rna8358, rna8358 (mRNA) Nannochloropsis gaditana

Overview
Namerna8358
Unique Namerna8358
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2778
Alignment locationKK037248.1:471229..471832 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100230g4.2217.mrna
Orig protein idgnl|cribi|Naga_100230g4.2217
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:471229..471832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100230g4gene8097Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8358rna8358-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22346.1cds8331Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8358 ID=rna8358|Name=rna8358|organism=Nannochloropsis gaditana|type=mRNA|length=2778bp
GCCTTGCCTACGCCGACACTTATGTTCTTCTACCGACAGGCGAGCGCCCA
AACGCACCCTCATGGGCCTTCCTTTGTTTCTTCATTTCCTGACAGGGGAG
GCACGGTGGTAGCGGCATTGGAGTAGGCCACTAAATTCTTTAGTGTCGCG
GACCTGAAAATGAGCACCTTCCCAACGGCGTCCTCGCCCCCCCGTTCACC
GACACATGCAACCCCTCAACCCGCTTCCCCAACCCTCGTGGAGACCACGT
CGCCGCCATTACCACCGCTGTCGGCTGCGTCCACACGTACAGGTCCAGCG
TCGGCGGCGGGCGGAGTCTGGACGAAATCATCGTTTAGTCCGCACACACC
CGGTTTGTGCTCCAAGGACCTGAACGACTTTGACTTCGACGGCATCGATA
AAGATTTGGAACGCTTTCAACAAGACGAACTGGTCAAGCAAGCACTTTCG
AGAGGGGTGGAATTGAAGGGATACTCGGCGCAGATTGAGCAGGAATTGAA
AGAGGTGGAGATGGAGTCAGTGAAAGAGTACGTTCAACAATCCTCGAATG
TAGCGGCGCTCCATGGTCAGATCCAATCGTGCGATATGATCCTGGCACGC
ATGCAGGAGATGCTGCTGGGCTTTCAAGCAGATCTAGGTGGAATCAGCGA
TGAAATCCGACACTTGCAGGAAGAGTCACGCTCTATGAGTATCAAACTCC
AGAACCGGCGGGACGTGGAGGCCCAGCTCCAAAAGTTTCTGGACAAAATG
GTCTTGCCCCCCGACATGGTCTCCACGCTGACTGGGAAGGAAGTCAGCGA
TGCCTACATGGAATACATTGTCAATTTGAACAGCAAACTCGCCTACATAT
CTCAGACCCGGCCTGCGCCGGATGGGAGCAGTCTGGACATGGCACCGAAG
GAAACCGCAGCGGGGAAAGAAATGGCACCCAAGTTGGAGAAACTCCGACT
CAAAGCTGTGGCCAAGGGCCGCGATTACTTCTTGCAGCGCATCGCGGAGC
TACGGAATCCAAAGACCCACGTGCAGATGGTCCAGCAACATGGCTTGTTG
AAATACAAGCACCTGTACAAATTTCTGGTGAACGCGGCGCCGGAAGTCGC
GGAAGACGTGCGGACGACCTACGTGGAGACGATGGGCAAGACTGTCTTCA
GCCTTTTCCGAGCCTACCACGCCCAGCTCCAGAAGCTGGTGGTGGAGGTG
GCGAACAAGAACGACCTGATCGCGGTGGAGGAGTCGGCCGTGCGGGGCCT
GTTTTCGAGTCGGGTCGACTTGGGGAAGCGGGGGGATGCCTTCTCCTTGG
GCGGACGTGACCAGGTGTTGGGGACGGTGGAGGACGAGCCCATACTCGTG
CACATTGCGCAGGCGCAAAAGGCCCAGTACCCCTACGAGGTATGCCTCCG
CAGCGTCTTCAAACATTTGACGGAGGCGGTCACCTGTGAATTTTTGTTTT
GCCACGATTTCTTCGATGCACATGCTCCCGAACCGGCAGGACAGAACGAT
TCTGGCCACCGGGGGACCGAGACGTTTAACGCCGTTTTTGCACGGACGCT
GAGCTTGTGTCTAGAAAACTTGGAGAACTATTTGTTCAATTGCTACGATG
CCATTTCGCTTCTCTTGATGATCCGACTCACCATTTTTTTCCGGAGAATC
ATGCAGCGGCGGCGGATACCCGTGCTGGACGCATTCTACGACCGGGTTAC
CATGTTGTTATGGCCCCGTTTCAAGGCGATATTCGACGCCAACCTAAAGA
GCGTTCGGACGGCCAATGCGAAGAAGTTGGGGGGGGTGGATTTGCACCCG
CATTACGTGTCGAGGCGATACGCCGAGTTCACAGCCACGTGTCTAGCTCT
GCACGCGGCGGCATACCCCAGTGGTGGCTACAGGGGGGCACCCGCGGCGG
TCTTGCCTCCCGTAATGCAGACGGGCGGGGAGGACATGCTCCTCCACGAC
GTGTCGACGCTGACACGAGAGATCTTGACTTTGCTGCAGCGGCTGGCCGA
ACGCCAACGGGGAATCAAGGAACGCTATGTCTTTCTGATCAACAATTACG
ACCAGATCTTGAACGTCTTCCACGAACGGAGGGTGGAGGGGGAAGAGCGG
CGTCGCTTTGAAGAGGCTCTGGCGCACCAGCGGGAGCTTTTTGTCGAGGA
GGAATTGAAAACCGCATCCTTTGGCCGATTGATTGCCTTTGTCAAGGACT
CAGAGGCGACTGCCGCCAGCGCCCTTAGTGAGGGCCGAGAAGGGCCTCTG
GAGGTGGATGCGGGAAAAGCCGAGCAGCTGGTGCGGGAATTTGCGGCGTC
CTGGAAAGCGGGCATAGAAGGGATCTACAGAGACGTGATGGCATACTTTG
CGAATTTCAAAAACGGAATGGAGATTTTGAAGCAGGTGTTGACGCAACTG
CTCTTGTACTATACGCGCTTTCAAGAAATCTTGAAGAAAGCTTGGCCCCG
GAATCCGCCCGCCTTCGCCCAAGACGTCGTTCAAACCAGTCAGATCCTTT
CGGAGATTCGGAAGTACAACCGGACATTTTAAAAGGGCGGGAGAGCCGGC
CAGGATGGAGGCCTCATGTTCACATGCATGCATATGTCAAAAGGGGCAGA
CTGTGCGTCGCAACACGACAGAGTACGATAAAACTCGGAGGAAGAGCGCA
CAAAATGCTACGAAATCAAAACCTCTACTATGTGAACGATGGCCATCGCT
CCAATCTTCTGAATCTGTGCGTCTCACGCTCCTGCGTTTTGTTCATTCTT
GTAGAGTTCTACCTGTACACTTGATACG
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protein sequence of rna8358

