rna8343, rna8343 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8343
Unique Name	rna8343
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2098
Alignment location	KK037248.1:431001..432778 +

Link to JBrowse

Properties


Property Name	Value
Product	fructosamine ketosamine-3-kinase
Orig transcript id	gnl\|cribi\|Naga_100208g12.7575.mrna
Orig protein id	gnl\|cribi\|Naga_100208g12.7575
Gene	KT3K
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:431001..432778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
KT3K	gene8082	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8343	rna8343-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22357.1	cds8316	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:431001..432778+
coding sequence from alignment at KK037248.1:431001..432778+

mRNA sequence

>rna8343 ID=rna8343|Name=rna8343|organism=Nannochloropsis gaditana|type=mRNA|length=2098bp
CCCTCGTCCTGCGATAGGTTACACGGGCTGTCTGATAAGGCGCTTTAGGA
CGACTGATACTCGTCTCTTGAAAAGGAGGTACTTTGTTCGACGGAGTAAG
CTCATACCATTTTATTCCTATAGAAAGACAGGGGCAGCGGCAGGCGGGCG
TAATGCCTGTTTCCCCACCACCTTCGTTGCCTTTGCCGGACGAGGATACC
TGGTCGCTTCCAGCATTCAGTCTTCTATACCCCAAAATAAATTGCATTCG
ATGCAGCCTGCGCCTGGCGGGCGTATGCGATGCTGAAATACTTCGTGCCC
CGGAACGTCAACTCCGTGCCACCCTTTGCTCTGCGCAGGGTGCAGAAATA
AGCCATGCCACCTGCAGAATGTGTCCGCTTTGTTTGGGCATACTACAGTC
GTCAGGTGATAGGGAACTTGGCTCGGCTCTGTTAGATGCAATTTTAGCGC
AAATTAAAACGAAAAAGTACGTGTTGCCGACTGGCGGTGATAGCCCTGAC
ATGACACAACATAAAAGTACCACCGACCCTGTCGGTGAAATGGTTGCTGA
ACACTCCAAATACCTCCTGGAGAGAAAAGTTCCATTCATCCTAGGAGTCT
CACTGCCCGGTTCTGTGGCTATCCGGGACCGCGCCGCCCTTGAATGGGTA
GCGTGCGAGCAGCAAACTGGGCGTCACCAGGACCCGGGGCGGCGCCTGGA
CGTGAAAGAAATTCTGAAAGCAGTCTTGGAGTCATGCTTACCGAAGCATT
ATCCATGCTTGTACGCGGCATCTACTCCTTCCCCTGGGGCCCTGAGAGTG
GACCTCTCTTTCTGGCACGCGGGGGCCGACGAGGCGGACTACCACCAGGG
TGTGCGCATTCTTTTGCCGAACGCCACGGGGAAGGCCTTTAACCGTACCC
GGAAGCGCCGGCGACACGAGGAGAGCAATCAGGAAAACCTCTGTAATGCC
ACAGTGGTAGCGCGCGTCCTACAGGCGGCCACGGGTGACCCGAACGTGCG
GTCAGGCCTGGCTGTTTTTTTTGCGCGAAACCTGATGCCTCCTTCCACGC
ATTCGCCCACTGCGTACGCGGCGCTGGAGACGCCGGCCGCTTCTTCGGTC
CAAGTGACCCGAGAGGCAATCTTTCTGGCGGGCCGGTACCTAAAATTAAG
CCGAGAGATGCCGCAGACGTTGTGGGTGGTAGAGGGGGGAAGGCGAAAGG
GGAAAGCCTCGGTAGAGGAGGTAGTCGCAGAGCCCGTGCTCGATTGGACA
AGCGCGACCTCGGCCGTGCTGATAGGTTCGGGCAGAGAGGACATGGACGT
GAGGATGTTGGGAACCGGGCGGCCTTTCCTCCTCCGCGTGAACGACCCCC
GGCGGATCCCGGGGAGAGAGGAGGTGGCGGGCTTGGAGGCGGCAATCAAT
CAGACGACGGGCCTGAACTCGGGGGGGGACGTGCGAGTGCACGGGTTGCG
ACTCTCGGACAAGCATGAAGTGAAGGCAATGCACGCAGGGGCCACGGAGA
AGGTGAAGATGTACAGCTGTCGTGTTTGGGTGGGGGGCCGCGTGGACCGA
GCGCTCCTGGCTACTAGTCTGGAGGGGAGCAAGGAGCTAGTGGTAGCGCA
GAAAACGCCGATCCGGGTCTTACATCGCCGCGCGCTTTTGACTCGGCCTA
AGGTGATCCATGAGATGCGTTGCACGGATGTGAAGGTGGTGGAGGGCGGG
GAGGAGGGCGGGGAGGAAGGCGGGGAGATGGCTGTGGGAACGTACTTCAC
TTTGCATTTACGAACTTCCGCGGGCACCTATATCAAAGAATTTGTCCACG
GAGACATGGGAAGGACCAGGCCGAGCGTGGGCGACCTTTTGGGAGGCCTG
GAGGCGGATCTATTGGCCTTGGACGTGACGGGCATCGTGATGGAGGGCGA
GGAGGGGGAACGGGAGGAAGGAAAGGAACAAGAGGAGGAGGCAGGAGGAG
GCGTGAAAGGTGCCGAGATAAATGGGATCGTGGTGTAAGGAAATGATGTC
AATGTTGGTGCTTGGTGTCCTGTTGGTCCGAAGTCCAGCGAGACGAGCCT
GGCATCCGCCGCAAGGGCCTCCGACAAGGCAGTACGTGCTCAATTTCA

