTGCGGGTGATCAA
CGCTACGTGGATTGTTGTATCTTCCTGAGATTCTTATTTATCATCGGCGG
TTCCACCTTCATTCGATCGGCTTGCACACCTGACCGTGTCAGCAACAGCA
ACTTGACAAATATTCTAGCTGGACATTAGTTTGAAGGAGCTAGCAAGACG
GTAGCGGGACCATCTCCTTGTCGGTAGAGGTCGTTTGCATCGTCGTATCA
AGCCGTAAGTGTAGGCGTGCCAACTTCAAGGTAGGAGAAGGCAGCCCCTG
TCATGGCAGCAGTCGTTGCGACCGCTGCTTCAGCGACAAAGGCTCATAAT
GGGGGCTCGGGAGCGGGAGGACAAGGAGGAGAGAGCAATGGAATCACAGG
TGGAGCATACCAATCACTCAGTCGAGAAGACGGCGCTCCTCACAAGACCA
AGCATTGTTGGGAAGTAGAGGAGGAAGAAAAAGGAGAGGGCCGCAAGCCG
AGCCACAAACGACAACTATCTGTGTCCTCGAGCAACGTCCTAGATAATAT
GGGCTGCTTGGAAGATGTGGTACGGAGCAAAAGGGTGGTGGTGCTCCTAG
ACTATGACGGGACCTTAACCCCCATCGTCAGTGACCCGGCTAAAGCCTGG
CTCCCCGCGCAGACGCGGGACATCCTCGTCGAACTGGCGGAGCGTTGCGT
GGTGGGCATTGTGTCTGGGCGGTCCTTGTTGAAGGTGAAAGGCTTCGTGC
AGGTGCCTTCCCTGTTTTATGCCGGTTCGCACGGCTTTGATATTTGGGGT
CCGACTACTGAATCCATGCGGTACCAGGTGGCGGCAGACCAGCTCCCTGA
CCTGGCACGTCTAAGAGACACCTTGACAGAACAGCTGCGAGGCATTGAAG
GGGCGGCGGTGGAGGACAACGTCTTCTCGGTCTCGGTCCACTATCGTAAC
TGCGCCCCGGATGACGTGCCCGCCGTATACGAAATAGTGCAAACTGCACG
TCAAGCTTTTCCCTCCATTCGCTTTGGGACGGGCAAATGTGTCTTTGAAC
TGCGTCCAGACATCACCTGGGATAAAGGGAAGGCGATGGTGTGGTTGCTG
CAGGCGTTGGGTCTGTGGGAGGAGGAGGACGTGTTTGCCATTTATATCGG
GGACGACACGACGGATGAGGATGCCTTCCGCATTTTCCACCACGAGGACC
GGGCGGAAGGGATCGGGATCGTGGTTACGGCGGAGAACAAGCTGACGGGG
GCCAAGTACAGCTTGCGAAACCCGGAGGAAGTGGCGGTGTTTTTGGCGCG
CTTGGTGGAGCTGCGCGGTCATGTGCAGGCGGAAGGGAACAGCTCGGTCA
AAGACATCAAAATGGACTGGGCGAGGACCCCGTTGGCGGGGGCGTTTGAG
CCTGGGAACCCCGCGGGCGAGAAGAAGGAGAGGGAGCGTGGGGAAGATGG
GGGAGAGGGGGGGGTCGAACGGAATCAAGGGGAGGAGCAGGGACATTGAG
TGTACAAAGCGGGTAGGAGGGAAAGGCAGGAACATGGACGAGGGTGTCGA
GGGTGTAGTAGAGAGGAGAATGAAGAGTAGCGTGGGGCACGTACATCGTG
TGGGGGAGTGTACGAGTCCCTAGGCGGGTTTGGGCGGGGGGGCCTGAGCA
AGTAGGTAGGGTGAAGGTCTATGTCATAGACGCGTCTGTCTTGGCCATGT
ATTGGCCACGCGGGGACTCTCGGCAGTGCTGTGGACTCCTCCATCCCCCT
GGGGGATACCCCGGGAGTAGGGCCGCTTGAGGATTGTGTAGTTTGCCTGG
GAGGCAGGGGTCCGCTGTGCTGTGAATTTTCAATTTTGTAGGCTTTGGGT
AGAGGCACACCATAGGGAAAAGCCCAAACAGGATCTTCGCCAGCCCTGTC
CCGACTCAGTTTCGGCGTGGATCCGAATAGGGCAGGGGCTGGGAACAGGG
AGGGCGGGTGGAAGGGAGGGACGTACCGAACAAGACGACTGAGAATGACC
CGGACGAGGAGCAACCAGGCGTAATGGAAGGGTGTGAAACAAGTATTGTT
TACAAGATATCGCCATGAGAATGGGGGAGAGTGTGGAACAAGAAGAGTAG
AATAGAGAGGCGTCAATGGTCTCGTTACGCGCAAGTGCATGTGGATGGAG
AAGCCAGGGCAAAAGACAAAGGGGTATGGGAAATCAAGGCCCTGCAGGGA
TGAAAATTATGAGAGGTCTGGTTGGAGAGTACAAGGGGAGAAGGGGAAGA
AAGCGAATGGTGAGGATCGTTGTGTGGACCGCCCGCCTGTTGAACGTGTG
CCACGGAGCATCACGAGAAGCTGGCTCCTGCTGGGTTTCGGGAGAGAGAG
ATTGCTTCCCGCAAGCTTGGAAGGAAAAGTAATCAAGAACGGGTGCATAG
TGGCGATGTAGCACCGGGGGTCTCTCAAGGCCCGACACCGTTTTCCTTTT
GGGGTGAGTGAGCTTATCTTAGTGGTGTCGACCGTGCATAGGCGCAATAA
GCCTCTAGAACGGAGGTTACTGCCTTGGGGGAAGCCCGCTAAAACTCCTC
GGGATGGCCCTTTG

