rna834, rna834 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna834
Unique Name	rna834
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1831
Alignment location	CM002456.1:527407..530787 +

Link to JBrowse

Properties


Property Name	Value
Product	lysophospholipase
Orig transcript id	gnl\|cribi\|Naga_100017g25.296.mrna
Orig protein id	gnl\|cribi\|Naga_100017g25.296
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:527407..530787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g25	gene798	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna834	rna834-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29798.1	cds834	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:527407..530787+
coding sequence from alignment at CM002456.1:527407..530787+

mRNA sequence

>rna834 ID=rna834|Name=rna834|organism=Nannochloropsis gaditana|type=mRNA|length=1831bp
ACCACAGCCTTCTTTGCTTCCGTGTTCCAGAAGGCCCGCCGCCTGGGCCG
GAAAAGCAGGAATATGCCCGACTGTTGTGGACACTTGGGCGTCTTAAGGA
CGCGATTGGTGCCTTTGTCGCGAGTTATGGCCGCACTTTTCTTCTTCACG
TCGGTCCTTTTTTTTTTTTGCCTCTTACCCACTTCCACCCAGTTCGTCAC
TTTTTGCTCGTCGTCCACAAACCACAAGTCAAATAATGCCTGTTCCTGCG
GCCGAGGAAAAGAAAAGGTGAGAAATACACTACGAAGCAGCTTACGTCAG
ATTGAGCACCCTTTTCCCCCTTTTTTGTGCGCCTGACGGATTCCCCGAAT
GAGAAGAGTCAGAAGTCTTACCTCCTTTCTCAGAACCATTCAGCTTTTGC
CCATAGCAATGTTGTAACCATCCGTATCTCACCAAGCATGCAACGATTGT
CTGACGAAAATCATTTATCACCCCTCTATCTTCTCCCCAGCTTGGGCAAT
CAAGCTTTTAAAGCTGGCAATTACGCGAAAGCCATCGAACATTACTCGGA
GGCCTTGAAACTCGACGCGACCGCACACACGTACTGGTCGAATCGAAGTG
CTTCCTACGCGGGCCTTGGAGACTGGGAGAACGCTGCAAACGATGCCGCA
GAGTGTGTGAAAGCCAATAAAAAATTTGTCAAGGGCTATTTCCGCTTGGC
TTTGGCGCAGAAAAATCTGCAACGGTACGACCAAGCATTGGACACGATCA
TGAAGGGCTTGGGCATTGATTTTGGAAACAGCGACTTGAAAAGCATGAAG
AAAGAGATAGAGGATGCGGTGCGACTACAGAAAGTCGCCTCGTATGTGGA
GACGGCCAAGCAGCAGTTCGCAAGCAGAGACTACGGTGCCTGCCTGAGCA
CCATCGAAAGCGGGCTGCGCATCGACGCCGGGAACGCTGCTTTGGTGGCT
TTGAAGGGAAAGGTTCAGCCCCTGTGGGAACAGAAGGAGAGGGCGCGAAA
GGCGGGTTTGAGTCCCGTCGAGAAAATGAAAGAAGAGGGAGATGCCCTTT
ACAAGGACGCCAACTTCGAGGCGGCCATCGCGCAGTATAGCAAGACCCTG
GACAAGATGGACGACCAGACCTCCGATTTCGCCATGAAAGTCCTGTCGAA
TCGGGCAGCCTGCCACAAGCAGCTCTCCAACTTTGACGGAGTCATATCGG
ACTGCACGTCCGTGCTGGAGGTGCGCCCGGATGACGTGAAGTCTCTCTTG
CGGCGGGCACAGGCCTTCGAGGCAGTGGAACGGTACAAGATGGCGCTGCA
GGACGTGCGAACGCTTTTGGCACTGCCGGCCGATGTGGTGGGCCCTTCGA
ACACTTCGATCGCTAACGGGTTGCAGCATCGACTGAACCGGGTAATTCAA
AAGCTGCGTGACGGTTGAAACATGCGTCTGGCGCCCGGGAATCCTTCCCG
AATCTCTCCCCCCAACAATAGCCTCCTCTTTATTTTAATGTGCTCTCTAT
CTCGGAGAACCTCCATCGTACGCCTTATGCCATAATTTTGAAGCAACGTT
TCGCGTTTCGTACCGAAAAAAAATGCCCAACTTACCGGTGAAGAGATTGG
TAATAATCGCGAAGTCGGAAAAGAAGAAATTCACAGAATCTGGCAAGACG
ACGAAGTTTCCTTGTCTATCGCGAAGGGATTTGCGGGAACGTAGTCGATT
CGTCTTACTCGTGATCGTGACGCTGGGTGGGTCTTGTTGGTCTTCGTCGT
GTGAGCAGGAGCGACATGAAAACTGGGGTGGGCCATTAAATTCACTTGCA
GCGCATCAAAAATGAGCTCACACATGAATCT

