rna8339, rna8339 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8339
Unique Name	rna8339
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	747
Alignment location	KK037248.1:419128..421343 -

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Properties


Property Name	Value
Product	fad dependent oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100066g28.10323.mrna
Orig protein id	gnl\|cribi\|Naga_100066g28.10323
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:419128..421343 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g28	gene8078	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8339	rna8339-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22366.1	cds8312	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:419128..421343-
coding sequence from alignment at KK037248.1:419128..421343-

mRNA sequence

>rna8339 ID=rna8339|Name=rna8339|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGCTGAGCAGGGATGTATGTCCGATGCTGAAACATGTGTGTCCATCCAC
ATTCTCCTCAACGCAGGCTTCGCATATTCTCGTCACGCAACGACAGGGGC
GTCATATGAGTCTCATGCTATCCTTCCGGTGCAACATACGCACGTCGCTG
CTTTTCAATCGACCACACCTTTCGACACAGCTTGCGACGGCTCCGTCACT
TGTGCGCCATTCCACCGTGTGGCGCGTAGTGCAGAATGCGATTCAAGAAC
GGCGGGCCTCGAAGGAAGAGGAGCAATTTCAGGCAGAACTGGCAAGACTA
GCGAGCATGACGCGCTACGATTTGCGTAATTTCAAAGAGGCAGTGGATAA
ACCGGGGAATTCGTGGTTTTCCTGGGTCAACAAAGTACCGGGAGTTCGGA
GCATGCCAGAAGTGCAGGTGGGGGAGCGGTACAGGAAGATCCTAGGCGCG
TTCACGGAGGAGGAGTTGGCCCACCCTGAGAAGATCAAGTCGAGGGAGAA
GCAACGTGTGGCCACACAGAGTGGTGAGTCGATCCAAGAAATCAATTTGC
TCCTTAGCTTGTACGAAAACTCTCAGGCCTTGCACAAGTGGGTACGTCGG
CGGGTGGCGGACAAGAAGGAAATGCCCAAGACGCAGAGTGAGTGCCAAGT
ACTGATGATGGGGGATCCGGCGGGCGTATCTGTGGGAGCCATGCAGCAGA
AACAACAGAAAAGGGCGTTGAAGAAAGGAAACCGGTTGCCATTTTAA

protein sequence of rna8339

>rna8339-protein ID=rna8339-protein|Name=rna8339|organism=Nannochloropsis gaditana|type=polypeptide|length=602bp
MISSMVFLLVVLAMDPACGFLSPMARPTTPLSLHVSTAPADDKSVSITTK
EPFGFRTKRILDKIGADADASGGAGSSISFTTLEAIDRAWEAVKTGRASG
EAPTFVRETDVPLSTSPKFDVIVAGGTLGIFMATALQRKGFRVCVVERGP
LRGRTQEWNISRKEMMELVEEGVLSKEDVEDAIGIDFNPIRVGFVGEKNE
PYTLWTQDVLHLGVSPSVLLARAQSRFLAAGGVVHENTPIQGIRIAPNGA
AVEVKSTEMMGGEELTGRLVIDCMGNQSPISRQARAGQQPDGICIVVGTC
ASGFDPARNTYADLLYSNTPTMDKGVSQVHWFWEAFPASSGPGDRTTYLF
MYCDAKPERPSILECFEDYWDLMPQYQNLSSLDALTFKRAVCNFFPTYKD
SPLRTDFPRLCAIGDASGIQSPLSFGGFGSLSRHLGRLTTAFSDALATDS
LSKEELGLINAYQPSLSVTWMFQRTMSVPVGAKPRPDFINRSLINNFKSM
EKLGDPVLKPFLQDVVQAGPLFSAMAGIARQDFFNTPTVLWHVGADAFFG
WFRHFFMLCVYTLLYRATKQTKGTEALPPKIRYRWDRRVENWEFGSGLDY
RL

