rna8348, rna8348 (mRNA) Nannochloropsis gaditana

Overview
Namerna8348
Unique Namerna8348
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1302
Alignment locationKK037248.1:439742..441330 +

Link to JBrowse

Properties
Property NameValue
Productcarbonyl reductase
Orig transcript idgnl|cribi|Naga_100208g6.7573.mrna
Orig protein idgnl|cribi|Naga_100208g6.7573
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:439742..441330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100208g6gene8087Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8348rna8348-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22355.1cds8321Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8348 ID=rna8348|Name=rna8348|organism=Nannochloropsis gaditana|type=mRNA|length=1302bp
AGGGGAGGTTTTTGACGGCCTCGTCCACACCTAGACCGGCCACATGGTTG
TCTGATCTTCGTCTTGACACTATTTCAATCTCTGGGCACAGACATCATGT
ACGGACAGCAGTCAGGACCCAAAAAGTATGGTCTTGTGGTCCCTCAGAAA
AAGGCTGTGCCCGGCATGCGGGGCCGGCCCCGTCCTGCATCGGCAGCACC
TCGACGGCCTGCTGGAAGCGCTTTCTCACTGGACGACGATGATTCCGACG
ACAACGGACAGGAGGAAGACGGGTTGGCTTCCAAAGCGTCGTTCAACAAG
ATGCTGCAGGCTCAGAGCATAAAGGCACAGAAGTCGTTGGAGGAGGCGGA
AGCCGCCGCACGGGCCTCTGACCCTTCCATCTATGATTACGACGCTGTGT
ACGATGAGATACACGCCAAAAGAGAAGAGCGAGATAACATGGCAGCTGAA
GCAGCAAAGGAGGAAAAGAAAACATCGCGGTACATCACAAATTTGAAGCG
GGCGGCAGAATTGAAGAAGCAAGAGCAAGATCGATTTTACGAGCGTCGTT
TGGCGAAAGAGCGCAAAGAGGAAGACGCGCTATACAAAGACAAGGACGTG
TTTGTGACCAGTGCCTACAAAAAAAAGCTGATGGAGACGCAGAAATGGGA
GACGATCGACAGGTTGGAAGAAGAGGCGGCCCGTCGCCGGGAGGAAGAAG
CAGGCGGCAAAGGAGCTCCTGGGGGCGGGAGTGGAATGGACGCCTTCTTT
TCGAACTTACTGACGAAGAACATTGCCATGGGCGCAGATGTGAAAGTGGC
TGCACGCTCGGCCTACACTGTCGGATCCAAGCAACAAGAATCTGCGTTTG
GCACATCCTTGCCCTCCGCGACCTCCACAGCTGCAGAGACCGTCGATAAT
AAGGACGTCTTGGATCCCTCCAGTCGCGTTGTGGACCATGGTGGTGCGTC
TCATAGACGAGGGGAAGAGGCAGATACGGGCAAAAGAGCAGCAATCACGG
CTCCCTCCGGGGAAGAGTTTGTGGATAAACGGCAACGATTGGCGACAATA
TCGCCGCCACAACTGCCGTTACCAAGAGAGGAACGTCATCACCACGATGC
AGGAGAAGCGAAGACAGCAAGTCCAGCTGATGTAAATCCAGAGGAGAGAA
AAAGATCAAAGGAAGAAGCGATTCAAAAGGCAAGGGAGCGGTTTTTGGCA
CGCAAGAAAGGCGAGGTACACAACGAAAACATCACTGAGTCATAAAAAAC
GTTTTGGATGTTTTAGCCCCTCAAAGTAATTAAATATTAAATGTGATCAT
GA
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protein sequence of rna8348

