rna8357, rna8357 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8357
Unique Name	rna8357
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1463
Alignment location	KK037248.1:468425..471202 -

Link to JBrowse

Properties


Property Name	Value
Product	vacuolar protein sorting-associated protein 52
Orig transcript id	gnl\|cribi\|Naga_100230g5.2212.mrna
Orig protein id	gnl\|cribi\|Naga_100230g5.2212
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:468425..471202 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100230g5	gene8096	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22341.1	cds8330	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8357	rna8357-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:468425..471202-
coding sequence from alignment at KK037248.1:468425..471202-

mRNA sequence

>rna8357 ID=rna8357|Name=rna8357|organism=Nannochloropsis gaditana|type=mRNA|length=1463bp
ATGACAGGCGACAACATAATCGATCTTGGCAGCCGGCCCGAAGCACTACG
CGACGTCTTGCTAGACCGTCTGTTGTGTCCACTGCTTTCTCGCGTCATTT
ATCTGGCTCACACGCTCACGCCTTCACAAGGTCTCTCACCCCAAGCACCG
GGGCACCGGAAGAGCGGAGCCCCTCCTTCGGGTATGTTCAGCATGCTGGA
TTTCAATAGTTTGCGGACGGCCTTGGAGGTGTTGGTGCTCTGGGGCATCT
ACCCCTGTCTGGACGACGGAGTGGCCTCCCGGCGGAGGGGCCGGGACCGG
GGGTGCTGCAGATACTCCTGTGGTACGATCTTCACGGATCGGACGCTGCT
GAGTACTTATATCCTCTGAATCCTGCCTCGTTGCACTTTCCTTCACGGCC
CGTTACCGCCATGGCACAGCTTGTCGTTCAGGGCTGTGGCTTGTTCTCTA
TTACCCTTTCCCTCGCTTTTGTTCGGCTCTTAAGCATCGGGAATGTTCGC
TTACTCTTCTTCCCTCCCTCCCTCCCACAATACCCTCCCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCGCCCCAGACCTATCCGCCTGCTCC
GCCTCGCCCACTCCCTCCGGTTCGCCGACATTCTAGAAGCTTCCATGGAA
CTCGAGCAGTTCGGCTCTGTTTTCCAAGCCCGGCACATCGCCGACCTCTT
TGCCCTTTACTTCTCCCTCCAGCACCATTCACGCTCCCTTCCTCCCTCGC
CCTCCACCCCGACCGTCTCCCAGCGCCTGCAGGTTCTGTCCACTCGCTTC
GGTCCCCGCCTGGTCGTCAACGGCCTCCGCTCCCTCCTTGCCTCCCATCC
GTCCTCCCTCCCCCCGTGGCTCCGTCGCGCCTGCGCCCATCGCCTCTCCC
TCCTCCTCCTCCAGCCGGGAGGGCTCCGGGCCGTCCTGGAATCCTTCTTG
GGGGGCTTGCCCGACACCCTCGAGGCTTTCCCCGCCCATGAGCAAGTCCT
CCGCCTCCTCACCTCCCTCCCCTCCCACCTCTCCCCCTCCGAATACATCG
CCGGCCTCGCCCCTCAGCTGCCCCCCCTCCTCCACACTCCCGCCCGGGAC
CACGGCCGCGTGCAGTCCTTCCTCGCTTCCCTCATCCACCGCCTCACCCA
GCGCTTTCCCTTCGTCACCCGCGACGTCTTCCTCTTCCCATGCCTATTTC
AGCCCCTTCTGGTGGAGGAAACCGATGCGGAGGAGGCGGACGAGGCGACC
GTTGAACGAGCCGTTGAGGATTTGCAGGTCCTGTTAACGGTCACACCGCC
GTTACCCGCCTTTGTCGAGACGTTGGCAGTCCCCTCCTTGATCTTCCCCT
TGATGGATCTGTACGGCTTCGTCCGGTCGACGCGGGCCCGGGGCAAAGCG
GAGGTGGAGGCCTGCCTTTTGGTGCTTTTGCAAGGGGCGGGCATGGAGAA
GGACGGAGCGGGA