mRNA from alignment at KK037248.1:419128..421343-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8339 ID=rna8339|Name=rna8339|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp|location=Sequence derived from alignment at KK037248.1:419128..421343- (Nannochloropsis gaditana)
CGGGAGGGCTTCCTCTGCCAAAGCGATAATCCATGCATGAGTAATGGGAT
TTGGTGTACAATCAAACATTTCAATCCTCGGTAACGATATTCTGCCCCTA
TTTTCTCCTTCAGGACGCGATCATTGCGGTATTTGTTTTAGAGCTCTTAG
ACCTCGAATACGCTGCAAATACAGAGTAATTTGTAATCTTTCGCGCAACA
ATTGGGAATCCTGCAAAAAATATGATATCATCTATGGTTTTCCTGCTCGT
GGTATTGGCCATGGATCCCGCATGTGGCTTCCTCTCCCCCATGGCTCGAC
CAACGACACCATTGAGTTTGCACGTGAGCACTGCCCCTGCAGACGACAAA
TCCGTCTCCATTACCACAAAAGAACCCTTTGGATTCAGGACGAAGAGAAT
TCTGGATAAGATCGGCGCGGATGCGGATGCTTCAGGGGGTGCGGGATCGT
CAATTTCCTTCACGACCCTGGAGGCGATAGACCGCGCTTGGGAGGCCGTT
AAAACAGGTCGGGCTTCGGGGGAGGCTCCCACTTTCGTACGGGAGACCGA
TGTTCCCTTATCTACATCCCCCAAATTCGATGTAATCGTTGCGGGAGGTA
CGTTGGGGATTTTTATGGCAACAGCTTTGCAAAGAAAAGGTTTTCGTGTT
TGCGTTGTAGAGCGCGGACCCTTGCGGGGTCGGACGCAGGAATGGAATAT
TTCTCGAAAAGAAATGATGGAATTGGTAGAGGAAGGAGTGCTTAGCAAGG
AAGATGTAGAAGACGCAATCGGTATCGACTTCAACCCTATCCGTGTGGGT
TTCGTGGGCGAAAAAAATGAGCCGTACACTCTATGGACGCAGGACGTGCT
GCACCTCGGCGTCTCTCCCTCTGTGCTGCTGGCTCGGGCTCAATCTCGGT
TTCTGGCCGCAGGAGGCGTCGTGCACGAAAACACCCCAATCCAAGGCATC
CGGATTGCGCCTAATGGGGCGGCGGTGGAGGTGAAGAGCACAGAAATGAT
GGGCGGTGAAGAGCTCACGGGGCGCCTTGTGATAGACTGCATGGGTAATC
AGAGCCCTATCTCGCGTCAGGCACGGGCAGGGCAACAACCCGACGGCATT
TGTATCGTGGTGGGCACATGTGCATCTGGATTTGACCCGGCCCGGAACAC
CTACGCCGACTTGCTGTACAGCAACACTCCTACCATGGACAAGGGGGTCT
CCCAAGTGCACTGGTTCTGGGAGGCGTTCCCTGCGTCCTCGGGACCCGGC
GACAGGACTACTTACTTATTCATGTACTGCGACGCCAAGCCGGAGCGACC
GTCGATCCTGGAATGCTTCGAGGTTGGAAAGAGAGGGACGTGGGGGGGGG
TGGGGGGGGGGCAGTCCAGTTAGCCACCCGTCCTGACAACCACTCCATTC
TTCTTTCCCTTCTTCTCATTTTCTTCGTCAGGATTATTGGGACTTAATGC
CTCAGTACCAGAACCTTTCGAGCCTGGACGCGCTCACCTTCAAACGCGCC
GTCTGCAATTTCTTCCCCACCTACAAGGACAGCCCCCTGCGGACCGACTT
CCCCCGACTCTGCGCCATCGGTGACGCCTCAGGCATCCAATCCCCCTTGT
CCTTTGGCGGGTTTGGCTCCTTAAGTCGCCACCTTGGCCGCCTGACCACC
GCTTTTTCCGACGCTTTGGCCACGGACTCTCTCTCGAAAGAGGAGCTCGG
GCTCATCAATGCCTATCAACCCTCCCTGTCCGTCACCTGGATGTTCCAAC
GGACCATGAGTGTGCCTGTCGGAGCCAAGCCCCGGCCTGACTTCATCAAC
CGCTCGCTGATCAACAACTTCAAATCCATGGAGAAGCTCGGAGACCCGGT
CCTGAAGCCCTTCCTGCAGGACGTGGTGCAAGCTGGCCCGCTCTTCTCAG
CCATGGCTGGCATCGCCCGCCAGGACTTCTTCAACACCCCCACCGTCCTC
TGGCACGTGGGCGCGGACGCCTTCTTTGGATGGTTCCGTCATTTTTTCAT
GCTCTGCGTGTATACTCTCCTATACCGTGCCACGAAACAGACCAAAGGCA
CGGAGGCCCTGCCCCCGAAGATAAGGTACCGATGGGACAGACGGGTGGAG
AACTGGGAGTTCGGCTCCGGGTTGGATTATCGGTTGTAAGAAAGGAGGAC
TCTTGGCGAGGTGTATTGCTGTAAGATACAAATGTACGAACCGAGAATCA
AGGGGCAAGTCCCCGC