>rna8348-protein ID=rna8348-protein|Name=rna8348|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MLIHLAQFGASRLPSSVTRQSIFRHFVAATASCFLLSHSARAFGSHLAMS
ASPGPITIVTGSNKGIGLEILKKLAPTSSVAILAARNPSLGEQAAQELRD
HGLENVKYRPLDVSSAESIEHFVKEIQKDYGRADILVNNAGIAFKGRDPT
PFRDQAAPTFKTNFWGTVELIDAMTPLLRKSTGCPCIVNVASQSGRLSIL
DTDRGKQAEISSPILTRDRLFELVRQFEHDVRTGTHAENGWPNTCYGMSK
LALIAFGRVFARNEMEGGTEKEGKTSIWLASCCPGWCDTDMSSHSGPRTA
EHGARTPAWLAMEGRQQGATAGGFFYDEKEIQW
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mRNA from alignment at KK037248.1:439742..441330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8348 ID=rna8348|Name=rna8348|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp|location=Sequence derived from alignment at KK037248.1:439742..441330+ (Nannochloropsis gaditana)
TGGCTTGCTTAGCAGCTCAAGTAAGACTTATCTCCTTTGAATCATCTCTG
TGTTCCGTTTTTCCACTTGAAGCAgatttaacctccccacccccttcgcT
CAGACGCGTCGCAATACGGTGGGGCACCTGCGATTGAAAAACATGTATCA
CAATCAACACTCGCAGTACCAACTTTATTTCTTGTGATTTTAGGGTGTTC
CACCTCATGCTCATCCATTTGGCGCAATTTGGCGCTTCTCGACTACCATC
TTCGGTCACCAGACAATCCATTTTCCGTCACTTCGTTGCTGCAACTgcct
cttgcttcctcctgagTCATTCGGCACGTGCTTTCGGCTCTCATCTTGCG
ATGTCCGCATCACCTGGCCCAATTACTATTGTGACTGGCAGTAACAAGGG
GATAGGCCTGGAAATCCTTAAAAAACTAGCCCCTACTTCTTCCGTTGCCA
TATTAGCTGCACGCAACCCCTCTTTGGGAGAACAGGCTGCACAAGAGCTG
CGTGATCATGGTCTCGAAAATGTGAAATATCGTCCTTTGGACGTTTCTTC
TGCGGAATCCATCGAACATTTTGTAAAAGAAATTCAAAAAGACTACGGAC
GGGCGGACATCCTGGTCAACAACGCAGGTAGACACCTCAACGCGCTTGGC
CTTTAAACTTACCGTTTGTAACTCGGCTTTTTTTATACATGTCTCCTATC
GATTAAGGCAGTTGCATCATGTTTATAATTTTATCTATATGTTTTGCCTT
TATACCGAAATTTTGACGCTCGACATCTATTTTACTTAGGTATCGCATTC
AAAGGTCGGGATCCGACCCCCTTTCGTGATCAAGCCGCACCGACGTTCAA
AACCAACTTTTGGGGCACTGTGGAACTTATAGATGCCATGACTCCGCTGC
TTCGAAAGTCGACCGGCTGTCCTTGCATTGTGAATGTGGCCAGCCAGAGT
GGCCGGTTGAGCATCCTGGACACGGACCGGGGGAAACAGGCAGAAATATC
GTCGCCTATTTTGACACGCGACCGTCTTTTCGAGCTTGTGCGACAATTTG
AACACGACGTAAGGACGGGGACACACGCTGAAAATGGGTGGCCGAACACG
TGCTATGGAATGAGCAAATTGGCTTTGATCGCGTTTGGCAGGGTTTTCGC
GAGAAACGAAATGGAAGGCGGCacagagaaagaggggaagacgtcCATCT
GGTTGGCTTCCTGCTGCCCGGGCTGGTGCGACACGGACATGAGCAGCCAC
AGTGGACCTCGGACTGCCGAGCACGGAGCGCGGACGCCGGCATGGttggc
gatggagggaagacagcAAGGCGCTACGGCAGGGGGGTTCTTTTACGATG
AAAAGGAGATTCAGTGGTGAGCGTACGGGGCAATTCAAATTAAGAATTTA
ATAAACATGTAAGACCATAGCAAGCTCGCACTATGAAACTCAAGGCGTAG
AAAGGTGAGACAAAATTGCACATGTAACAGGCATTTACACTGGCTATTTT
CTTGCTATCACGTTACTGGTTGGCGCCATGAGCTTGTACTGAGAAAGTTT
CGACGCCGCCCGTGATCACAATGCTCCTGCCGTTGTAGA
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Coding sequence (CDS) from alignment at KK037248.1:439742..441330+