Coding sequence (CDS) from alignment at KK037248.1:508475..511488-

>rna8371 ID=rna8371|Name=rna8371|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at KK037248.1:508475..511488- (Nannochloropsis gaditana)
ATGGCAGCAGTCGTTGCGACCGCTGCTTCAGCGACAAAGGCTCATAATGG
GGGCTCGGGAGCGGGAGGACAAGGAGGAGAGAGCAATGGAATCACAGGTG
GAGCATACCAATCACTCAGTCGAGAAGACGGCGCTCCTCACAAGACCAAG
CATTGTTGGGAAGTAGAGGAGGAAGAAAAAGGAGAGGGCCGCAAGCCGAG
CCACAAACGACAACTATCTGTGTCCTCGAGCAACGTCCTAGATAATATGG
GCTGCTTGGAAGATGTGGTACGGAGCAAAAGGGTGGTGGTGCTCCTAGAC
TATGACGGGACCTTAACCCCCATCGTCAGTGACCCGGCTAAAGCCTGGCT
CCCCGCGCAGACGCGGGACATCCTCGTCGAACTGGCGGAGCGTTGCGTGG
TGGGCATTGTGTCTGGGCGGTCCTTGTTGAAGGTGAAAGGCTTCGTGCAG
GTGCCTTCCCTGTTTTATGCCGGTTCGCACGGCTTTGATATTTGGGGTCC
GACTACTGAATCCATGCGGTACCAGGTGGCGGCAGACCAGCTCCCTGACC
TGGCACGTCTAAGAGACACCTTGACAGAACAGCTGCGAGGCATTGAAGGG
GCGGCGGTGGAGGACAACGTCTTCTCGGTCTCGGTCCACTATCGTAACTG
CGCCCCGGATGACGTGCCCGCCGTATACGAAATAGTGCAAACTGCACGTC
AAGCTTTTCCCTCCATTCGCTTTGGGACGGGCAAATGTGTCTTTGAACTG
CGTCCAGACATCACCTGGGATAAAGGGAAGGCGATGGTGTGGTTGCTGCA
GGCGTTGGGTCTGTGGGAGGAGGAGGACGTGTTTGCCATTTATATCGGGG
ACGACACGACGGATGAGGATGCCTTCCGCATTTTCCACCACGAGGACCGG
GCGGAAGGGATCGGGATCGTGGTTACGGCGGAGAACAAGCTGACGGGGGC
CAAGTACAGCTTGCGAAACCCGGAGGAAGTGGCGGTGTTTTTGGCGCGCT
TGGTGGAGCTGCGCGGTCATGTGCAGGCGGAAGGGAACAGCTCGGTCAAA
GACATCAAAATGGACTGGGCGAGGACCCCGTTGGCGGGGGCGTTTGAGCC
TGGGAACCCCGCGGGCGAGAAGAAGGAGAGGGAGCGTGGGGAAGATGGGG
GAGAGGGGGGGGTCGAACGGAATCAAGGGGAGGAGCAGGGACATTGA

Synonyms

Publications