>rna8358-protein ID=rna8358-protein|Name=rna8358|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MYILKHKMAGSGIKCMAQMCDTSTLALRLGWKNRNIRAGKYLIVFGQCVF
SSSSYQLEDHNMIEGRAYAYSCVHQSSCALGLKGTL
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mRNA from alignment at KK037248.1:471229..471832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8358 ID=rna8358|Name=rna8358|organism=Nannochloropsis gaditana|type=mRNA|length=604bp|location=Sequence derived from alignment at KK037248.1:471229..471832+ (Nannochloropsis gaditana)
cagcgaggggaCACGGGAAGCATCGCTTTCCAGTGCGTCTATGACCTTTC
CGTGATTTTTATTTTTGACCCGTGCTAAGGCAGTGCAGTAGCATTTGAAT
CATTTTTGTGATTCATTTTGGAAAAAAGATCGATGGATGGATTCGTGCAA
TGTACATTTTGAAACACAAGATGGCAGGCAGCGGCATCAAGTGCATGGCA
CAGATGTGCGACACGTCAACCCTCGCACTGCGTTTGGGATGGAAAAATAG
GAATATACGTGCAGGAAAATACTTGATAGTTTTTGGACAATGTGTTTTTT
CATCTTCGTCGTACCAGCTTGAAGACCATAACATGATAGAGGGCAGGGCA
TACGCGTATAGTTGTGTCCACCAAAGCTCCTGTGCCTTGGGGCTGAAGGG
AACTTTGTAAGAGCATTCTTGTGTTGACAATAAGATAATCCAGGTAAGCa
taatgaggagggaaacccTTATGGTGTGGTAATGGAAGTCCATGAATGAA
ATTGGAGAATAGAGGTCTCGAGATGGAGAAATTTCTGGGGTGAAATGGGT
ATGacagaaaaaaagaaagcgaaACGACGGACGCCTCCACGAAAAATTTA
TCTC
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Coding sequence (CDS) from alignment at KK037248.1:471229..471832+

>rna8358 ID=rna8358|Name=rna8358|organism=Nannochloropsis gaditana|type=CDS|length=261bp|location=Sequence derived from alignment at KK037248.1:471229..471832+ (Nannochloropsis gaditana)
ATGTACATTTTGAAACACAAGATGGCAGGCAGCGGCATCAAGTGCATGGC
ACAGATGTGCGACACGTCAACCCTCGCACTGCGTTTGGGATGGAAAAATA
GGAATATACGTGCAGGAAAATACTTGATAGTTTTTGGACAATGTGTTTTT
TCATCTTCGTCGTACCAGCTTGAAGACCATAACATGATAGAGGGCAGGGC
ATACGCGTATAGTTGTGTCCACCAAAGCTCCTGTGCCTTGGGGCTGAAGG
GAACTTTGTAA
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Synonyms
Publications