protein sequence of rna834

>rna834-protein ID=rna834-protein|Name=rna834|organism=Nannochloropsis gaditana|type=polypeptide|length=1046bp
MARYCLALAFLLLGVLGRSPCSSATSVACPGSPFTFHFRIQFDKTLSRSS
SLQAADAVLDFFLDGQLPADLFVTKTTTLQDVCESSIETLSVSFKSARNA
VLQYMRSVKRASTHTSRKGRRRMLGGGIRRMFAVVSMRGTAGMRAIKTHQ
VSGRLQTLLAQNGTSVSVISSVQKGPARLPNLKAGAKAVSVSQVNLPAPT
HTFQAYAASPTFKFFIPIILADSDFTGDLIPDVVASEDNAVLQPTQYRVT
AVYRSSRKEGDWTQLTGREKRMFAFKTLRRDKQVRLRLNMKVSPFYWRLR
GQKDRSKSPKTLQAMREFLSHQGLKLSAGSDYSSTGGERGPRFLKWAQGN
VNQSAALLDDETAFHTDNYAAADYAQDYAIIFRSRSSSAPLRMDVTVIPL
VTRNRQPSGSLSPAKSRVCLPGDAAQGLSNVGSGIPERLSEQSACPMFRE
RTTSPSNVLDDGSFEGLHPEESEWVKQRSLKTGPKLAAFIDEHLFPMNYS
TPPNLKLAIAVSGGGKRSLYNAAGVTSGLAQAGVLDLATWMAGSSGGSWL
VGGVYGASLEEEALVDPGSYIEERLTDVSKSIFDGTFCANDVLTNFGVNG
VASLPVAPFASQPSAAATSASILCQSELKFQSPGIKPTQLGSSALAEYWG
RALGYQLLGTSSLDGGVGVTMSGLLEHGLLAEHQAPLPLIILQKGQGAKP
FLWEVSPFDVGVHKGDVHVSYPTALLGTDLSDASKRCTTKLDQLSWLMGV
SGWIFPLALEYAGGTLQSLVCGEAGSACQPVSISNPFFGHTGPSQAAVEG
GSPGLFSSIEAPMWDGSATFNNPAWPFVTPTRMADVMIVIDSGGAEGAEE
TDPPLSRAPLANCASDAATRCTSNTFYELSGPLNGRCCSACSPLLDFSCW
PTPNPSMNDLFRLSAYSDEHTLPADIPQPGFEDPKHATQVSFFGCRQPNV
TAIVYIPNRVVSSGKSGFTGLRGALEFNELFGIPADPLTAPEIRDILRNG
EDQVGQMDFKKCLACLFAASLPEQDRENFWTVTRECTACLETYCQA

