rna8346, rna8346 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8346
Unique Name	rna8346
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1683
Alignment location	KK037248.1:435194..437748 -

Link to JBrowse

Properties


Property Name	Value
Product	conserved uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100208g8.7570.mrna
Orig protein id	gnl\|cribi\|Naga_100208g8.7570
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:435194..437748 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100208g8	gene8085	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22352.1	cds8319	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8346	rna8346-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:435194..437748-
coding sequence from alignment at KK037248.1:435194..437748-

mRNA sequence

>rna8346 ID=rna8346|Name=rna8346|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp
ATGGCTGAGACTGTGGTCAATGAAATCAAGCGCTTGGTACTCGTGACCGA
CGCATGGCAACCTCAAGTCAACGGCGTCGTCCGGACACTCAACACAACTA
CCCGTGTCCTGCGGGCATTAGGCGTCGAAGTACACGTCATTAGCCCCCTC
GAGTTCAATACTGTACCCTGTCCTACATATCCTAGCATTCAACTGGCCGT
CCTTCCGGGCGAAAAAGTGCGTCGTCGCATCACTGAGCTAGCTCCGCACG
CCCTGCACGTGGCCACGGAAGGGCCGCTGGGATGGGCTGCCCGAAATTTC
GCCGTGGAGCTCGGCATTCCTTTCACGACTGCTGTTCACACTCGCTTTCC
AGAATACGTCTATGCACGGCTGGCTTTGCCTCTCAGCGTGACATACCGCT
ACTTGCACTGGTTCCATAGTCATTCCAAATCTATCATGGTTCCTACCCCC
ATGGTGAAGCGTGACTTGGAGAGCCACGCTTTTGAGCATGTGCAGCTTTG
GAGCCGTGGTGTTGACACGGAAATTTTCAGACCGCCTAGCCCAAACACTC
GCATGTCACGGAGTGATTCTGAGTATCCCATATTCTTGTACGCAGGCCGC
GTGGCCGTTGAGAAGAATATGGAAGCTTTCTTGGCACTGGACCTGCCCGG
GCAAAAATGGGTGGTAGGCGACGGACCAGCCCTGCAGGGGCTTCAAGAAG
CTTACCCGAATGCCCGATATTTCGGTTTTTTAAATCAGACGGAGCTTGCC
AAGCTGTACCAGCAGGCCAACGTGTTCGTTTTCCCTAGCAAGACCGACAC
TTTTGGATTGGTGCTGCTTGAGGCCATGGCCACGGGATTGCCGGTAGCAG
CCTACCCAGTTTCTGGACCTATCGACGTGGTCGGTACATCCGGGGCAGGA
GTGTTGGACGAAAACCTGCGCTCCGCGTGCATGCGGGCTCTGGAGATCGA
CCCGGCCGTGGCTAGGGCGCACGCAGAGAAGTATTCGTGGACTGCAGCCA
CGCGAATGTTTGCCAGAAATCTTCAATACATCTCCCCCTTCGTCTTTGCC
AAAGGCGTACAGGAGTGGACCAGTGCCCGGTTCCTGGATGATGGGAGCAA
CGACTTAGTCTCATTCTTGCCCCCTCATTTGGTGGAGTGGCTGGGGAAGA
ATGATGGAATAGAACAGGCAACGGAGCCACAAGCAGGGGCCCTAGTGGAG
CCGCTACCAGGCTTGCCTTGCTCTGGCGACGGGCCAATCCCGCCTCCTTG
TTCAACGGAAGCTTCTGATTCGATGGCCTCCTACACATCAAGCAGCAGTG
GGTCGAGCACCAATAGCAGCGGCAGTGGCACGAGCACGCCGTGCCTGAGG
GCGGCGACGGCGGAGGACCCATTTGTAATTTCTGGGAGTGGTGGGAAGGG
CTCAGAATTGGCTCTTGGCGTGTATCATTACGAAAGCACTTCCTGGGCGT
ACCTGATGGTGGTTTGTGTCGGGGTGACAATGGTAGGAAACTATTTTTTC
TCTTTCTTCTTCAAGCCCCGGGGCGGGAAAACCCCAGGCTCAATCAAGAG
GCCCGCAGGATATCGACGGCCACTAAGTCTACCGTCAGAGGACGGTCGAA
GCGTCGGAAGCGTAACCCCACCTCTGTCGCCAGCCTCGACTTGTAGCTAC
TCCGTTTCTTCCACGGAAGAAAGTCTGTGGTAG

