rna8332, rna8332 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8332
Unique Name	rna8332
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2496
Alignment location	KK037248.1:396746..399424 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidylprolyl isomerase domain and wd repeat-containing protein 1
Orig transcript id	gnl\|cribi\|Naga_100066g19.10330.mrna
Orig protein id	gnl\|cribi\|Naga_100066g19.10330
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:396746..399424 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g19	gene8071	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22373.1	cds8305	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8332	rna8332-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:396746..399424-
coding sequence from alignment at KK037248.1:396746..399424-

mRNA sequence

>rna8332 ID=rna8332|Name=rna8332|organism=Nannochloropsis gaditana|type=mRNA|length=2496bp
ATGCGGCGGCAAGCGTTCCACTTGCAGTTATTACTTGTCGTCGTTCTGCT
CCCTTCTCTTTTCTTGCATCGAGCTGCAGCGTTTGTTCCTTTCCCCTCCC
CAAGGCCCACACCGCGCATAAACCCAAGCGCGGGACCCCGACGATTTTCT
TGGAGTGCTAAGCTTTCGAAGACTTCCGATACAATCATGTCAACGATGTC
ATCCACGACCTGTCCCGAAGCTGCCCAGCATCAGCCACATGTGATGGTGA
CTCTCCATCCAAATGGTGTCCTTGAGTTGCAGCTCAACCGTCCCAAAGCC
CTAAATGCACTTTCCTTATCCATGCTGCACGAGATGAAAATATACGTGGA
AGGGGCTTTGGTCGGCAAAAGCTGTGGTGGTGAAGGCGCCGTGAAGGCCT
TGATCTTGACCGCTTCTGAGGATTCCCGAGCATTCTCAGCAGGCGGAGAC
ATAAAAGAAGTCCTGGCGGGGCGGCTTTCTCAGGATGAGGCCATCAAAAA
AGGGTGCGACCCCCTCACATACATCACTGTCGAATATCAAGTGGACTCTC
TCTTGCACAAGCTGGCTGCCAAAGTCCCTGTAGTGGCCGTGTGCGATGGA
ATCGTGATGGGAGGGGGCGCCGGGATCTTCCAGAGTGCCACTTTTCGAGT
CGTGACACCGACCTCCACGTTCGCCATGCCGGAATGCAGGATTGCCATCC
TCCCTGACGCTGGGGCCATGAGTTTCCTGTTCCGGGCCCCTGGGGAGGTC
CCTTTGTACTGCGCACTGACCGGCGCGCGCCTCCAAGGCCGCTGTATGCA
AGCTGTAGGCCTCGCCACTCACGTGGTCGAGTCCAAGGGCATCCCGAACC
TTCTCTCTCTCTTGCGGACGGAGGACCCGGAGAACTTCACAGAGATTCTG
ACTACAAGGCAGGTTGCGGAGATGGAGCTGGGAGAAACGCCGATTGAAGC
AAGGAGACCGGTCATCGATGCTGTCTTTGCCCATAACACTGTTCGGGAGA
TCTACAACGCTTTGGTGGAGATTCGGCAGCAGGAGGTGCAGGAAGCCCAC
GCTGCGGAATCCGCTTCAGTGTGTCGTGGGAAGGATCTTGGAGGCGGTAA
CACGAAAACGGAGGGGACGGAGGGAAAGGAAAGCAACAGTGGCGAAGGAC
GGGGTAGGAATGAAAGGGGGGAAAGCTGGATTGAAACTGCTTTGGCGGCT
TTAACGTCGGAATGTCCCGCTTCGCATGTTGTCACGTTGCACGCTGTTCG
TACCGCCCAGTGTCGGGGCCTAGATAAGTGGGACATAGACCAAGGTCTTG
GTATCGAGCACGTGGCTAATCGATGCTTGGGTTTTCGTCAAGACTTCGTC
GAAGGCGTGAGCACGGCTGTCGGTACCAAGAAAGGGTCCAAACCGGTATG
GTCACATTCAGATTGGGAGGCAGTTGAACGGGACCCAGAGATCATCAAAT
TACTCCAAGCCATGACAAAATCAAAAGATTTTTGGGACGAAATTAACCAA
CGGACAGAGTGCATGCACTTGTGCGGCGCCGGAGACAAGCCTGCTGTGTA
CCCATTGGCAAGGGAGCCGGGCGTAGTCCTTGACTCGGTAGGACGGACCG
CGACTCCCTCTTGCACTGCGCATAGTGAGACTGGTGGGGGTCGACTGAGC
CTTCAACCTAAGTTGAGACAAACAACGGAAAAAGCCCGCACAGCTGGAAA
ACCGATGAAGCTGTCGGGTCAAGCATGCAATGCCCTGAGACTGGGCGCGG
TAGTCTTCTGCATGATATCATTTTGTGTCCAAGGCTTTATCACCCCGCGA
CCTTTGCCTCTGGTTGCTCCATTTTCCTCGCACAGAGGAGCGACCACCTT
CCATGATTCCGACGCTTACATGCCGAGCCCAAGCCCGTTCCGCGCCCCTC
AAAGCACGCAGCACCCAGGACAAGACGTGGACGGGACTTACACAAGTACA
CTGCAAGATCGATTATTTGAAACGGACTCGCGCCGGGTTATTTTGTTTGA
TGGCGACTGCGGTTTCTGCTCGGACGTGGTCAACCTCTTCATCAATTTTG
ACGGCGATCCGCGTGGAGCTTTTCGATTTGCGTCCCTGCAGGGTGAGATA
GGCCAGGAGCTTCTTACAGCCAACGGGCTTGACACAGAGCACTTCAACAC
CATCGTGCTTGTGGACAAGGACGAGGTCTTCACCTCCTCCGATGCCGTCT
TGGAAATCGCCGACCGGCTGAAGGAGCCTTTCCCCCAGCTGGCACGCTTG
GCCAAGGTTCTCCTACCGCACGTCTTTCGCGACGCCCTCTACAGCTTCGT
TTCTTCGAACCGACATTTGCTGGCCGGGGAGAAAGACTCGTGCCGGATCC
CGAGGAGGGAGGAGGGGAGGAGGGACTGTCTGGGAACGAATCCGGGGAGG
GTTGAAGGGAAGGACACGGGGGACGTGCACGTGTATATAGTGAATAGCCG
TGCGACAAGCCTCCGTAGATGTGCGAAGCCCTTTGTCCTCCGCTGA

