|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100066g20.10329.mrna |
| Orig protein id | gnl|cribi|Naga_100066g20.10329 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:400378..401217 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8333 ID=rna8333|Name=rna8333|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp
CGCGACATCCATTGTCCACCTTCCACGTCAATTCGAACCCTAAGTAGCAA
TGTGCGTGGGGTTAGCGCCTATAGCTGAGAGGATCGTTGATTTTTGCTAA
AGAAGAGCAAACAGACGAGGAGCGTATCGCCTCCTCAGGCTGCCCTCCTC
CTGCCCTGTATCTCTGTCGCCAGTCCATTTTACCATCGGTGTACTATCGA
CTTACGCTCCTTGCGTCATAACTTCAACCACTACAATAGTTCGGACACCA
TTATGTCTCATACCAAGGGGCGGTCCCATCACGCGGACGAAGAGGAGAGC
GTCCCTCCGCCCCCCGCCCAGCCTGAAGATGAGAGTGAAGACGACAGCGA
CGACGATTTCGGACCGGCCCCCCTTCCTGCTTCCAATGACTCGTCAGCTG
CAAACGATGTCTCATCTGCACGTTCGAAGAAAAAGAAGAAACGGCGGAAG
CTGGAGCATGAAGAGGCTTTCTTGGCTGCTTTACCCAACGCAGACATGTA
CGAAAAGAGCTACATGCACCGAGACACAGTCACCCAGTGCGCGTTCACCC
CACGAACAGATTTCCTGATCACGGCCTCCGAGGATGGCCACGTCAAGTTT
TGGAAAAAAATGCCTGAAGGGTTGGAATTTGTGAAACATTATCACGCCCA
CCTGGGGCCAATTCGGGGACTGGCAGTCAGTGGAGACGGCCTCCGCTTGG
CCACGACAGGTGCAGACAAGGCGATCAAATTCTATGACGTCCTGACATTC
GATCTAACCTACATGCTGGACGTGGATTTCTCTCCAAGCCACGCGGTCTG
GGTCCACCGCCCCGGAGAGGCGCACGGGCGTTTGGCCGTGGCGGACGCGG
ACACGCCCTGCCTTCGCATCTACCGCTCTGACGGCAGCCAAGCTCCCATC
CATACGTTGCCGACCATGCACGCCGCACCTGTGACGGCCTTGGCCTTTTC
CCCCTCAGATGCGCTGGCCATCTCGGCGGACGTGAAAGGCATGCTCGAAT
ACTGGTCGACCGAATTGGAAGGCGGAGACGGGGACGCGTACACCTTCCCG
CGGAAGAAGGTTTTCTTCCGGAGTAAACTCGACTCGGACCTCTTTGAGAT
GCTCAAGAGGAAGACCTACATCACCGCAATGGACGTGAGCCGGGATGGAA
GCAAGCTGGCAACTGTGGGCAAGGACCGACACATCCGGGTATTTGACTTG
CGACGAGGGAAACTCTTGCGTGTCTACAATGAAGGATTGGAAGTGGCGGA
AGCGGCTATGGCCACAGGGACACTTGGTTTGGATACCATCGACTTCGGGC
GGCGTTCGGCCGTGGAGCACGAGCTGGAGGGCTCGGCCCCGGACGTGATG
GCGCGAAATAATGCCGTCTTCGACGAGACCGGTCACTTCTTGATCTACGC
GACGCTGTTGGGCATCAAAACGGTGAACGTGGAGACGAACCGAGTGGTGA
AGGTGTTGGGGAAGATCGAGAGCGGGGAGCGCTTCCTCCGGGTATGTGTG
TTCCAAGGGGTGCCCAAGGTCGACTCGCAGATGGTCAAGGCGCTGAACAA
GGGCAAGACAGCCAGCAGCGTGGAGGAGATGCGGGCCCAGCTCCGGCCCG
ACCCCACTGTGGTAGCGACGGCCTTTAACAAGCGGAGGTTCTACTTGTTC
ACGCGCCGCATGCCCAGCGACGTGGAGGGGGAGGGGCTGGGGGAGGCGGG
CGGTCGGGACGTGTTGAACGAGAAGCCGACAGCCGAGGAGGCCACGGTGG
CCTCGGCGACGGACAAAGCCCAGCAAGAGCTGGGGAAAGCGGCGATTCTG
AGGACGACGATGGGAGACATCCACCTGAAGCTGTTCAAGGAGGAGTGCCC
GCGGACGATCGAGAACTTCGTGACGCACGCTCGGAACGGGTACTACGACA
ATGTTCTCTTCCATCGCGTCATCAAGGGGTTCATGGTCCAGACGGGCGAT
CCGCAGGGGGACGGGACGGGGGGCGAGAGCATTTGGGGTGGGGAGTTCGA
GGACGAGATACATCGGAATCTGCGGCACGACCGGCCGTTCACCCTCTCCA
TGGCCAATGCGGGGCCCAACACGAACGGGAGCCAGTTTTTCATCACCACG
GTGCCGACGCCTTGGCTGGACGGGAAGCACACGGTCTTCGGGCGCGTCGT
