rna8353, rna8353 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8353
Unique Name	rna8353
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2241
Alignment location	KK037248.1:454440..455768 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100208g1.7574.mrna
Orig protein id	gnl\|cribi\|Naga_100208g1.7574
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:454440..455768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100208g1	gene8092	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22356.1	cds8326	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8353	rna8353-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:454440..455768-
coding sequence from alignment at KK037248.1:454440..455768-

mRNA sequence

>rna8353 ID=rna8353|Name=rna8353|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp
TATCGAGTCGCAGCAAACTTCAAGTCGCTCCGACGATGGTACTCGTTGCC
TATGTCATGTCCCCTGTCTCCGGCAACACTTTTCGAACGTGTCATTTGTC
TAGGTGTACGGTAATATAACGGTCCGATCTCATCTCTGGGAGCGCAGGCA
TGCTCGTGCTTACCTTTTTATTCGCCATATTCAAACCCCGGATGCGATAT
GAGAATTCAAAGCAAGCCAGTCACACTCACCATACCAGGCATTATTTATC
TACCTGCGCCAGGATGCCATGCAGCGGGGAACTCTTGCGCCCTCAAGATA
CGCGTGCTAGGAGGAAAAGAAGGGCTTTATGCTTTCTACCAGGTGTTCTG
GCGTCCATCTTACTTGTCTTCAGCGTGACAACTACTCCCGCTGCCGGACT
TATCCTCCCCCCCATCGACGCAGCAACAGGGCCTGAGGTTGCCCTAGTCC
TCCTTCACGGGGCTAACGTCTCTCCCGAGGCATATCTGCCTTTATGTCGC
ACGCTCCAAACAGTAATTCAGACTGACGTACGTCTGTGGATAGGTTTGCC
GGATGTTAATCTGAATGTTCCTATCTATCTTGACGGCGCTATGAATGATC
TCAAATCTAATTTTACGGCTCGCGGGCTACCGGTCGATGCCCCACGCTTC
CTTGCCGGACACTCGCTCGGTGGTGTCCGTGCGCAATCTTACGCTCAAGA
GCATGCAGAAGATTGGGTGGGAGGGATCTTGATGGCTTCTGTGCTCCTGC
GCGAGTACGACAACATGACTTACCCCGTCCCAACCCTGACCGTGGGGGGA
GAAAAAGACGGGAACATGCGTGTGTCCCGCGTCGCTCAAGCCTCGCATGT
CTACCGCATGCAGGCGGAGAAGACGGAGGATTTCCCCGTGGTCGTGGTCC
CGGGGGCGAATCACATGAGTTTCGCGTCAGGCCAACCGCCTCTTCCTGTG
GCTTTGGCGGATCTGACCGCCGAAATTTCCGAGGATGACGGCCACGAAAG
CATTGCCCAGGTGATGGCGGCTTTCATGCGCGCGCGTCTGCGCCAGGAGC
TGCGGAGAGCAGGAGATCGTGAGGATCGTGGAAGCAGCGGAGACGTTCGA
TTTCAGGAGGACAGTGTGATGACCGCGGCACTGGAGACAACGGCGCAGCT
GGTCGACCCCTTGATCAAAGCCATGCTCTTGGAAGGCTCCTGGCACTTTC
AGCCGCCCTGCAATTCCGACAGGCCCAGCCCGCACTGCCCCTTCTACCCG
GCCTGGCCCCCACAGCCTGAGGACCGGGAACCGAGCACGGAGACGAACTG
CGTGTGTGGATGCTTGTGGGTCATGGACGTGGCTCAGGCGCACGTCGGAG
ATTTGGAGGGGTACGCCACTTACGTGGTCCGGGACGCTTTCCACGACGTG
CGAGACACAGAGCCCTACCATCATGCCCACCTGTGGAACGGCTGCACAAC
GGGGGCCCTCCTGGACGGGAGCTGCGTGCTCAACATCACCACTGTGAGTG
AGCTGATCTTTGACCCACTCGACGCCCTGGATGCTGGCTTTGCCCCCGTC
ACCGCTGCGGAAATTCGGGCCAAGATGAAAAGCCGGCAGTCCATCTACCA
GGAGACGGTGGATCCGGAAGCAGCCTTGGCGGACACGGATAAATTCGATT
TCTGCGCGGAAATAAATGCCAAAGCATTCGCCTGGGCCCACGCCCAGGCT
CCGCCCCGAACGAAAGAGAGGTTTGATAGACTGGGAGTACAGCCCGTGTT
CGACCCCGACATTCGACGCCGCGTGCAGATCGGTCCCATCTGGATCAACA
GCCCCCTGCGCTTGCACGAGCAGTACGATCGGCTCAAGGAGCAGTACTTC
TGGCATATACAGAGCCCTACGCTCGTGACGGACGTCACCGCAAACATTTA
TCCCGACAGTGCTGGCTATCACTACTGCAAACTGCTCTCCCCCGCGCGGG
CACTGGAATGGATCTACGTGGACGGTTTGCGCAGGTACGACAGGGCAAGC
GGAGTAGTGGGAAGGGGGGAAGAAGGGACGGGAGGGATGACGGCGGAAGA
AGAGACAGGGGATCAATTGGCTAGAGGAAAGCCTGTTAACAGCGAGCGTG
CAGGAAAAGGGGGGCGCGGATGGGACCAGAACAACCAAGAGGGACCGTAT
CAAACCGCCTCCCTCCGTGAGAGGCTGTAAAGTGCAGTGTATGATTCATG
TGTGCGTTTTCATGAAAAAAAGAATTATCGAGCGCGACAAA