protein sequence of rna8357

>rna8357-protein ID=rna8357-protein|Name=rna8357|organism=Nannochloropsis gaditana|type=polypeptide|length=790bp
MSTFPTASSPPRSPTHATPQPASPTLVETTSPPLPPLSAASTRTGPASAA
GGVWTKSSFSPHTPGLCSKDLNDFDFDGIDKDLERFQQDELVKQALSRGV
ELKGYSAQIEQELKEVEMESVKEYVQQSSNVAALHGQIQSCDMILARMQE
MLLGFQADLGGISDEIRHLQEESRSMSIKLQNRRDVEAQLQKFLDKMVLP
PDMVSTLTGKEVSDAYMEYIVNLNSKLAYISQTRPAPDGSSLDMAPKETA
AGKEMAPKLEKLRLKAVAKGRDYFLQRIAELRNPKTHVQMVQQHGLLKYK
HLYKFLVNAAPEVAEDVRTTYVETMGKTVFSLFRAYHAQLQKLVVEVANK
NDLIAVEESAVRGLFSSRVDLGKRGDAFSLGGRDQVLGTVEDEPILVHIA
QAQKAQYPYEVCLRSVFKHLTEAVTCEFLFCHDFFDAHAPEPAGQNDSGH
RGTETFNAVFARTLSLCLENLENYLFNCYDAISLLLMIRLTIFFRRIMQR
RRIPVLDAFYDRVTMLLWPRFKAIFDANLKSVRTANAKKLGGVDLHPHYV
SRRYAEFTATCLALHAAAYPSGGYRGAPAAVLPPVMQTGGEDMLLHDVST
LTREILTLLQRLAERQRGIKERYVFLINNYDQILNVFHERRVEGEERRRF
EEALAHQRELFVEEELKTASFGRLIAFVKDSEATAASALSEGREGPLEVD
AGKAEQLVREFAASWKAGIEGIYRDVMAYFANFKNGMEILKQVLTQLLLY
YTRFQEILKKAWPRNPPAFAQDVVQTSQILSEIRKYNRTF

