rna8345, rna8345 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8345
Unique Name	rna8345
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	264
Alignment location	KK037248.1:433061..434743 -

Link to JBrowse

Properties


Property Name	Value
Product	glycosyl transferase
Orig transcript id	gnl\|cribi\|Naga_100208g9.7572.mrna
Orig protein id	gnl\|cribi\|Naga_100208g9.7572
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:433061..434743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100208g9	gene8084	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22354.1	cds8318	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8345	rna8345-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:433061..434743-
coding sequence from alignment at KK037248.1:433061..434743-

mRNA sequence

>rna8345 ID=rna8345|Name=rna8345|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGTCAAACGTGTCAATTGGTATAATTGAGGTATGTGAAGCCTCGTCCAT
TGCACAGAGCTCTGAAGGATTTATACCATGGCAGTTGTGTCGAACAATTG
AACTTTTAAGCTTTCAAACTAAGTTAAATAAGCCAAGTGCCGAGCCTAGT
AACAAATGCAGATACAAGAGTAAACCGGCGCGGAGATCTATTTTTCAAAA
ACAAGCTCACAGCCGGTTAAGAGCTCCCATTGTTGTGTTACGCGGCATAA
TTTTATATGCATGA

protein sequence of rna8345

>rna8345-protein ID=rna8345-protein|Name=rna8345|organism=Nannochloropsis gaditana|type=polypeptide|length=560bp
MAETVVNEIKRLVLVTDAWQPQVNGVVRTLNTTTRVLRALGVEVHVISPL
EFNTVPCPTYPSIQLAVLPGEKVRRRITELAPHALHVATEGPLGWAARNF
AVELGIPFTTAVHTRFPEYVYARLALPLSVTYRYLHWFHSHSKSIMVPTP
MVKRDLESHAFEHVQLWSRGVDTEIFRPPSPNTRMSRSDSEYPIFLYAGR
VAVEKNMEAFLALDLPGQKWVVGDGPALQGLQEAYPNARYFGFLNQTELA
KLYQQANVFVFPSKTDTFGLVLLEAMATGLPVAAYPVSGPIDVVGTSGAG
VLDENLRSACMRALEIDPAVARAHAEKYSWTAATRMFARNLQYISPFVFA
KGVQEWTSARFLDDGSNDLVSFLPPHLVEWLGKNDGIEQATEPQAGALVE
PLPGLPCSGDGPIPPPCSTEASDSMASYTSSSSGSSTNSSGSGTSTPCLR
AATAEDPFVISGSGGKGSELALGVYHYESTSWAYLMVVCVGVTMVGNYFF
SFFFKPRGGKTPGSIKRPAGYRRPLSLPSEDGRSVGSVTPPLSPASTCSY
SVSSTEESLW

mRNA from alignment at KK037248.1:433061..434743-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8345 ID=rna8345|Name=rna8345|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp|location=Sequence derived from alignment at KK037248.1:433061..434743- (Nannochloropsis gaditana)
ATGGCTGAGACTGTGGTCAATGAAATCAAGCGCTTGGTACTCGTGACCGA
CGCATGGCAACCTCAAGTCAACGGCGTCGTCCGGACACTCAACACAACTA
CCCGTGTCCTGCGGGCATTAGGCGTCGAAGTACACGTCATTAGCCCCCTC
GAGTTCAATACTGTACCCTGTCCTACATATCCTAGCATTCAACTGGCCGT
CCTTCCGGGCGAAAAAGTGCGTCGTCGCATCACTGAGCTAGCTCCGCACG
CCCTGCACGTGGCCACGGAAGGGCCGCTGGGATGGGCTGCCCGAAATTTC
GCCGTGGAGCTCGGCATTCCTTTCACGACTGCTGTTCACACTCGCTTTCC
AGAATACGTCTATGCACGGCTGGCTTTGCCTCTCAGCGTGACATACCGCT
ACTTGCACTGGTTCCATAGTCATTCCAAATCTATCATGGTTCCTACCCCC
ATGGTGAAGCGTGACTTGGAGAGCCACGCTTTTGAGCATGTGCAGCTTTG
GAGCCGTGGTGTTGACACGGAAATTTTCAGACCGCCTAGCCCAAACACTC
GCATGTCACGGAGTGATTCTGAGTATCCCATATTCTTGTACGCAGGCCGC
GTGGCCGTTGAGAAGAATATGGAAGCTTTCTTGGCACTGGACCTGCCCGG
GCAAAAATGGGTGGTAGGCGACGGACCAGCCCTGCAGGGGCTTCAAGAAG
CTTACCCGAATGCCCGATATTTCGGTTTTTTAAATCAGACGGAGCTTGCC
AAGCTGTACCAGCAGGCCAACGTGTTCGTTTTCCCTAGCAAGACCGACAC
TTTTGGATTGGTGCTGCTTGAGGCCATGGCCACGGGATTGCCGGTAGCAG
CCTACCCAGTTTCTGGACCTATCGACGTGGTCGGTACATCCGGGGCAGGA
GTGTTGGACGAAAACCTGCGCTCCGCGTGCATGCGGGCTCTGGAGATCGA
CCCGGCCGTGGCTAGGGCGCACGCAGAGAAGTATTCGTGGACTGCAGCCA
CGCGAATGTTTGCCAGAAATCTTCAATACATCTCCCCCTTCGTCTTTGCC
AAAGGCGTACAGGAGTGGACCAGTGCCCGGTTCCTGGATGATGGGAGCAA
CGACTTAGTCTCATTCTTGCCCCCTCATTTGGTGGAGTGGCTGGGGAAGA
ATGATGGAATAGAACAGGCAACGGAGCCACAAGCAGGGGCCCTAGTGGAG
CCGCTACCAGGCTTGCCTTGCTCTGGCGACGGGCCAATCCCGCCTCCTTG
TTCAACGGAAGCTTCTGATTCGATGGCCTCCTACACATCAAGCAGCAGTG
GGTCGAGCACCAATAGCAGCGGCAGTGGCACGAGCACGCCGTGCCTGAGG
GCGGCGACGGCGGAGGACCCATTTGTAATTTCTGGGAGTGGTGGGAAGGG
CTCAGAATTGGCTCTTGGCGTGTATCATTACGAAAGCACTTCCTGGGCGT
ACCTGATGGTGGTTTGTGTCGGGGTGACAATGGTAGGAAACTATTTTTTC
TCTTTCTTCTTCAAGCCCCGGGGCGGGAAAACCCCAGGCTCAATCAAGAG
GCCCGCAGGATATCGACGGCCACTAAGTCTACCGTCAGAGGACGGTCGAA
GCGTCGGAAGCGTAACCCCACCTCTGTCGCCAGCCTCGACTTGTAGCTAC
TCCGTTTCTTCCACGGAAGAAAGTCTGTGGTAG