protein sequence of rna8353

>rna8353-protein ID=rna8353-protein|Name=rna8353|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
GVWRESLKPGTGSTCCSLPISRRRWSRRRSCKREEATYQAWRTRLLEEHG
TLWVMGERNGAVGLTHASGRSRRRSTTRRGGEKRSAPPLPLTLNLNPLGG
ILRALSPRDKSLRSRGPFPLRARPCRRTRNSTTRKTPGFLWMGFTCRGRS
DLPVERERCARRVSGSWRTSGIMKDCQGATWCTRLPPRSQSLGVPEGLWP
ALHAGVSLWCCGGRKFALRIYCTKSKSTAKRRVEEFQKPVGYGLWQTMRD
TT

mRNA from alignment at KK037248.1:454440..455768-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8353 ID=rna8353|Name=rna8353|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp|location=Sequence derived from alignment at KK037248.1:454440..455768- (Nannochloropsis gaditana)
GGTGTGTGGCGCGAAAGTCTGAAACCTGGAACTGGCAGCACATGCTGCAG
TTTACCCATTTCCCGGAGGAGATGGAGCAGGAGACGATCGTGCAAGAGGG
AGGAAGCAACGTATCAAGCTTGGCGAACCAGGCTCTTGGAAGAACATGGG
ACCCTCTGGGTCATGGGGGAACGCAATGGAGCCGTGGGACTCACACATGC
GTCAGGGAGGTCCCGTCGACGTTCTACAACCCGCCGAGGGGGGGAAAAGC
GGTCGGCGCCTCCCTTGCCCCTCACCTTGAATCTCAACCCCTTGGGAGGA
ATCCTTCGTGCCCTCTCCCCGAGAGACAAGAGCTTGAGGTCAAGAGGACC
TTTTCCTCTCCGTGCACGTCCATGTCGTCGTACTCGGAATTCGACGACCA
GGAAGACGCCGGGGTTTCTTTGGATGGGATTCACCTGCAGGGGGAGGAGC
GACTTACCCGTGGAGCGGGAGCGATGCGCCCGGCGGGTGTCTGGATCATG
GAGGACGTCAGGGATCATGAAGGACTGCCAAGGAGCAACCTGGTGCACGC
GCCTCCCCCCCCGATCCCAATCACTTGGAGTACCTGAAGGTCTCTGGCCC
GCGCTCCACGCTGGCGTGAGTCTCTGGTGTTGTGGAGGAAGGAAATTTGC
TCTTCGTATTTATTGCACAAAATCAAAGTCCACTGCCAAGCGCCGGGTGG
AGGAGTTTCAAAAACCGGTTGGATATGGATTGTGGCAAACTATGCGTGAT
ACGACGTGACCGCCAGGCCAGAAAAATGCGTGCCGTGCGCCTCACATTTA
GAATGATGCATCTTCAGATATATAAAATGCAACTACGAATGAATTACCGA