Coding sequence (CDS) from alignment at KK037248.1:419128..421343-

>rna8339 ID=rna8339|Name=rna8339|organism=Nannochloropsis gaditana|type=CDS|length=3618bp|location=Sequence derived from alignment at KK037248.1:419128..421343- (Nannochloropsis gaditana)
GATTATTGGGACTTAATGCCTCAGTACCAGAACCTTTCGAGCCTGGACGC
GCTCACCTTCAAACGCGCCGTCTGCAATTTCTTCCCCACCTACAAGGACA
GCCCCCTGCGGACCGACTTCCCCCGACTCTGCGCCATCGGTGACGCCTCA
GGCATCCAATCCCCCTTGTCCTTTGGCGGGTTTGGCTCCTTAAGTCGCCA
CCTTGGCCGCCTGACCACCGCTTTTTCCGACGCTTTGGCCACGGACTCTC
TCTCGAAAGAGGAGCTCGGGCTCATCAATGCCTATCAACCCTCCCTGTCC
GTCACCTGGATGTTCCAACGGACCATGAGTGTGCCTGTCGGAGCCAAGCC
CCGGCCTGACTTCATCAACCGCTCGCTGATCAACAACTTCAAATCCATGG
AGAAGCTCGGAGACCCGGTCCTGAAGCCCTTCCTGCAGGACGTGGTGCAA
GCTGGCCCGCTCTTCTCAGCCATGGCTGGCATCGCCCGCCAGGACTTCTT
CAACACCCCCACCGTCCTCTGGCACGTGGGCGCGGACGCCTTCTTTGGAT
GGTTCCGTCATTTTTTCATGCTCTGCGTGTATACTCTCCTATACCGTGCC
ACGAAACAGACCAAAGGCACGGAGGCCCTGCCCCCGAAGATAAGGTACCG
ATGGGACAGACGGGTGGAGAACTGGGAGTTCGGCTCCGGGTTGGATTATC
GGTTGTAAATGATATCATCTATGGTTTTCCTGCTCGTGGTATTGGCCATG
GATCCCGCATGTGGCTTCCTCTCCCCCATGGCTCGACCAACGACACCATT
GAGTTTGCACGTGAGCACTGCCCCTGCAGACGACAAATCCGTCTCCATTA
CCACAAAAGAACCCTTTGGATTCAGGACGAAGAGAATTCTGGATAAGATC
GGCGCGGATGCGGATGCTTCAGGGGGTGCGGGATCGTCAATTTCCTTCAC
GACCCTGGAGGCGATAGACCGCGCTTGGGAGGCCGTTAAAACAGGTCGGG
CTTCGGGGGAGGCTCCCACTTTCGTACGGGAGACCGATGTTCCCTTATCT
ACATCCCCCAAATTCGATGTAATCGTTGCGGGAGGTACGTTGGGGATTTT
TATGGCAACAGCTTTGCAAAGAAAAGGTTTTCGTGTTTGCGTTGTAGAGC
GCGGACCCTTGCGGGGTCGGACGCAGGAATGGAATATTTCTCGAAAAGAA
ATGATGGAATTGGTAGAGGAAGGAGTGCTTAGCAAGGAAGATGTAGAAGA
CGCAATCGGTATCGACTTCAACCCTATCCGTGTGGGTTTCGTGGGCGAAA
AAAATGAGCCGTACACTCTATGGACGCAGGACGTGCTGCACCTCGGCGTC
TCTCCCTCTGTGCTGCTGGCTCGGGCTCAATCTCGGTTTCTGGCCGCAGG
AGGCGTCGTGCACGAAAACACCCCAATCCAAGGCATCCGGATTGCGCCTA
ATGGGGCGGCGGTGGAGGTGAAGAGCACAGAAATGATGGGCGGTGAAGAG
CTCACGGGGCGCCTTGTGATAGACTGCATGGGTAATCAGAGCCCTATCTC
GCGTCAGGCACGGGCAGGGCAACAACCCGACGGCATTTGTATCGTGGTGG
GCACATGTGCATCTGGATTTGACCCGGCCCGGAACACCTACGCCGACTTG
CTGTACAGCAACACTCCTACCATGGACAAGGGGGTCTCCCAAGTGCACTG
