rna8359, rna8359 (mRNA) Nannochloropsis gaditana

Overview
Namerna8359
Unique Namerna8359
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length604
Alignment locationKK037248.1:471816..473826 -

Link to JBrowse

Properties
Property NameValue
Productcryptic tubulin
Orig transcript idgnl|cribi|Naga_100230g3.2211.mrna
Orig protein idgnl|cribi|Naga_100230g3.2211
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:471816..473826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100230g3gene8098Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22340.1cds8332Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8359rna8359-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8359 ID=rna8359|Name=rna8359|organism=Nannochloropsis gaditana|type=mRNA|length=604bp
CAGCGAGGGGACACGGGAAGCATCGCTTTCCAGTGCGTCTATGACCTTTC
CGTGATTTTTATTTTTGACCCGTGCTAAGGCAGTGCAGTAGCATTTGAAT
CATTTTTGTGATTCATTTTGGAAAAAAGATCGATGGATGGATTCGTGCAA
TGTACATTTTGAAACACAAGATGGCAGGCAGCGGCATCAAGTGCATGGCA
CAGATGTGCGACACGTCAACCCTCGCACTGCGTTTGGGATGGAAAAATAG
GAATATACGTGCAGGAAAATACTTGATAGTTTTTGGACAATGTGTTTTTT
CATCTTCGTCGTACCAGCTTGAAGACCATAACATGATAGAGGGCAGGGCA
TACGCGTATAGTTGTGTCCACCAAAGCTCCTGTGCCTTGGGGCTGAAGGG
AACTTTGTAAGAGCATTCTTGTGTTGACAATAAGATAATCCAGGTAAGCA
TAATGAGGAGGGAAACCCTTATGGTGTGGTAATGGAAGTCCATGAATGAA
ATTGGAGAATAGAGGTCTCGAGATGGAGAAATTTCTGGGGTGAAATGGGT
ATGACAGAAAAAAAGAAAGCGAAACGACGGACGCCTCCACGAAAAATTTA
TCTC
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protein sequence of rna8359