protein sequence of rna8343

>rna8343-protein ID=rna8343-protein|Name=rna8343|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MVSLIIARSMCEHIPPSHNVHGNTSVQAMRFTSPEGGRNASAVSLANFSY
LLRVLLLHTFAVVLLSSLSAWAFCPSLPALTPLLAQKTFAIPRISTPCSR
FTSASTALKMGLLYEAKAGTPLLEAMSQAIGQALHNDAKATVLEPTGGGG
FAGGGGANTGVAEDRKVGEKYFYKSTGSWGLDMLLAEYKGTKAMYDTHTI
RVPTPVAVGTSDAQAFVVFEYLAMGGTRGDAAGRMGRELAQMHRHTSKNG
QFGWDIDNTIGATPQPNGWQASWVEFWDEKRLGHMLKLCRREGHDFGQVE
RELRAKVKQILSEDGYSPAPSLLHGDLWTGNVAATGEGVPCIFDPAVYYG
DREADLAMTALFGSLAPAFYTAYMEEWPLEPGYEKRKVVYNLYHILNHIV
LFGGGYRSQAQRMIDQILKM

mRNA from alignment at KK037248.1:431001..432778+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8343 ID=rna8343|Name=rna8343|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp|location=Sequence derived from alignment at KK037248.1:431001..432778+ (Nannochloropsis gaditana)
CTAATGCTGTGCTTTGTCCCTATGTGATCACCTGTAATGGTATCACTCAT
TATAGCCAGATCGATGTGTGAAcatatccctccctcgcataACGTGCACG
GCAACACATCTGTACAGGCTATGCGTTTTACCAGTCCGGAGGGAGGTCGT
AACGCGTCGGCTGTCTCTCTGGCTAACTTCAGCTATCTTCTACGagtact
cctcctccacacgtTTGCTGTTGTATTACTCAGCTCGTTATCAGCTTGGG
CATtttgtccttctctccccgcgTTGACCCCACTGCTCGCACAAAAAACG
TTCGCCATCCCTAGAATTAGCACCCCCTGCTCTCGTTTTACAAGTGCTTC
TACAGCGTTGAAAATGGGTCTCCTTTACGAAGCTAAGGCCGGAACGCCAC
TCTTAGAAGCCATGTCTCAAGCTATTGGACAAGCACTCCACAACGATGCA
AAGGCCACCGTCCTGGAACCcaccggaggcggaggctttgccgggggggg
gggggctaaCACAGGCGTTGCCGAAGACAGAAAAGTAGGCGAGAAGTACT
TCTACAAATCGACGGGGTCATGGGGACTGGACATGCTTTTGGCAGAGTAT
AAGGGGACCAAGGCCATGTATGACACGCATACGATTCGGGTTCCCACCCC
TGTGGCTGTCGGAACCTCGGACGCTCAGGCATTTGTCGTTTTCGAATACT
TGGCCATGGGCGGAACAAGGTAAGGCTAGGGGATGAGAAAGTGGTTGAAG
AAAGGCGCAGATATTCTGTTATGAGCAACGACTGCTTGTTTGCCGTGCTA
GGAACCCGGATCTTCACACGGGCTCTCGCCAATTTTCGTGCTACCACGTT
TCACAGGGGAGACGCTGCGGGACGCATGGGCCGAGAACTGGCGCAGATGC
ACCGACACACAAGCAAGAATGGTCAATTCGGTTGGGATATCGATAATACG
ATTGGGGCAACCCCGCAACCGAATGGGTGGCAGGCGTCATGGGTTGAGTT
CTGGGACGAGAAGAGGCTGGGGCACATGTTGAAGTTGTGTCGCCGAGAAG
GACACGACTTTGGTCAAGTGGAGCGAGAGCTCCGCGCCAAGGTGAAGCAG
ATTTTGTCTGAGGACGGGTACAGTCCAGCGCCTTCCTTGCTGCATGGGGA
CCTCTGGACTGGAAACGTGGCTGCGACAGGAGAGGGCGTCCCGTGCATTT
TCGACCCTGCGGTCTACTACGGCGACAGGGAGGCAGACCTGGCCATGACA
GCCTTGTTCGGCTCCCTGGCCCCGGCGTTTTACACAGCCTACATGGAGGA
ATGGCCCCTGGAGCCGGGATatgagaagaggaaggtggtcTATAATTTGT
ACCACATCCTGAATCACATTGTCTTGTTCGGGGGGGGGTACCGGTCGCAG
GCCCAGAGGATGATAGATCAAATTCTTAAAATGTAAGGCCTACCACTTAT
CATGGGAGACTTTTTGAATCTCTATTTCAATCATGCATATAAAATTATGC
CGCGTAACACAACAATGGGAGCTCTTAACCGGCTGTGAGCTTGTTTTTGA
AAAATAGATCTCCGCGCCGGTTTACTCTTGTATCTGCATTTGTTACTAGG
CTCGGCACTTGGCTTATTTAACTTAGTTTGAAAGCTTAAAAGTTCAATTG
TTCGACACAACTGCCATGGTATAAATCCTTCAGAGCTCTGTGCAATGGAC
GAGGCTTCACATACCTCAATTATACCAATTGACACGTTTGACATGCAGAA
GCATGTAAATCATCATcatacacacaca