mRNA from alignment at KK037248.1:468425..471202-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8357 ID=rna8357|Name=rna8357|organism=Nannochloropsis gaditana|type=mRNA|length=2778bp|location=Sequence derived from alignment at KK037248.1:468425..471202- (Nannochloropsis gaditana)
GCCTTGCCTACGCCGACACTTATGTTCTTCTACCGACAGGCGAGCGCCCA
AACGCACCCTCATGGGCCTTCCTTTGTTTCTTCATTTCCTGACAGGGGAG
GCACGGTGGTAGCGGCATTGGAGTAGGCCACTAAATTCTTTAGTGTCGCG
GACCTGAAAATGAGCACCTTCCCAACGGCGTCCTCGCCCCCCCGTTCACC
GACACATGCAACCCCTCAACCCGCTTCCCCAACCCTCGTGGAGACCACGT
CGCCGCCATTACCACCGCTGTCGGCTGCGTCCACACGTACAGGTCCAGCG
TCGGCGGCGGGCGGAGTCTGGACGAAATCATCGTTTAGTCCGCACACACC
CGGTTTGTGCTCCAAGGACCTGAACGACTTTGACTTCGACGGCATCGATA
AAGATTTGGAACGCTTTCAACAAGACGAACTGGTCAAGCAAGCACTTTCG
AGAGGGGTGGAATTGAAGGGATACTCGGCGCAGATTGAGCAGGAATTGAA
AGAGGTGGAGATGGAGTCAGTGAAAGAGTACGTTCAACAATCCTCGAATG
TAGCGGCGCTCCATGGTCAGATCCAATCGTGCGATATGATCCTGGCACGC
ATGCAGGAGATGCTGCTGGGCTTTCAAGCAGATCTAGGTGGAATCAGCGA
TGAAATCCGACACTTGCAGGAAGAGTCACGCTCTATGAGTATCAAACTCC
AGAACCGGCGGGACGTGGAGGCCCAGCTCCAAAAGTTTCTGGACAAAATG
GTCTTGCCCCCCGACATGGTCTCCACGCTGACTGGGAAGGAAGTCAGCGA
TGCCTACATGGAATACATTGTCAATTTGAACAGCAAACTCGCCTACATAT
CTCAGACCCGGCCTGCGCCGGATGGGAGCAGTCTGGACATGGCACCGAAG
GAAACCGCAGCGGGGAAAGAAATGGCACCCAAGTTGGAGAAACTCCGACT
CAAAGCTGTGGCCAAGGGCCGCGATTACTTCTTGCAGCGCATCGCGGAGC
TACGGAATCCAAAGACCCACGTGCAGATGGTCCAGCAACATGGCTTGTTG
AAATACAAGCACCTGTACAAATTTCTGGTGAACGCGGCGCCGGAAGTCGC
GGAAGACGTGCGGACGACCTACGTGGAGACGATGGGCAAGACTGTCTTCA
GCCTTTTCCGAGCCTACCACGCCCAGCTCCAGAAGCTGGTGGTGGAGGTG
GCGAACAAGAACGACCTGATCGCGGTGGAGGAGTCGGCCGTGCGGGGCCT
GTTTTCGAGTCGGGTCGACTTGGGGAAGCGGGGGGATGCCTTCTCCTTGG
GCGGACGTGACCAGGTGTTGGGGACGGTGGAGGACGAGCCCATACTCGTG
CACATTGCGCAGGCGCAAAAGGCCCAGTACCCCTACGAGGTATGCCTCCG
CAGCGTCTTCAAACATTTGACGGAGGCGGTCACCTGTGAATTTTTGTTTT
GCCACGATTTCTTCGATGCACATGCTCCCGAACCGGCAGGACAGAACGAT
TCTGGCCACCGGGGGACCGAGACGTTTAACGCCGTTTTTGCACGGACGCT
GAGCTTGTGTCTAGAAAACTTGGAGAACTATTTGTTCAATTGCTACGATG
CCATTTCGCTTCTCTTGATGATCCGACTCACCATTTTTTTCCGGAGAATC
ATGCAGCGGCGGCGGATACCCGTGCTGGACGCATTCTACGACCGGGTTAC
CATGTTGTTATGGCCCCGTTTCAAGGCGATATTCGACGCCAACCTAAAGA
GCGTTCGGACGGCCAATGCGAAGAAGTTGGGGGGGGTGGATTTGCACCCG
CATTACGTGTCGAGGCGATACGCCGAGTTCACAGCCACGTGTCTAGCTCT
GCACGCGGCGGCATACCCCAGTGGTGGCTACAGGGGGGCACCCGCGGCGG
TCTTGCCTCCCGTAATGCAGACGGGCGGGGAGGACATGCTCCTCCACGAC
GTGTCGACGCTGACACGAGAGATCTTGACTTTGCTGCAGCGGCTGGCCGA
ACGCCAACGGGGAATCAAGGAACGCTATGTCTTTCTGATCAACAATTACG
ACCAGATCTTGAACGTCTTCCACGAACGGAGGGTGGAGGGGGAAGAGCGG
CGTCGCTTTGAAGAGGCTCTGGCGCACCAGCGGGAGCTTTTTGTCGAGGA
GGAATTGAAAACCGCATCCTTTGGCCGATTGATTGCCTTTGTCAAGGACT
CAGAGGCGACTGCCGCCAGCGCCCTTAGTGAGGGCCGAGAAGGGCCTCTG
GAGGTGGATGCGGGAAAAGCCGAGCAGCTGGTGCGGGAATTTGCGGCGTC
CTGGAAAGCGGGCATAGAAGGGATCTACAGAGACGTGATGGCATACTTTG
CGAATTTCAAAAACGGAATGGAGATTTTGAAGCAGGTGTTGACGCAACTG
CTCTTGTACTATACGCGCTTTCAAGAAATCTTGAAGAAAGCTTGGCCCCG
GAATCCGCCCGCCTTCGCCCAAGACGTCGTTCAAACCAGTCAGATCCTTT
CGGAGATTCGGAAGTACAACCGGACATTTTAAAAGGGCGGGAGAGCCGGC
CAGGATGGAGGCCTCATGTTCACATGCATGCATATGTCAAAAGGGGCAGA
CTGTGCGTCGCAACACGACAGAGTACGATAAAACTCGGAGGAAGAGCGCA
CAAAATGCTACGAAATCAAAACCTCTACTATGTGAACGATGGCCATCGCT
CCAATCTTCTGAATCTGTGCGTCTCACGCTCCTGCGTTTTGTTCATTCTT
GTAGAGTTCTACCTGTACACTTGATACG