mRNA from alignment at CM002456.1:527407..530787+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna834 ID=rna834|Name=rna834|organism=Nannochloropsis gaditana|type=mRNA|length=3381bp|location=Sequence derived from alignment at CM002456.1:527407..530787+ (Nannochloropsis gaditana)
GCATGTGGTAATCGGGAGAAAGGCTCTTTGGGGGGAATGGACGGACTGAA
TGACTCACGCGCTTTGAATTTTGGGGCATTATCAATAGGGATTTGAAAAG
AGTATCGCAGCCTGGTGTTTCCGGCGTCATGGCGCGCTATTGTcttgccc
tcgccttcctcctccttggagTACTTGGACGTTCTCCATGTTCCAGTGCG
ACGTCTGTGGCATGTCCTGGGTCTCCCTTCACATTCCACTTTCGCATCCA
GTTTGACAAGACATTATCGCGCAGCAGTTCTTTACAGGCGGCCGATGCCG
TTCTTGACTTTTTTCTGGATGGGCAACTCCCCGCCGATCTTTTTGTCACT
AAAACTACAACTTTGCAGGATGTGTGCGAGAGCTCCATTGAGACCTTGTC
CGTCAGTTTTAAGAGTGCCCGCAATGCGGTCTTGCAGTATATGCGTAGTG
TTAAGAGAGCAAGCACTCATACatcaaggaaaggaaggaggagaatgtTA
GGGGGGGGAATTCGGCGGATGTTTGCCGTCGTGTCCATGAGAGGAACTGC
TGGAATGAGAGCCATCAAGACTCATCAAGTATCTGGCAGGTTACAAACGC
TGCTTGCCCAAAACGGAACTTCAGTCAGTGTTATATCCAGTGTTCAAAAA
GGGCCTGCCCGGCTACCGAATCtcaaggcgggggcgaaaGCTGTCAGTGT
CTCGCAAGTCAACCTCCCCGCGCCCACGCACACCTTTCAAGCCTACGCCG
CCTCTCCGACATTCAAATTCTTCATTCCCATCATTTTGGCTGATAGCGAC
TTTACCGGAGATTTGATCCCGGATGTGGTGGCATCAGAGGATAATGCAGT
CCTTCAGCCAACGCAGTACCGTGTGACAGCAGTGTACAGAAGTTCTCGGA
AAGAGGGCGATTGGACTCAGCTGACGGGGCGCGAAAAGCGTATGTTTGCC
TTCAAGACCTTGCGAAGGGATAAACAGGTCCGTCTGAGGCTTAACATGAA
GGTATCTCCCTTCTATTGGCGCCTGCGAGGTCAGAAGGACAGAAGTAAGT
CGCCAAAGACACTCCAAGCCATGCGGGAATTTCTGAGCCATCAGGGCCTC
AAGTTGAGTGCAGGCAGCGACTACAGTAGCACCGGCGGTGAGAGAGGCCC
AAGGTTTCTAAAATGGGCCCAAGGGAATGTAAATCAGAGTGCGGCTCTTT
TGGATGATGAGACAGCCTTCCACACGGACAATTACGCTGCAGCTGATTAC
GCTCAGGATTACGCCATCATCTTTCggtctcgctcctcctcagcgCCGCT
GCGAATGGATGTCACTGTTATACCTCTTGTCACGCGCAACAGACAACCAT
CAGGCAGTCTAAGTCCAGCAAAGAGTAGGGTCTGCCTTCCTGGCGACGCC
GCGCAAGGGCTCTCGAATGTGGGATCTGGAATTCCTGAGAGGCTTTCTGA
ACAGAGTGCCTGCCCGATGTTCCGCGAGCGAACGACCTCACCATCTAATG
TTCTCGACGATGGCTCATTCGAGGGTCTTCATCCCGAAGAGAGCGAATGG