>rna8348 ID=rna8348|Name=rna8348|organism=Nannochloropsis gaditana|type=CDS|length=2004bp|location=Sequence derived from alignment at KK037248.1:439742..441330+ (Nannochloropsis gaditana)
ATGCTCATCCATTTGGCGCAATTTGGCGCTTCTCGACTACCATCTTCGGT
CACCAGACAATCCATTTTCCGTCACTTCGTTGCTGCAACTgcctcttgct
tcctcctgagTCATTCGGCACGTGCTTTCGGCTCTCATCTTGCGATGTCC
GCATCACCTGGCCCAATTACTATTGTGACTGGCAGTAACAAGGGGATAGG
CCTGGAAATCCTTAAAAAACTAGCCCCTACTTCTTCCGTTGCCATATTAG
CTGCACGCAACCCCTCTTTGGGAGAACAGGCTGCACAAGAGCTGCGTGAT
CATGGTCTCGAAAATGTGAAATATCGTCCTTTGGACGTTTCTTCTGCGGA
ATCCATCGAACATTTTGTAAAAGAAATTCAAAAAGACTACGGACGGGCGG
ACATCCTGGTCAACAACGCAGGTATCGCATTCAAAGGTCGGGATCCGACC
CCCTTTCGTGATCAAGCCGCACCGACGTTCAAAACCAACTTTTGGGGCAC
TGTGGAACTTATAGATGCCATGACTCCGCTGCTTCGAAAGTCGACCGGCT
GTCCTTGCATTGTGAATGTGGCCAGCCAGAGTGGCCGGTTGAGCATCCTG
GACACGGACCGGGGGAAACAGGCAGAAATATCGTCGCCTATTTTGACACG
CGACCGTCTTTTCGAGCTTGTGCGACAATTTGAACACGACGTAAGGACGG
GGACACACGCTGAAAATGGGTGGCCGAACACGTGCTATGGAATGAGCAAA
TTGGCTTTGATCGCGTTTGGCAGGGTTTTCGCGAGAAACGAAATGGAAGG
CGGCacagagaaagaggggaagacgtcCATCTGGTTGGCTTCCTGCTGCC
CGGGCTGGTGCGACACGGACATGAGCAGCCACAGTGGACCTCGGACTGCC
GAGCACGGAGCGCGGACGCCGGCATGGttggcgatggagggaagacagcA
AGGCGCTACGGCAGGGGGGTTCTTTTACGATGAAAAGGAGATTCAGTGGT
GAATGCTCATCCATTTGGCGCAATTTGGCGCTTCTCGACTACCATCTTCG
GTCACCAGACAATCCATTTTCCGTCACTTCGTTGCTGCAACTgcctcttg
cttcctcctgagTCATTCGGCACGTGCTTTCGGCTCTCATCTTGCGATGT
CCGCATCACCTGGCCCAATTACTATTGTGACTGGCAGTAACAAGGGGATA
GGCCTGGAAATCCTTAAAAAACTAGCCCCTACTTCTTCCGTTGCCATATT
AGCTGCACGCAACCCCTCTTTGGGAGAACAGGCTGCACAAGAGCTGCGTG
ATCATGGTCTCGAAAATGTGAAATATCGTCCTTTGGACGTTTCTTCTGCG
GAATCCATCGAACATTTTGTAAAAGAAATTCAAAAAGACTACGGACGGGC
GGACATCCTGGTCAACAACGCAGGTATCGCATTCAAAGGTCGGGATCCGA
CCCCCTTTCGTGATCAAGCCGCACCGACGTTCAAAACCAACTTTTGGGGC
ACTGTGGAACTTATAGATGCCATGACTCCGCTGCTTCGAAAGTCGACCGG
CTGTCCTTGCATTGTGAATGTGGCCAGCCAGAGTGGCCGGTTGAGCATCC
TGGACACGGACCGGGGGAAACAGGCAGAAATATCGTCGCCTATTTTGACA
CGCGACCGTCTTTTCGAGCTTGTGCGACAATTTGAACACGACGTAAGGAC
GGGGACACACGCTGAAAATGGGTGGCCGAACACGTGCTATGGAATGAGCA
AATTGGCTTTGATCGCGTTTGGCAGGGTTTTCGCGAGAAACGAAATGGAA
GGCGGCacagagaaagaggggaagacgtcCATCTGGTTGGCTTCCTGCTG
CCCGGGCTGGTGCGACACGGACATGAGCAGCCACAGTGGACCTCGGACTG
CCGAGCACGGAGCGCGGACGCCGGCATGGttggcgatggagggaagacag
cAAGGCGCTACGGCAGGGGGGTTCTTTTACGATGAAAAGGAGATTCAGTG
GTGA
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Synonyms
Publications