protein sequence of rna8332

>rna8332-protein ID=rna8332-protein|Name=rna8332|organism=Nannochloropsis gaditana|type=polypeptide|length=665bp
MSHTKGRSHHADEEESVPPPPAQPEDESEDDSDDDFGPAPLPASNDSSAA
NDVSSARSKKKKKRRKLEHEEAFLAALPNADMYEKSYMHRDTVTQCAFTP
RTDFLITASEDGHVKFWKKMPEGLEFVKHYHAHLGPIRGLAVSGDGLRLA
TTGADKAIKFYDVLTFDLTYMLDVDFSPSHAVWVHRPGEAHGRLAVADAD
TPCLRIYRSDGSQAPIHTLPTMHAAPVTALAFSPSDALAISADVKGMLEY
WSTELEGGDGDAYTFPRKKVFFRSKLDSDLFEMLKRKTYITAMDVSRDGS
KLATVGKDRHIRVFDLRRGKLLRVYNEGLEVAEAAMATGTLGLDTIDFGR
RSAVEHELEGSAPDVMARNNAVFDETGHFLIYATLLGIKTVNVETNRVVK
VLGKIESGERFLRVCVFQGVPKVDSQMVKALNKGKTASSVEEMRAQLRPD
PTVVATAFNKRRFYLFTRRMPSDVEGEGLGEAGGRDVLNEKPTAEEATVA
SATDKAQQELGKAAILRTTMGDIHLKLFKEECPRTIENFVTHARNGYYDN
VLFHRVIKGFMVQTGDPQGDGTGGESIWGGEFEDEIHRNLRHDRPFTLSM
ANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVVQGMDVVSQISQVKVDPQ
DRPFADVKIINVDTL