>rna8359-protein ID=rna8359-protein|Name=rna8359|organism=Nannochloropsis gaditana|type=polypeptide|length=572bp
MVSATLHVHIGQCGNQIGEQFWSLAADDFAAAADNGDASSFSPQYPHPLF
HEQDGRAAAVFVDSEAKVVDRLRKNSRLASVLRKEACITDSSGRANNWAM
GFTSSCKELAQSRGLFYSTVNVLRRELERIDSLQSLVIYHSLAGGTGSGV
GSALFQYLREACPSVNITTCSVGPFSTGDCATQWYNSTFTLNALSEHADT
VLYRDNDQLLGEYLRVAGAAEGTGRRGMSGGRGLALATSKASMGRLNESL
AADLACLLFPTVTSPSIPTCGGGGYRAWDALALQHDCTPFKYAKFVDNRS
SWSTSTATTLPTSSVSFKAAAGHGLHHLPDGRLGGAGGGQWADECVYLGK
DVIASFPTEDGRGKANVTLAAQMTVRGVDLPGTGPHVPGQEQVSLSEHPR
GKGGPQKSGQCRDSNRNHQKPQTSNPYLPPTPWHPGLTAFLHHDLPRALR
LPSWRQGSPIGTVFSSHSQPSILPCTSMPAARPFSSSSPGVAICANRTHM
SSTVEKVLGRAEEMAEHRAYLHWFHRHGIEDDDFTAAFEGLRRVKEEYDE
LGSGSDRALRDMSGRRRIRDYR
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mRNA from alignment at KK037248.1:471816..473826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8359 ID=rna8359|Name=rna8359|organism=Nannochloropsis gaditana|type=mRNA|length=2011bp|location=Sequence derived from alignment at KK037248.1:471816..473826- (Nannochloropsis gaditana)
CTCGTATTGTCCGCGGTTTGATCTCTCTTGTCCCCACAGACATAGCCATG
GTCTCAGCGACCTTGCACGTTCACATCGGTCAGTGCGGAAACCAGATAGG
AGAGCAGTTTTGGTCCCTGGCCGCAGACGATTTTGCCGCTGCCGCCGACA
ACGGCGATGCTTCTTCGTTTAGCCCCCAATACCCCCATCCATTGTTCCAT
GAGCAGGATGGTCGGGCTGCCGCAGTCTTCGTGGATAGCGAGGCTAAGGT
TGTTGATCGCCTTCGCAAGAATTCTCGATTGGCCAGCGTCCTCCGTAAGG
AAGCTTGCATTACGGACAGCTCCGGCCGTGCTAACAACTGGGCCATGGGG
TTTACTTCGTCTTGTAAAGAACTAGCTCAGAGCCGCGGGCTATTTTATTC
CACTGTAAACGTCCTTCGACGGGAATTAGAGCGGATAGACTCCCTTCAAA
GCCTAGTTATCTACCACAGCTTGGCGGGTGGGACGGGTTCAGGCGTCGGT
TCCGCGCTCTTCCAGTACCTGCGAGAGGCCTGCCCCTCCGTGAACATCAC
CACATGTTCGGTGGGACCGTTTTCAACGGGTGACTGCGCAACGCAGTGGT
ACAACTCAACGTTTACCTTGAACGCCCTCAGTGAGCATGCGGATACTGTC
CTATACCGAGATAATGATCAGTTGCTCGGAGAGTACCTGCGGGTGGCTGG
CGCGGCCGAAGGGACGGGCAGGAGGGGGATGTCCGGCGGACGAGGGCTTG
CACTTGCCACGTCAAAGGCGTCGATGGGGCGTTTGAACGAGAGTCTGGCC
GCTGACCTGGCCTGTCTCCTCTTCCCCACAGTGACCTCCCCCTCGATTCC
AACCTGTGGGGGGGGGGGGTACCGGGCCTGGGACGCACTGGCACTGCAGC
ACGACTGCACGCCCTTCAAGTACGCTAAATTCGTCGACAATCGCTCTTCC
TGGTCCACGTCCACTGCGACTACCCTTCCAACGTCCTCTGTCTCCTTCAA
AGCTGCTGCCGGGCACGGCCTTCACCACTTGCCAGATGGCAGGCTTGGGG
GAGCAGGCGGAGGCCAATGGGCCGATGAATGCGTCTACCTAGGCAAGGAT
GTGATCGCAAGCTTTCCAACGGAGGATGGGAGGGGGAAAGCCAACGTGAC
GCTGGCCGCTCAGATGACCGTGCGAGGGGTGGATCTGCCGGGCACGGGCC
CACACGTCCCAGGGCAGGAGCAGGTCTCCTTGTCCGAACACCCCCGAGGC
AAGGGGGGACCGCAAAAGAGCGGGCAATGTCGGGATTCCAACAGAAACCA
CCAGAAGCCCCAGACAAGCAACCCATATCTCCCCCCTACCCCTTGGCACC
CCGGCCTGACAGCCTTCCTCCACCACGACCTCCCGCGGGCTCTCCGTCTC
CCATCCTGGCGGCAGGGGTCGCCCATCGGAACCGTCTTCTCCTCCCACTC
CCAGCCCTCTATCCTTCCTTGCACGTCCATGCCTGCTGCCCGGCCTTTCT
CCTCCTCAAGTCCCGGTGTAGCAATCTGCGCCAACCGGACACACATGTCC
AGCACGGTCGAAAAAGTCCTAGGGCGAGCAGAGGAGATGGCTGAACACCG
GGCGTACTTGCATTGGTTCCATCGACACGGCATTGAGGACGACGATTTTA
CGGCAGCATTTGAAGGCCTGCGACGTGTCAAGGAGGAATATGATGAGTTG
GGGTCGGGGTCGGACAGGGCGCTTAGAGACATGTCGGGAAGAAGGCGAAT
TCGGGATTACAGATAGGTGTGATGATTGCGTCTTCCAGAGGCCTTTTTTG
AGACCCGCTCAAACAAAGTCATGGGATGTCAACAACGTTGTAAAGTCCTT
GGCGGGGTTGTCTGTAAAAAGTGGCAGGACGGAGTGGTCGGTCCCCGAGG
AGTATTTTCATCAGCTAGAACAGGGCAAGGAACTGGTATGGCTACGGACT
TCTACAATTTTCAAATGTGAGGCAACAAATTTTCCAGTGTGACTGAGATA
AATTTTTCGTG
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Coding sequence (CDS) from alignment at KK037248.1:471816..473826-