GTAAAACAACGCAGTCTAAAAACAGGGCCAAAACTTGCTGCATTTATAGA
CGAACATCTATTTCCGATGAATTATTCGACACCTCCCAATCTCAAATTGG
CCATCGCGGTTTCaggcggagggaagcgcTCGTTATATAATGCTGCTGGA
GTCACTTCCGGTCTCGCTCAAGCGGGTGTGTTGGATTTAGCAACGTGGAT
GGCAGGGTCTTCGGGAGGAAGTTGGCTTGTGGGCGGTGTGTATGGGGCga
gtctggaggaggaggctttggtgGACCCCGGATCCTATATTGAAGAGCGC
CTGACAGATGTAAGCAAAAGCATTTTTGACGGCACATTTTGCGCGAACGA
TGTTTTGACCAATTTCGGAGTCAACGGGGTCGCTTCCTTGCCGGTCGCAC
CGTTCGCCTCCCAGCCCTCAGCGGCTGCGACCTCGGCCAGCATTCTGTGC
CAGAGCGAACTCAAATTTCAAAGCCCAGGAATCAAACCCACGCAGTTGGG
GAGTTCAGCATTGGCCGAGTATTGGGGCCGGGCCCTGGGTTACCAGTTGC
TGGGCACCTCATCCCTAGACGGGGGCGTCGGGGTTACCATGTCGGGTCTG
CTCGAGCACGGTCTGCTTGCTGAGCACCAAGCCCCTTTACCCTTGATCAT
TTTGCAAAAAGGCCAGGGAGCTAAACCTTTTCTATGGGAGGTTTCGCCTT
TCGACGTGGGTGTGCACAAGGGTGACGTGCACGTATCTTATCCTACTGCC
CTGTTGGGGACAGATTTATCGGATGCGAGCAAACGCTGCACCACCAAATT
GGATCAATTATCCTGGCTCATGGGCGTGTCTGGATGGATTTTCCCCTTAG
CCCTAGAGTACGCAGGAGGCACATTACAGTCGCTGGTTTgcggagaggcg
gggagcgcATGCCAACCCGTGTCGATAAGTAATCCTTTTTTCGGACACAC
GGGACCGAGTCAGGCGGCTGTCGAAGGTGGTTCCCCGGGCTTGTTCAGCA
GCATTGAAGCGCCGATGTGGGATGGCTCCGCCACCTTCAACAATCCTGCG
TGGCCTTTTGTCACGCCTACACGGATGGCAGACGTGATGATCGTCATTGA
TTCaggcggggcagagggagcagaggagaCAGACCCTCCTCTGTCGAGAG
CGCCCTTAGCCAACTGTGCATCTGACGCAGCCACGAGATGCACATCTAAC
ACATTCTACGAGCTCAGTGGCCCTTTGAACGGGAGGTGTTGCAGTGCCTG
CTCGCCCCTCTTGGACTTCTCGTGCTGGCCGACCCCGAACCCCAGCATGA
ATGACTTGTTCCGCCTTTCTGCCTACAGCGATGAACACACTTTGCCAGCA
GATATACCCCAACCCGGCTTTGAAGATCCCAAGCATGCAACGCAAGTGAG
TTTTTTTGGATGCCGCCAGCCCAATGTCACGGCGATAGTGTACATTCCCA
ATCGGGTCGTTTCGAGCGGAAAAAGTGGATTTACAGGGCTGCGCGGCGCC
CTGGAATTCAATGAGCTATTTGGGATCCCCGCAGATCCACTGACAGCACC
AGAGATACGTGATATACTTCGAAATGGAGAAGATCAGGTGGGGCAGATGG
ATTTCAAGAAATGCCTTGCCTGCCTGTTTGCAGCCTCCCTTCCGGAACAG
GACAGAGAAAACTTTTGGACGGTCACACGGGAATGTACTGCATGCCTGGA
GACCTATTGTCAAGCTTGACTGTAACTGTAAATACACGGACTGCGAAACA
AATCTCAGTCAAACTTTCTTTTGAAGCTCGTAAGTGTCCGAAAGTGCAAG
TTTTTTCCTTATAAAGTCTTAAACATTTCGT