ATTTCTTCAAATAATTATGATAGCTTGAATAAGCTGACGATAAGAGGAAC
TCAGCATCTAGACCCTGAAATTGGAATGAGAAACTATAGAATCGGCCGCG
ATACTACTAGAGTAGTCGAAGCCGTACATCAGTATCAAACCACTTCTGAG
TGAGGCGCCATGATGCGATAAGTTGTGAAACTACAACCACATACAAGGTT
AGCTTAGTGATTTTAAATACCAAGAAATTAGCGAAGACATTGAATTAAGC
TACGTCATAGCGATCAATAGAAATAAGACAGAACATAAAATAGAATTTTG
TCAAATGCAAAAAAGAGAAGGGAAGAAAAAAACCCGTCGCCGGAATGAAG
ATGACAAATAAATACACGGAGAGGTAAGCAGGCCTGGGGCATCGTCCATG
AATAGTTTCTGTCCCGTCCTCCAACCTCCCCCCACAAAAGATCATCAAGA
CATAGAGAATGAAGACTACTGCTGATGCC

Coding sequence (CDS) from alignment at KK037248.1:454440..455768-

>rna8353 ID=rna8353|Name=rna8353|organism=Nannochloropsis gaditana|type=CDS|length=759bp|location=Sequence derived from alignment at KK037248.1:454440..455768- (Nannochloropsis gaditana)
GGTGTGTGGCGCGAAAGTCTGAAACCTGGAACTGGCAGCACATGCTGCAG
TTTACCCATTTCCCGGAGGAGATGGAGCAGGAGACGATCGTGCAAGAGGG
AGGAAGCAACGTATCAAGCTTGGCGAACCAGGCTCTTGGAAGAACATGGG
ACCCTCTGGGTCATGGGGGAACGCAATGGAGCCGTGGGACTCACACATGC
GTCAGGGAGGTCCCGTCGACGTTCTACAACCCGCCGAGGGGGGGAAAAGC
GGTCGGCGCCTCCCTTGCCCCTCACCTTGAATCTCAACCCCTTGGGAGGA
ATCCTTCGTGCCCTCTCCCCGAGAGACAAGAGCTTGAGGTCAAGAGGACC
TTTTCCTCTCCGTGCACGTCCATGTCGTCGTACTCGGAATTCGACGACCA
GGAAGACGCCGGGGTTTCTTTGGATGGGATTCACCTGCAGGGGGAGGAGC
GACTTACCCGTGGAGCGGGAGCGATGCGCCCGGCGGGTGTCTGGATCATG
GAGGACGTCAGGGATCATGAAGGACTGCCAAGGAGCAACCTGGTGCACGC
GCCTCCCCCCCCGATCCCAATCACTTGGAGTACCTGAAGGTCTCTGGCCC
GCGCTCCACGCTGGCGTGAGTCTCTGGTGTTGTGGAGGAAGGAAATTTGC
TCTTCGTATTTATTGCACAAAATCAAAGTCCACTGCCAAGCGCCGGGTGG
AGGAGTTTCAAAAACCGGTTGGATATGGATTGTGGCAAACTATGCGTGAT
ACGACGTGA

Synonyms

Publications