protein sequence of rna8346

>rna8346-protein ID=rna8346-protein|Name=rna8346|organism=Nannochloropsis gaditana|type=polypeptide|length=687bp
MNYLLGGGGPVRPNLPPHLMDEGERAAGLVEKATSDILLAVDWAMNMEVV
DALNRSSEQAVKREIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVH
KEVATPKFMATMARVARTYSERTGKENLQVADKAMDLIQSWGEAFLPMAH
QLPLFSQTYHQLRREGLTFRTQYDETKVPIMTPPPTAPTHRGSGEFAFEG
ALEGESPGRVADQQGGESLLKMVENSESMLQDILYSIESSKELGSGNEVL
HAVVGQCAKLSRACQESIEAKVLSGAEDVEVYLAANDQLQAALQLYEGMK
AGTVALPLPQDRRPPGAVGQGEERELMSFDDDFLTGLGSEISGKDSKLSA
NEMQKKGDEAGGGKQASVPSVSPMLPPSRRDSISRSRRGSRGSAGSRGAG
DDLLDLSNLDLASTANTGGRGEGGAQLGLETAVGPSPHDRDPWRATPPQI
APASQTLTASASMQAADPFASGGPLPILPPPRSLGSPPTQASTNASGSLA
ANGRDNTITDMHSQIPLTTLTPQPSLLVAGGSVGMQTTGMTGGWDEGELK
GSNPSGAPHRMSLLSSSMNAQAVPSSHTSTGGFTSLGSSQSGGVTGGFVS
GEGSMAHQTPFQPVKPQSQQQKQNGKGQDFSDWLPQPQQQQQLQWPPVVQ
QQTMQQGQRVVSTGLSTTQQHDRQQQQQQENPFDAFM