Coding sequence (CDS) from alignment at CM002456.1:527407..530787+

>rna834 ID=rna834|Name=rna834|organism=Nannochloropsis gaditana|type=CDS|length=3141bp|location=Sequence derived from alignment at CM002456.1:527407..530787+ (Nannochloropsis gaditana)
ATGGCGCGCTATTGTcttgccctcgccttcctcctccttggagTACTTGG
ACGTTCTCCATGTTCCAGTGCGACGTCTGTGGCATGTCCTGGGTCTCCCT
TCACATTCCACTTTCGCATCCAGTTTGACAAGACATTATCGCGCAGCAGT
TCTTTACAGGCGGCCGATGCCGTTCTTGACTTTTTTCTGGATGGGCAACT
CCCCGCCGATCTTTTTGTCACTAAAACTACAACTTTGCAGGATGTGTGCG
AGAGCTCCATTGAGACCTTGTCCGTCAGTTTTAAGAGTGCCCGCAATGCG
GTCTTGCAGTATATGCGTAGTGTTAAGAGAGCAAGCACTCATACatcaag
gaaaggaaggaggagaatgtTAGGGGGGGGAATTCGGCGGATGTTTGCCG
TCGTGTCCATGAGAGGAACTGCTGGAATGAGAGCCATCAAGACTCATCAA
GTATCTGGCAGGTTACAAACGCTGCTTGCCCAAAACGGAACTTCAGTCAG
TGTTATATCCAGTGTTCAAAAAGGGCCTGCCCGGCTACCGAATCtcaagg
cgggggcgaaaGCTGTCAGTGTCTCGCAAGTCAACCTCCCCGCGCCCACG
CACACCTTTCAAGCCTACGCCGCCTCTCCGACATTCAAATTCTTCATTCC
CATCATTTTGGCTGATAGCGACTTTACCGGAGATTTGATCCCGGATGTGG
TGGCATCAGAGGATAATGCAGTCCTTCAGCCAACGCAGTACCGTGTGACA
GCAGTGTACAGAAGTTCTCGGAAAGAGGGCGATTGGACTCAGCTGACGGG
GCGCGAAAAGCGTATGTTTGCCTTCAAGACCTTGCGAAGGGATAAACAGG
TCCGTCTGAGGCTTAACATGAAGGTATCTCCCTTCTATTGGCGCCTGCGA
GGTCAGAAGGACAGAAGTAAGTCGCCAAAGACACTCCAAGCCATGCGGGA
ATTTCTGAGCCATCAGGGCCTCAAGTTGAGTGCAGGCAGCGACTACAGTA
GCACCGGCGGTGAGAGAGGCCCAAGGTTTCTAAAATGGGCCCAAGGGAAT
GTAAATCAGAGTGCGGCTCTTTTGGATGATGAGACAGCCTTCCACACGGA
CAATTACGCTGCAGCTGATTACGCTCAGGATTACGCCATCATCTTTCggt
ctcgctcctcctcagcgCCGCTGCGAATGGATGTCACTGTTATACCTCTT
GTCACGCGCAACAGACAACCATCAGGCAGTCTAAGTCCAGCAAAGAGTAG
GGTCTGCCTTCCTGGCGACGCCGCGCAAGGGCTCTCGAATGTGGGATCTG
GAATTCCTGAGAGGCTTTCTGAACAGAGTGCCTGCCCGATGTTCCGCGAG
CGAACGACCTCACCATCTAATGTTCTCGACGATGGCTCATTCGAGGGTCT
TCATCCCGAAGAGAGCGAATGGGTAAAACAACGCAGTCTAAAAACAGGGC
CAAAACTTGCTGCATTTATAGACGAACATCTATTTCCGATGAATTATTCG
ACACCTCCCAATCTCAAATTGGCCATCGCGGTTTCaggcggagggaagcg
cTCGTTATATAATGCTGCTGGAGTCACTTCCGGTCTCGCTCAAGCGGGTG
TGTTGGATTTAGCAACGTGGATGGCAGGGTCTTCGGGAGGAAGTTGGCTT
GTGGGCGGTGTGTATGGGGCgagtctggaggaggaggctttggtgGACCC
CGGATCCTATATTGAAGAGCGCCTGACAGATGTAAGCAAAAGCATTTTTG
ACGGCACATTTTGCGCGAACGATGTTTTGACCAATTTCGGAGTCAACGGG
GTCGCTTCCTTGCCGGTCGCACCGTTCGCCTCCCAGCCCTCAGCGGCTGC
GACCTCGGCCAGCATTCTGTGCCAGAGCGAACTCAAATTTCAAAGCCCAG
GAATCAAACCCACGCAGTTGGGGAGTTCAGCATTGGCCGAGTATTGGGGC
CGGGCCCTGGGTTACCAGTTGCTGGGCACCTCATCCCTAGACGGGGGCGT
CGGGGTTACCATGTCGGGTCTGCTCGAGCACGGTCTGCTTGCTGAGCACC
AAGCCCCTTTACCCTTGATCATTTTGCAAAAAGGCCAGGGAGCTAAACCT
TTTCTATGGGAGGTTTCGCCTTTCGACGTGGGTGTGCACAAGGGTGACGT
GCACGTATCTTATCCTACTGCCCTGTTGGGGACAGATTTATCGGATGCGA
GCAAACGCTGCACCACCAAATTGGATCAATTATCCTGGCTCATGGGCGTG
TCTGGATGGATTTTCCCCTTAGCCCTAGAGTACGCAGGAGGCACATTACA
GTCGCTGGTTTgcggagaggcggggagcgcATGCCAACCCGTGTCGATAA
GTAATCCTTTTTTCGGACACACGGGACCGAGTCAGGCGGCTGTCGAAGGT
GGTTCCCCGGGCTTGTTCAGCAGCATTGAAGCGCCGATGTGGGATGGCTC
CGCCACCTTCAACAATCCTGCGTGGCCTTTTGTCACGCCTACACGGATGG
CAGACGTGATGATCGTCATTGATTCaggcggggcagagggagcagaggag
aCAGACCCTCCTCTGTCGAGAGCGCCCTTAGCCAACTGTGCATCTGACGC
AGCCACGAGATGCACATCTAACACATTCTACGAGCTCAGTGGCCCTTTGA
ACGGGAGGTGTTGCAGTGCCTGCTCGCCCCTCTTGGACTTCTCGTGCTGG
CCGACCCCGAACCCCAGCATGAATGACTTGTTCCGCCTTTCTGCCTACAG
CGATGAACACACTTTGCCAGCAGATATACCCCAACCCGGCTTTGAAGATC
CCAAGCATGCAACGCAAGTGAGTTTTTTTGGATGCCGCCAGCCCAATGTC
ACGGCGATAGTGTACATTCCCAATCGGGTCGTTTCGAGCGGAAAAAGTGG
ATTTACAGGGCTGCGCGGCGCCCTGGAATTCAATGAGCTATTTGGGATCC
CCGCAGATCCACTGACAGCACCAGAGATACGTGATATACTTCGAAATGGA
GAAGATCAGGTGGGGCAGATGGATTTCAAGAAATGCCTTGCCTGCCTGTT
TGCAGCCTCCCTTCCGGAACAGGACAGAGAAAACTTTTGGACGGTCACAC
GGGAATGTACTGCATGCCTGGAGACCTATTGTCAAGCTTGA

Synonyms

Publications