mRNA from alignment at KK037248.1:396746..399424-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8332 ID=rna8332|Name=rna8332|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp|location=Sequence derived from alignment at KK037248.1:396746..399424- (Nannochloropsis gaditana)
CGCGACATCCATTGTCCACCTTCCACGTCAATTCGAACCCTAAGTAGCAA
TGTGCGTGGGGTTAGCGCCTATAGCTGAGAGGATCGTTGATTTTTGCTAA
AGAAGAGCAAACAGACGAGGAGCGTATCGCCTCCTCAGGCTGCCCTCCTC
CTGCCCTGTATCTCTGTCGCCAGTCCATTTTACCATCGGTGTACTATCGA
CTTACGCTCCTTGCGTCATAACTTCAACCACTACAATAGTTCGGACACCA
TTATGTCTCATACCAAGGGGCGGTCCCATCACGCGGACGAAGAGGAGAGC
GTCCCTCCGCCCCCCGCCCAGCCTGAAGATGAGAGTGAAGACGACAGCGA
CGACGATTTCGGACCGGCCCCCCTTCCTGCTTCCAATGACTCGTCAGCTG
CAAACGATGTCTCATCTGCACGTTCGAAGAAAAAGAAGAAACGGCGGAAG
CTGGAGCATGAAGAGGCTTTCTTGGCTGCTTTACCCAACGCAGACATGTA
CGAAAAGAGCTACATGCACCGAGACACAGTCACCCAGTGCGCGTTCACCC
CACGAACAGATTTCCTGATCACGGCCTCCGAGGATGGCCACGTCAAGTTT
TGGAAAAAAATGCCTGAAGGGTTGGAATTTGTGAAACATTATCACGCCCA
CCTGGGGCCAATTCGGGGACTGGCAGTCAGTGGAGACGGCCTCCGCTTGG
CCACGACAGGTGCAGACAAGGCGATCAAATTCTATGACGTCCTGACATTC
GATCTAACCTACATGCTGGACGTGGATTTCTCTCCAAGCCACGCGGTCTG
GGTCCACCGCCCCGGAGAGGCGCACGGGCGTTTGGCCGTGGCGGACGCGG
ACACGCCCTGCCTTCGCATCTACCGCTCTGACGGCAGCCAAGCTCCCATC
CATACGTTGCCGACCATGCACGCCGCACCTGTGACGGCCTTGGCCTTTTC
CCCCTCAGATGCGCTGGCCATCTCGGCGGACGTGAAAGGCATGCTCGAAT
ACTGGTCGACCGAATTGGAAGGCGGAGACGGGGACGCGTACACCTTCCCG
CGGAAGAAGGTTTTCTTCCGGAGTAAACTCGACTCGGACCTCTTTGAGAT
GCTCAAGAGGAAGACCTACATCACCGCAATGGACGTGAGCCGGGATGGAA
GCAAGCTGGCAACTGTGGGCAAGGACCGACACATCCGGGTATTTGACTTG
CGACGAGGGAAACTCTTGCGTGTCTACAATGAAGGATTGGAAGTGGCGGA
AGCGGCTATGGCCACAGGGACACTTGGTTTGGATACCATCGACTTCGGGC
GGCGTTCGGCCGTGGAGCACGAGCTGGAGGGCTCGGCCCCGGACGTGATG
GCGCGAAATAATGCCGTCTTCGACGAGACCGGTCACTTCTTGATCTACGC
GACGCTGTTGGGCATCAAAACGGTGAACGTGGAGACGAACCGAGTGGTGA
AGGTGTTGGGGAAGATCGAGAGCGGGGAGCGCTTCCTCCGGGTATGTGTG