Coding sequence (CDS) from alignment at KK037248.1:431001..432778+

>rna8343 ID=rna8343|Name=rna8343|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at KK037248.1:431001..432778+ (Nannochloropsis gaditana)
ATGGTATCACTCATTATAGCCAGATCGATGTGTGAAcatatccctccctc
gcataACGTGCACGGCAACACATCTGTACAGGCTATGCGTTTTACCAGTC
CGGAGGGAGGTCGTAACGCGTCGGCTGTCTCTCTGGCTAACTTCAGCTAT
CTTCTACGagtactcctcctccacacgtTTGCTGTTGTATTACTCAGCTC
GTTATCAGCTTGGGCATtttgtccttctctccccgcgTTGACCCCACTGC
TCGCACAAAAAACGTTCGCCATCCCTAGAATTAGCACCCCCTGCTCTCGT
TTTACAAGTGCTTCTACAGCGTTGAAAATGGGTCTCCTTTACGAAGCTAA
GGCCGGAACGCCACTCTTAGAAGCCATGTCTCAAGCTATTGGACAAGCAC
TCCACAACGATGCAAAGGCCACCGTCCTGGAACCcaccggaggcggaggc
tttgccgggggggggggggctaaCACAGGCGTTGCCGAAGACAGAAAAGT
AGGCGAGAAGTACTTCTACAAATCGACGGGGTCATGGGGACTGGACATGC
TTTTGGCAGAGTATAAGGGGACCAAGGCCATGTATGACACGCATACGATT
CGGGTTCCCACCCCTGTGGCTGTCGGAACCTCGGACGCTCAGGCATTTGT
CGTTTTCGAATACTTGGCCATGGGCGGAACAAGGGGAGACGCTGCGGGAC
GCATGGGCCGAGAACTGGCGCAGATGCACCGACACACAAGCAAGAATGGT
CAATTCGGTTGGGATATCGATAATACGATTGGGGCAACCCCGCAACCGAA
TGGGTGGCAGGCGTCATGGGTTGAGTTCTGGGACGAGAAGAGGCTGGGGC
ACATGTTGAAGTTGTGTCGCCGAGAAGGACACGACTTTGGTCAAGTGGAG
CGAGAGCTCCGCGCCAAGGTGAAGCAGATTTTGTCTGAGGACGGGTACAG
TCCAGCGCCTTCCTTGCTGCATGGGGACCTCTGGACTGGAAACGTGGCTG
CGACAGGAGAGGGCGTCCCGTGCATTTTCGACCCTGCGGTCTACTACGGC
GACAGGGAGGCAGACCTGGCCATGACAGCCTTGTTCGGCTCCCTGGCCCC
GGCGTTTTACACAGCCTACATGGAGGAATGGCCCCTGGAGCCGGGATatg