Coding sequence (CDS) from alignment at KK037248.1:468425..471202-

>rna8357 ID=rna8357|Name=rna8357|organism=Nannochloropsis gaditana|type=CDS|length=2373bp|location=Sequence derived from alignment at KK037248.1:468425..471202- (Nannochloropsis gaditana)
ATGAGCACCTTCCCAACGGCGTCCTCGCCCCCCCGTTCACCGACACATGC
AACCCCTCAACCCGCTTCCCCAACCCTCGTGGAGACCACGTCGCCGCCAT
TACCACCGCTGTCGGCTGCGTCCACACGTACAGGTCCAGCGTCGGCGGCG
GGCGGAGTCTGGACGAAATCATCGTTTAGTCCGCACACACCCGGTTTGTG
CTCCAAGGACCTGAACGACTTTGACTTCGACGGCATCGATAAAGATTTGG
AACGCTTTCAACAAGACGAACTGGTCAAGCAAGCACTTTCGAGAGGGGTG
GAATTGAAGGGATACTCGGCGCAGATTGAGCAGGAATTGAAAGAGGTGGA
GATGGAGTCAGTGAAAGAGTACGTTCAACAATCCTCGAATGTAGCGGCGC
TCCATGGTCAGATCCAATCGTGCGATATGATCCTGGCACGCATGCAGGAG
ATGCTGCTGGGCTTTCAAGCAGATCTAGGTGGAATCAGCGATGAAATCCG
ACACTTGCAGGAAGAGTCACGCTCTATGAGTATCAAACTCCAGAACCGGC
GGGACGTGGAGGCCCAGCTCCAAAAGTTTCTGGACAAAATGGTCTTGCCC
CCCGACATGGTCTCCACGCTGACTGGGAAGGAAGTCAGCGATGCCTACAT
GGAATACATTGTCAATTTGAACAGCAAACTCGCCTACATATCTCAGACCC
GGCCTGCGCCGGATGGGAGCAGTCTGGACATGGCACCGAAGGAAACCGCA
GCGGGGAAAGAAATGGCACCCAAGTTGGAGAAACTCCGACTCAAAGCTGT
GGCCAAGGGCCGCGATTACTTCTTGCAGCGCATCGCGGAGCTACGGAATC
CAAAGACCCACGTGCAGATGGTCCAGCAACATGGCTTGTTGAAATACAAG
CACCTGTACAAATTTCTGGTGAACGCGGCGCCGGAAGTCGCGGAAGACGT
GCGGACGACCTACGTGGAGACGATGGGCAAGACTGTCTTCAGCCTTTTCC
GAGCCTACCACGCCCAGCTCCAGAAGCTGGTGGTGGAGGTGGCGAACAAG
AACGACCTGATCGCGGTGGAGGAGTCGGCCGTGCGGGGCCTGTTTTCGAG
TCGGGTCGACTTGGGGAAGCGGGGGGATGCCTTCTCCTTGGGCGGACGTG
ACCAGGTGTTGGGGACGGTGGAGGACGAGCCCATACTCGTGCACATTGCG
CAGGCGCAAAAGGCCCAGTACCCCTACGAGGTATGCCTCCGCAGCGTCTT
CAAACATTTGACGGAGGCGGTCACCTGTGAATTTTTGTTTTGCCACGATT
TCTTCGATGCACATGCTCCCGAACCGGCAGGACAGAACGATTCTGGCCAC
CGGGGGACCGAGACGTTTAACGCCGTTTTTGCACGGACGCTGAGCTTGTG
TCTAGAAAACTTGGAGAACTATTTGTTCAATTGCTACGATGCCATTTCGC
TTCTCTTGATGATCCGACTCACCATTTTTTTCCGGAGAATCATGCAGCGG
CGGCGGATACCCGTGCTGGACGCATTCTACGACCGGGTTACCATGTTGTT
ATGGCCCCGTTTCAAGGCGATATTCGACGCCAACCTAAAGAGCGTTCGGA
CGGCCAATGCGAAGAAGTTGGGGGGGGTGGATTTGCACCCGCATTACGTG
TCGAGGCGATACGCCGAGTTCACAGCCACGTGTCTAGCTCTGCACGCGGC
GGCATACCCCAGTGGTGGCTACAGGGGGGCACCCGCGGCGGTCTTGCCTC
CCGTAATGCAGACGGGCGGGGAGGACATGCTCCTCCACGACGTGTCGACG
CTGACACGAGAGATCTTGACTTTGCTGCAGCGGCTGGCCGAACGCCAACG
GGGAATCAAGGAACGCTATGTCTTTCTGATCAACAATTACGACCAGATCT
TGAACGTCTTCCACGAACGGAGGGTGGAGGGGGAAGAGCGGCGTCGCTTT
GAAGAGGCTCTGGCGCACCAGCGGGAGCTTTTTGTCGAGGAGGAATTGAA
AACCGCATCCTTTGGCCGATTGATTGCCTTTGTCAAGGACTCAGAGGCGA
CTGCCGCCAGCGCCCTTAGTGAGGGCCGAGAAGGGCCTCTGGAGGTGGAT
GCGGGAAAAGCCGAGCAGCTGGTGCGGGAATTTGCGGCGTCCTGGAAAGC
GGGCATAGAAGGGATCTACAGAGACGTGATGGCATACTTTGCGAATTTCA
AAAACGGAATGGAGATTTTGAAGCAGGTGTTGACGCAACTGCTCTTGTAC
TATACGCGCTTTCAAGAAATCTTGAAGAAAGCTTGGCCCCGGAATCCGCC
CGCCTTCGCCCAAGACGTCGTTCAAACCAGTCAGATCCTTTCGGAGATTC
GGAAGTACAACCGGACATTTTAA

Synonyms

Publications