Coding sequence (CDS) from alignment at KK037248.1:433061..434743-

>rna8345 ID=rna8345|Name=rna8345|organism=Nannochloropsis gaditana|type=CDS|length=1683bp|location=Sequence derived from alignment at KK037248.1:433061..434743- (Nannochloropsis gaditana)
ATGGCTGAGACTGTGGTCAATGAAATCAAGCGCTTGGTACTCGTGACCGA
CGCATGGCAACCTCAAGTCAACGGCGTCGTCCGGACACTCAACACAACTA
CCCGTGTCCTGCGGGCATTAGGCGTCGAAGTACACGTCATTAGCCCCCTC
GAGTTCAATACTGTACCCTGTCCTACATATCCTAGCATTCAACTGGCCGT
CCTTCCGGGCGAAAAAGTGCGTCGTCGCATCACTGAGCTAGCTCCGCACG
CCCTGCACGTGGCCACGGAAGGGCCGCTGGGATGGGCTGCCCGAAATTTC
GCCGTGGAGCTCGGCATTCCTTTCACGACTGCTGTTCACACTCGCTTTCC
AGAATACGTCTATGCACGGCTGGCTTTGCCTCTCAGCGTGACATACCGCT
ACTTGCACTGGTTCCATAGTCATTCCAAATCTATCATGGTTCCTACCCCC
ATGGTGAAGCGTGACTTGGAGAGCCACGCTTTTGAGCATGTGCAGCTTTG
GAGCCGTGGTGTTGACACGGAAATTTTCAGACCGCCTAGCCCAAACACTC
GCATGTCACGGAGTGATTCTGAGTATCCCATATTCTTGTACGCAGGCCGC
GTGGCCGTTGAGAAGAATATGGAAGCTTTCTTGGCACTGGACCTGCCCGG
GCAAAAATGGGTGGTAGGCGACGGACCAGCCCTGCAGGGGCTTCAAGAAG
CTTACCCGAATGCCCGATATTTCGGTTTTTTAAATCAGACGGAGCTTGCC
AAGCTGTACCAGCAGGCCAACGTGTTCGTTTTCCCTAGCAAGACCGACAC
TTTTGGATTGGTGCTGCTTGAGGCCATGGCCACGGGATTGCCGGTAGCAG
CCTACCCAGTTTCTGGACCTATCGACGTGGTCGGTACATCCGGGGCAGGA
GTGTTGGACGAAAACCTGCGCTCCGCGTGCATGCGGGCTCTGGAGATCGA
CCCGGCCGTGGCTAGGGCGCACGCAGAGAAGTATTCGTGGACTGCAGCCA
CGCGAATGTTTGCCAGAAATCTTCAATACATCTCCCCCTTCGTCTTTGCC
AAAGGCGTACAGGAGTGGACCAGTGCCCGGTTCCTGGATGATGGGAGCAA
CGACTTAGTCTCATTCTTGCCCCCTCATTTGGTGGAGTGGCTGGGGAAGA
ATGATGGAATAGAACAGGCAACGGAGCCACAAGCAGGGGCCCTAGTGGAG
CCGCTACCAGGCTTGCCTTGCTCTGGCGACGGGCCAATCCCGCCTCCTTG
TTCAACGGAAGCTTCTGATTCGATGGCCTCCTACACATCAAGCAGCAGTG
GGTCGAGCACCAATAGCAGCGGCAGTGGCACGAGCACGCCGTGCCTGAGG
GCGGCGACGGCGGAGGACCCATTTGTAATTTCTGGGAGTGGTGGGAAGGG
CTCAGAATTGGCTCTTGGCGTGTATCATTACGAAAGCACTTCCTGGGCGT
ACCTGATGGTGGTTTGTGTCGGGGTGACAATGGTAGGAAACTATTTTTTC
TCTTTCTTCTTCAAGCCCCGGGGCGGGAAAACCCCAGGCTCAATCAAGAG
GCCCGCAGGATATCGACGGCCACTAAGTCTACCGTCAGAGGACGGTCGAA
GCGTCGGAAGCGTAACCCCACCTCTGTCGCCAGCCTCGACTTGTAGCTAC
TCCGTTTCTTCCACGGAAGAAAGTCTGTGGTAG

Synonyms

Publications