mRNA from alignment at KK037248.1:435194..437748-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8346 ID=rna8346|Name=rna8346|organism=Nannochloropsis gaditana|type=mRNA|length=2555bp|location=Sequence derived from alignment at KK037248.1:435194..437748- (Nannochloropsis gaditana)
GTAGGCGGCTTGTGCGAGGTCCTTGACGGGACAGGGGAAGTTCAGAGAAC
CCCCGACGACTTTCTCTTTCCTACTCCCCTTCTCAAACGCGCACCGCGCC
AATCTTACCGTTGACCCACCGCATACACGCATGCACTTCCAGGTGGGGCA
CAATTATTGACGGGACGTGGCCTTGTAGCAAGGTGAACGGCGGCAAAACC
TGGTGAGCTCTTCTTCTTTCCTCTCCCGACTGAACTCTCGTCATCAAGAA
GAACAGCACGTTCAACCTCGACCTTCCATTGGCACGTTCCGTCCACGCAA
ATCATCTATTGTCGCCGTGAAAATCCGTAGAGAATCCGAGAAATATGAAC
TACCTTCTGGGCGGCGGCGGTCCTGTCCGCCCTAATTTACCTCCGCACCT
CATGGATGAGGGAGAGCGGGCGGCCGGCCTAGTTGAGAAAGCAACGTCGG
ACATCCTTCTGGCCGTGGATTGGGCAATGAATATGGAAGTAGTGGACGCC
TTAAACCGTAGCAGCGAGCAGGCTGTTAAACGTGAGATAATTCGGCAGAT
TCGCAAACGTTTGCAGCATCGGTCTACCCGCGTGGTGCACATGGCTTTGG
AATTAATCGAGACGGTGGTGAAAAATTGTGGACCCTCCGTGCACAAAGAA
GTGGCCACGCCAAAATTCATGGCAACGATGGCCAGGGTAGCGAGAACATA
TTCAGAGCGGACGGGTAAGGAGAATTTGCAGGTGGCCGACAAGGCTATGG
ATCTGATTCAGTCGTGGGGCGAGGCCTTCTTGCCCATGGCACATCAGTTG
CCTCTCTTCTCCCAGACGTACCATCAGCTGCGCAGGGAAGGTTTGACATT
TCGGACTCAATACGACGAAACCAAAGTTCCCATTATGACCCCTCCCCCTA
CCGCGCCTACGCACCGAGGCAGCGGAGAATTTGCCTTTGAGGGGGCGTTG
GAAGGGGAAAGCCCAGGCAGGGTGGCCGATCAGCAAGGGGGGGAGTCTTT
GCTTAAAATGGTGGAGAACAGCGAATCTATGCTACAGGATATCCTCTACT
CGATAGAGTCTTCGAAAGAGCTGGGCTCGGGGAACGAAGTGCTCCATGCC
GTTGTGGGTCAGTGCGCCAAACTCAGCCGGGCCTGTCAGGAGAGCATCGA
GGCCAAGGTCCTGTCGGGGGCTGAGGATGTGGAAGTGTATTTGGCGGCGA
ATGATCAGTTGCAGGCCGCCTTGCAGCTGTATGAGGGCATGAAAGCAGGG
ACCGTGGCCTTGCCTCTACCACAGGACCGACGGCCCCCCGGGGCAGTAGG
ACAAGGGGAGGAACGGGAGCTTATGTCGTTTGACGACGATTTCTTGACGG
GCCTTGGGAGCGAAATATCGGGCAAAGACTCCAAGCTCTCAGCGAATGAG
ATGCAGAAGAAGGGGGACGAGGCGGGCGGAGGCAAGCAAGCTTCCGTGCC
GTCGGTCTCGCCCATGTTGCCACCCTCCCGCCGGGACAGTATCAGCCGCA
GCCGCCGCGGATCCCGGGGGAGCGCGGGAAGCCGTGGGGCTGGTGATGAC
CTTCTGGACCTAAGTAACTTGGATTTGGCCAGCACCGCGAATACTGGAGG
TCGGGGGGAGGGGGGGGCTCAGCTCGGATTGGAAACGGCGGTCGGCCCCT
CCCCTCACGACAGGGACCCCTGGCGCGCCACTCCCCCCCAGATCGCCCCA
GCGTCGCAAACACTCACTGCTAGCGCCTCCATGCAAGCTGCGGATCCGTT
CGCATCGGGGGGACCGCTTCCCATCCTTCCTCCTCCCCGTTCTCTGGGCA
GCCCGCCAACGCAGGCCTCCACGAATGCGAGCGGCTCCTTGGCTGCTAAT
GGCAGAGACAACACAATCACCGACATGCACTCTCAAATTCCTTTGACAAC
TTTGACGCCTCAGCCATCTCTGCTAGTAGCTGGAGGGAGTGTCGGAATGC
AGACGACGGGGATGACGGGTGGCTGGGACGAGGGGGAATTGAAAGGCAGC
AACCCGTCCGGGGCACCGCACAGGATGTCTTTGTTGTCATCTTCGATGAA
TGCACAAGCTGTGCCATCATCTCATACTTCCACGGGAGGGTTCACGAGCC
TAGGTTCGAGTCAAAGTGGGGGTGTGACAGGCGGCTTTGTGTCGGGGGAA
GGAAGTATGGCACACCAAACGCCTTTTCAACCCGTGAAGCCGCAATCGCA
GCAACAAAAGCAAAACGGTAAGGGTCAGGATTTTAGCGACTGGTTGCCAC
AGCCACAACAGCAACAGCAGTTGCAGTGGCCGCCTGTGGTCCAGCAGCAA
ACCATGCAACAGGGGCAACGGGTTGTATCAACCGGGTTGTCGACGACGCA
GCAACATGACCGACAGCAGCAACAGCAGCAAGAAAACCCTTTTGATGCAT
TCATGTAATGATTTAAGGTTGTGATGGCATTTGTAAGAAGAAATGGACGT
GTAGAAATAGCAACGAAACGTTTTTTGGTGTTCTTTTGGGGCTCATGATG
CTTTCCATTTTGAACTTTTGAATCGCCCAAACTTCAAGCGGTCGGGACGC
GTACA