agaagaggaaggtggtcTATAATTTGTACCACATCCTGAATCACATTGTC
TTGTTCGGGGGGGGGTACCGGTCGCAGGCCCAGAGGATGATAGATCAAAT
TCTTAAAATGTAAATGGTATCACTCATTATAGCCAGATCGATGTGTGAAc
atatccctccctcgcataACGTGCACGGCAACACATCTGTACAGGCTATG
CGTTTTACCAGTCCGGAGGGAGGTCGTAACGCGTCGGCTGTCTCTCTGGC
TAACTTCAGCTATCTTCTACGagtactcctcctccacacgtTTGCTGTTG
TATTACTCAGCTCGTTATCAGCTTGGGCATtttgtccttctctccccgcg
TTGACCCCACTGCTCGCACAAAAAACGTTCGCCATCCCTAGAATTAGCAC
CCCCTGCTCTCGTTTTACAAGTGCTTCTACAGCGTTGAAAATGGGTCTCC
TTTACGAAGCTAAGGCCGGAACGCCACTCTTAGAAGCCATGTCTCAAGCT
ATTGGACAAGCACTCCACAACGATGCAAAGGCCACCGTCCTGGAACCcac
cggaggcggaggctttgccgggggggggggggctaaCACAGGCGTTGCCG
AAGACAGAAAAGTAGGCGAGAAGTACTTCTACAAATCGACGGGGTCATGG
GGACTGGACATGCTTTTGGCAGAGTATAAGGGGACCAAGGCCATGTATGA
CACGCATACGATTCGGGTTCCCACCCCTGTGGCTGTCGGAACCTCGGACG
CTCAGGCATTTGTCGTTTTCGAATACTTGGCCATGGGCGGAACAAGGGGA
GACGCTGCGGGACGCATGGGCCGAGAACTGGCGCAGATGCACCGACACAC
AAGCAAGAATGGTCAATTCGGTTGGGATATCGATAATACGATTGGGGCAA
CCCCGCAACCGAATGGGTGGCAGGCGTCATGGGTTGAGTTCTGGGACGAG
AAGAGGCTGGGGCACATGTTGAAGTTGTGTCGCCGAGAAGGACACGACTT
TGGTCAAGTGGAGCGAGAGCTCCGCGCCAAGGTGAAGCAGATTTTGTCTG
AGGACGGGTACAGTCCAGCGCCTTCCTTGCTGCATGGGGACCTCTGGACT
GGAAACGTGGCTGCGACAGGAGAGGGCGTCCCGTGCATTTTCGACCCTGC
GGTCTACTACGGCGACAGGGAGGCAGACCTGGCCATGACAGCCTTGTTCG
GCTCCCTGGCCCCGGCGTTTTACACAGCCTACATGGAGGAATGGCCCCTG
GAGCCGGGATatgagaagaggaaggtggtcTATAATTTGTACCACATCCT
GAATCACATTGTCTTGTTCGGGGGGGGGTACCGGTCGCAGGCCCAGAGGA
TGATAGATCAAATTCTTAAAATGTAA

Synonyms

Publications