GTTCTGGGAGGCGTTCCCTGCGTCCTCGGGACCCGGCGACAGGACTACTT
ACTTATTCATGTACTGCGACGCCAAGCCGGAGCGACCGTCGATCCTGGAA
TGCTTCGAGGATTATTGGGACTTAATGCCTCAGTACCAGAACCTTTCGAG
CCTGGACGCGCTCACCTTCAAACGCGCCGTCTGCAATTTCTTCCCCACCT
ACAAGGACAGCCCCCTGCGGACCGACTTCCCCCGACTCTGCGCCATCGGT
GACGCCTCAGGCATCCAATCCCCCTTGTCCTTTGGCGGGTTTGGCTCCTT
AAGTCGCCACCTTGGCCGCCTGACCACCGCTTTTTCCGACGCTTTGGCCA
CGGACTCTCTCTCGAAAGAGGAGCTCGGGCTCATCAATGCCTATCAACCC
TCCCTGTCCGTCACCTGGATGTTCCAACGGACCATGAGTGTGCCTGTCGG
AGCCAAGCCCCGGCCTGACTTCATCAACCGCTCGCTGATCAACAACTTCA
AATCCATGGAGAAGCTCGGAGACCCGGTCCTGAAGCCCTTCCTGCAGGAC
GTGGTGCAAGCTGGCCCGCTCTTCTCAGCCATGGCTGGCATCGCCCGCCA
GGACTTCTTCAACACCCCCACCGTCCTCTGGCACGTGGGCGCGGACGCCT
TCTTTGGATGGTTCCGTCATTTTTTCATGCTCTGCGTGTATACTCTCCTA
TACCGTGCCACGAAACAGACCAAAGGCACGGAGGCCCTGCCCCCGAAGAT
AAGGTACCGATGGGACAGACGGGTGGAGAACTGGGAGTTCGGCTCCGGGT
TGGATTATCGGTTGTAAATGATATCATCTATGGTTTTCCTGCTCGTGGTA
TTGGCCATGGATCCCGCATGTGGCTTCCTCTCCCCCATGGCTCGACCAAC
GACACCATTGAGTTTGCACGTGAGCACTGCCCCTGCAGACGACAAATCCG
TCTCCATTACCACAAAAGAACCCTTTGGATTCAGGACGAAGAGAATTCTG
GATAAGATCGGCGCGGATGCGGATGCTTCAGGGGGTGCGGGATCGTCAAT
TTCCTTCACGACCCTGGAGGCGATAGACCGCGCTTGGGAGGCCGTTAAAA
CAGGTCGGGCTTCGGGGGAGGCTCCCACTTTCGTACGGGAGACCGATGTT
CCCTTATCTACATCCCCCAAATTCGATGTAATCGTTGCGGGAGGTACGTT
GGGGATTTTTATGGCAACAGCTTTGCAAAGAAAAGGTTTTCGTGTTTGCG
TTGTAGAGCGCGGACCCTTGCGGGGTCGGACGCAGGAATGGAATATTTCT
CGAAAAGAAATGATGGAATTGGTAGAGGAAGGAGTGCTTAGCAAGGAAGA
TGTAGAAGACGCAATCGGTATCGACTTCAACCCTATCCGTGTGGGTTTCG
TGGGCGAAAAAAATGAGCCGTACACTCTATGGACGCAGGACGTGCTGCAC
CTCGGCGTCTCTCCCTCTGTGCTGCTGGCTCGGGCTCAATCTCGGTTTCT
GGCCGCAGGAGGCGTCGTGCACGAAAACACCCCAATCCAAGGCATCCGGA
TTGCGCCTAATGGGGCGGCGGTGGAGGTGAAGAGCACAGAAATGATGGGC
GGTGAAGAGCTCACGGGGCGCCTTGTGATAGACTGCATGGGTAATCAGAG
CCCTATCTCGCGTCAGGCACGGGCAGGGCAACAACCCGACGGCATTTGTA
TCGTGGTGGGCACATGTGCATCTGGATTTGACCCGGCCCGGAACACCTAC
GCCGACTTGCTGTACAGCAACACTCCTACCATGGACAAGGGGGTCTCCCA
AGTGCACTGGTTCTGGGAGGCGTTCCCTGCGTCCTCGGGACCCGGCGACA
GGACTACTTACTTATTCATGTACTGCGACGCCAAGCCGGAGCGACCGTCG
ATCCTGGAATGCTTCGAG

Synonyms

Publications