Coding sequence (CDS) from alignment at KK037248.1:435194..437748-

>rna8346 ID=rna8346|Name=rna8346|organism=Nannochloropsis gaditana|type=CDS|length=2064bp|location=Sequence derived from alignment at KK037248.1:435194..437748- (Nannochloropsis gaditana)
ATGAACTACCTTCTGGGCGGCGGCGGTCCTGTCCGCCCTAATTTACCTCC
GCACCTCATGGATGAGGGAGAGCGGGCGGCCGGCCTAGTTGAGAAAGCAA
CGTCGGACATCCTTCTGGCCGTGGATTGGGCAATGAATATGGAAGTAGTG
GACGCCTTAAACCGTAGCAGCGAGCAGGCTGTTAAACGTGAGATAATTCG
GCAGATTCGCAAACGTTTGCAGCATCGGTCTACCCGCGTGGTGCACATGG
CTTTGGAATTAATCGAGACGGTGGTGAAAAATTGTGGACCCTCCGTGCAC
AAAGAAGTGGCCACGCCAAAATTCATGGCAACGATGGCCAGGGTAGCGAG
AACATATTCAGAGCGGACGGGTAAGGAGAATTTGCAGGTGGCCGACAAGG
CTATGGATCTGATTCAGTCGTGGGGCGAGGCCTTCTTGCCCATGGCACAT
CAGTTGCCTCTCTTCTCCCAGACGTACCATCAGCTGCGCAGGGAAGGTTT
GACATTTCGGACTCAATACGACGAAACCAAAGTTCCCATTATGACCCCTC
CCCCTACCGCGCCTACGCACCGAGGCAGCGGAGAATTTGCCTTTGAGGGG
GCGTTGGAAGGGGAAAGCCCAGGCAGGGTGGCCGATCAGCAAGGGGGGGA
GTCTTTGCTTAAAATGGTGGAGAACAGCGAATCTATGCTACAGGATATCC
TCTACTCGATAGAGTCTTCGAAAGAGCTGGGCTCGGGGAACGAAGTGCTC
CATGCCGTTGTGGGTCAGTGCGCCAAACTCAGCCGGGCCTGTCAGGAGAG
CATCGAGGCCAAGGTCCTGTCGGGGGCTGAGGATGTGGAAGTGTATTTGG
CGGCGAATGATCAGTTGCAGGCCGCCTTGCAGCTGTATGAGGGCATGAAA
GCAGGGACCGTGGCCTTGCCTCTACCACAGGACCGACGGCCCCCCGGGGC
AGTAGGACAAGGGGAGGAACGGGAGCTTATGTCGTTTGACGACGATTTCT
TGACGGGCCTTGGGAGCGAAATATCGGGCAAAGACTCCAAGCTCTCAGCG
AATGAGATGCAGAAGAAGGGGGACGAGGCGGGCGGAGGCAAGCAAGCTTC
CGTGCCGTCGGTCTCGCCCATGTTGCCACCCTCCCGCCGGGACAGTATCA
GCCGCAGCCGCCGCGGATCCCGGGGGAGCGCGGGAAGCCGTGGGGCTGGT
GATGACCTTCTGGACCTAAGTAACTTGGATTTGGCCAGCACCGCGAATAC
TGGAGGTCGGGGGGAGGGGGGGGCTCAGCTCGGATTGGAAACGGCGGTCG
GCCCCTCCCCTCACGACAGGGACCCCTGGCGCGCCACTCCCCCCCAGATC
GCCCCAGCGTCGCAAACACTCACTGCTAGCGCCTCCATGCAAGCTGCGGA
TCCGTTCGCATCGGGGGGACCGCTTCCCATCCTTCCTCCTCCCCGTTCTC
TGGGCAGCCCGCCAACGCAGGCCTCCACGAATGCGAGCGGCTCCTTGGCT
GCTAATGGCAGAGACAACACAATCACCGACATGCACTCTCAAATTCCTTT
GACAACTTTGACGCCTCAGCCATCTCTGCTAGTAGCTGGAGGGAGTGTCG
GAATGCAGACGACGGGGATGACGGGTGGCTGGGACGAGGGGGAATTGAAA
GGCAGCAACCCGTCCGGGGCACCGCACAGGATGTCTTTGTTGTCATCTTC
GATGAATGCACAAGCTGTGCCATCATCTCATACTTCCACGGGAGGGTTCA
CGAGCCTAGGTTCGAGTCAAAGTGGGGGTGTGACAGGCGGCTTTGTGTCG
GGGGAAGGAAGTATGGCACACCAAACGCCTTTTCAACCCGTGAAGCCGCA
ATCGCAGCAACAAAAGCAAAACGGTAAGGGTCAGGATTTTAGCGACTGGT
TGCCACAGCCACAACAGCAACAGCAGTTGCAGTGGCCGCCTGTGGTCCAG
CAGCAAACCATGCAACAGGGGCAACGGGTTGTATCAACCGGGTTGTCGAC
GACGCAGCAACATGACCGACAGCAGCAACAGCAGCAAGAAAACCCTTTTG
ATGCATTCATGTAA

Synonyms

Publications