CCAGGGCATGGACGTGGTCAGCCAGATCTCCCAGGTGAAAGTGGACCCAC
AGGACCGGCCCTTCGCGGATGTGAAGATCATCAATGTAGACACCTTGTAG
GGAGGGCTTGGTCGAGCAGGGAGGCGGGCCTCGCCGTGTAAAAATGGAAG
GAGGGAGAAAAAGGCGAAATTTGCTCAAAACACAAGATTGCCAGAAACGC
CCGAGGCAAAGGAAAAAGAAAGCTAGAGGGCTGTCCTACATGTCTTCCTT
CTTGCCTAACGTGGTTACTTGGCTGCACGCCCGGCCCCCCTGCCTATGAA
AACTTTTTTCCTCCGCTTTCAGCAGCCTACTTTATGTACATTCACTAAAT
TCTGGCCCATACGCCGAACCCTGGCAGGTCTTCCTTCCTCCTTCCCACAA
TATTCGTTCAGCCTCCCCGCCATGGTTTCCGTCTTATGAATTTCTTGCTT
CCTCCTTTGCACCACGCACCTTTTTAATTCTATGGCAAGCGCAGTCTGTC
TTCATCTTCAACACATATTGTATAAAACA back to topprotein sequence of rna8333 >rna8333-protein ID=rna8333-protein|Name=rna8333|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MTQEIVFDEQSSQGAKGVYATNTNAAARTLGGDDLHEHDFLLESLDDEDE
EGLDSLRGEAVRKAGMSGGRGRGRGRGRGARDSGRYGRMRNSHAPLQGPT
SSRSPVEDRKKANKTKPKTVVF back to topmRNA from alignment at KK037248.1:400378..401217+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8333 ID=rna8333|Name=rna8333|organism=Nannochloropsis gaditana|type=mRNA|length=840bp|location=Sequence derived from alignment at KK037248.1:400378..401217+ (Nannochloropsis gaditana)
TTTGTCTCCGTCCCTTGTCTGAGcagactccctccctctccactccCTTT
CAGGCGGATGCAACTACGCGACTTGCTTTGTCTGTGGCAAGCGGGGCCAC
CTTTCTTCCCAGTGCGAGAGGAACGAAAAGGGCCTGTATCccaaaggggg
agggtgccATCGgtgcggggagaaggaccaTTTTGCCGCCCGGTGCCCCa
ccagggaaggaggaaaggaaacggggacggaggaggatggtgagagggaa
aggcagggggggcaggaaggggcagacgAAGCTGCAGTCAAAGAGAAGGA
GTACGGTGGCACCGATCCTTCAATTTTTAAGGCACGATATGTGAAAGAGA
AGCGGCCCTGGCAGGAGTCGATGACACAAGAGATCGTCTTTGATGAACAG
AGCTCACAAGGGGCCAAGGGCGTCTATGCAACGAACACAAATGCTGCCGC
TAGGACATTAGGGGGGGACGACCTTCATGAGCACGATTTCCTCTTGGAAT
CGCTcgacgatgaagatgaggaaggactCGACTCTCTGCGGGGCGAAGCT
GTTCGCAAGGCCGGAatgagcggagggagggggagaggacgtggccgagg
aaggggggctcgTGATTCCGGTAGGTATGGGCGTATGCGCAATAGTCACG
CTCCTTTGCAAGGCCCCACGAGTTCTAGGTCACCCGTGGAAGATaggaag
aaagcgaacaAGACCAAACCGAAGACGGTTGTTTTCTAATGCTCTGTGGC
CTCGGAAAATTTCCCTGCATACTAAGCTCGTTTGCATGCACACCCAAACG
ATGAATAAAATTGTTTCACTGAATCAATCAGAGTTATCTG back to topCoding sequence (CDS) from alignment at KK037248.1:400378..401217+ >rna8333 ID=rna8333|Name=rna8333|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at KK037248.1:400378..401217+ (Nannochloropsis gaditana)
ATGACACAAGAGATCGTCTTTGATGAACAGAGCTCACAAGGGGCCAAGGG
CGTCTATGCAACGAACACAAATGCTGCCGCTAGGACATTAGGGGGGGACG
ACCTTCATGAGCACGATTTCCTCTTGGAATCGCTcgacgatgaagatgag
gaaggactCGACTCTCTGCGGGGCGAAGCTGTTCGCAAGGCCGGAatgag
cggagggagggggagaggacgtggccgaggaaggggggctcgTGATTCCG
GTAGGTATGGGCGTATGCGCAATAGTCACGCTCCTTTGCAAGGCCCCACG
AGTTCTAGGTCACCCGTGGAAGATaggaagaaagcgaacaAGACCAAACC
GAAGACGGTTGTTTTCTAA back to top
|