>rna8359 ID=rna8359|Name=rna8359|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at KK037248.1:471816..473826- (Nannochloropsis gaditana)
ATGGTCTCAGCGACCTTGCACGTTCACATCGGTCAGTGCGGAAACCAGAT
AGGAGAGCAGTTTTGGTCCCTGGCCGCAGACGATTTTGCCGCTGCCGCCG
ACAACGGCGATGCTTCTTCGTTTAGCCCCCAATACCCCCATCCATTGTTC
CATGAGCAGGATGGTCGGGCTGCCGCAGTCTTCGTGGATAGCGAGGCTAA
GGTTGTTGATCGCCTTCGCAAGAATTCTCGATTGGCCAGCGTCCTCCGTA
AGGAAGCTTGCATTACGGACAGCTCCGGCCGTGCTAACAACTGGGCCATG
GGGTTTACTTCGTCTTGTAAAGAACTAGCTCAGAGCCGCGGGCTATTTTA
TTCCACTGTAAACGTCCTTCGACGGGAATTAGAGCGGATAGACTCCCTTC
AAAGCCTAGTTATCTACCACAGCTTGGCGGGTGGGACGGGTTCAGGCGTC
GGTTCCGCGCTCTTCCAGTACCTGCGAGAGGCCTGCCCCTCCGTGAACAT
CACCACATGTTCGGTGGGACCGTTTTCAACGGGTGACTGCGCAACGCAGT
GGTACAACTCAACGTTTACCTTGAACGCCCTCAGTGAGCATGCGGATACT
GTCCTATACCGAGATAATGATCAGTTGCTCGGAGAGTACCTGCGGGTGGC
TGGCGCGGCCGAAGGGACGGGCAGGAGGGGGATGTCCGGCGGACGAGGGC
TTGCACTTGCCACGTCAAAGGCGTCGATGGGGCGTTTGAACGAGAGTCTG
GCCGCTGACCTGGCCTGTCTCCTCTTCCCCACAGTGACCTCCCCCTCGAT
TCCAACCTGTGGGGGGGGGGGGTACCGGGCCTGGGACGCACTGGCACTGC
AGCACGACTGCACGCCCTTCAAGTACGCTAAATTCGTCGACAATCGCTCT
TCCTGGTCCACGTCCACTGCGACTACCCTTCCAACGTCCTCTGTCTCCTT
CAAAGCTGCTGCCGGGCACGGCCTTCACCACTTGCCAGATGGCAGGCTTG
GGGGAGCAGGCGGAGGCCAATGGGCCGATGAATGCGTCTACCTAGGCAAG
GATGTGATCGCAAGCTTTCCAACGGAGGATGGGAGGGGGAAAGCCAACGT
GACGCTGGCCGCTCAGATGACCGTGCGAGGGGTGGATCTGCCGGGCACGG
GCCCACACGTCCCAGGGCAGGAGCAGGTCTCCTTGTCCGAACACCCCCGA
GGCAAGGGGGGACCGCAAAAGAGCGGGCAATGTCGGGATTCCAACAGAAA
CCACCAGAAGCCCCAGACAAGCAACCCATATCTCCCCCCTACCCCTTGGC
ACCCCGGCCTGACAGCCTTCCTCCACCACGACCTCCCGCGGGCTCTCCGT
CTCCCATCCTGGCGGCAGGGGTCGCCCATCGGAACCGTCTTCTCCTCCCA
CTCCCAGCCCTCTATCCTTCCTTGCACGTCCATGCCTGCTGCCCGGCCTT
TCTCCTCCTCAAGTCCCGGTGTAGCAATCTGCGCCAACCGGACACACATG
TCCAGCACGGTCGAAAAAGTCCTAGGGCGAGCAGAGGAGATGGCTGAACA
CCGGGCGTACTTGCATTGGTTCCATCGACACGGCATTGAGGACGACGATT
TTACGGCAGCATTTGAAGGCCTGCGACGTGTCAAGGAGGAATATGATGAG
TTGGGGTCGGGGTCGGACAGGGCGCTTAGAGACATGTCGGGAAGAAGGCG
AATTCGGGATTACAGATAG
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Synonyms
Publications