TTCCAAGGGGTGCCCAAGGTCGACTCGCAGATGGTCAAGGCGCTGAACAA
GGGCAAGACAGCCAGCAGCGTGGAGGAGATGCGGGCCCAGCTCCGGCCCG
ACCCCACTGTGGTAGCGACGGCCTTTAACAAGCGGAGGTTCTACTTGTTC
ACGCGCCGCATGCCCAGCGACGTGGAGGGGGAGGGGCTGGGGGAGGCGGG
CGGTCGGGACGTGTTGAACGAGAAGCCGACAGCCGAGGAGGCCACGGTGG
CCTCGGCGACGGACAAAGCCCAGCAAGAGCTGGGGAAAGCGGCGATTCTG
AGGACGACGATGGGAGACATCCACCTGAAGCTGTTCAAGGAGGAGTGCCC
GCGGACGATCGAGAACTTCGTGACGCACGCTCGGAACGGGTACTACGACA
ATGTTCTCTTCCATCGCGTCATCAAGGGGTTCATGGTCCAGACGGGCGAT
CCGCAGGGGGACGGGACGGGGGGCGAGAGCATTTGGGGTGGGGAGTTCGA
GGACGAGATACATCGGAATCTGCGGCACGACCGGCCGTTCACCCTCTCCA
TGGCCAATGCGGGGCCCAACACGAACGGGAGCCAGTTTTTCATCACCACG
GTGCCGACGCCTTGGCTGGACGGGAAGCACACGGTCTTCGGGCGCGTCGT
CCAGGGCATGGACGTGGTCAGCCAGATCTCCCAGGTGAAAGTGGACCCAC
AGGACCGGCCCTTCGCGGATGTGAAGATCATCAATGTAGACACCTTGTAG
GGAGGGCTTGGTCGAGCAGGGAGGCGGGCCTCGCCGTGTAAAAATGGAAG
GAGGGAGAAAAAGGCGAAATTTGCTCAAAACACAAGATTGCCAGAAACGC
CCGAGGCAAAGGAAAAAGAAAGCTAGAGGGCTGTCCTACATGTCTTCCTT
CTTGCCTAACGTGGTTACTTGGCTGCACGCCCGGCCCCCCTGCCTATGAA
AACTTTTTTCCTCCGCTTTCAGCAGCCTACTTTATGTACATTCACTAAAT
TCTGGCCCATACGCCGAACCCTGGCAGGTCTTCCTTCCTCCTTCCCACAA
TATTCGTTCAGCCTCCCCGCCATGGTTTCCGTCTTATGAATTTCTTGCTT
CCTCCTTTGCACCACGCACCTTTTTAATTCTATGGCAAGCGCAGTCTGTC
TTCATCTTCAACACATATTGTATAAAACA

Coding sequence (CDS) from alignment at KK037248.1:396746..399424-

>rna8332 ID=rna8332|Name=rna8332|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at KK037248.1:396746..399424- (Nannochloropsis gaditana)
ATGTCTCATACCAAGGGGCGGTCCCATCACGCGGACGAAGAGGAGAGCGT
CCCTCCGCCCCCCGCCCAGCCTGAAGATGAGAGTGAAGACGACAGCGACG
ACGATTTCGGACCGGCCCCCCTTCCTGCTTCCAATGACTCGTCAGCTGCA
AACGATGTCTCATCTGCACGTTCGAAGAAAAAGAAGAAACGGCGGAAGCT
GGAGCATGAAGAGGCTTTCTTGGCTGCTTTACCCAACGCAGACATGTACG
AAAAGAGCTACATGCACCGAGACACAGTCACCCAGTGCGCGTTCACCCCA
CGAACAGATTTCCTGATCACGGCCTCCGAGGATGGCCACGTCAAGTTTTG
GAAAAAAATGCCTGAAGGGTTGGAATTTGTGAAACATTATCACGCCCACC
TGGGGCCAATTCGGGGACTGGCAGTCAGTGGAGACGGCCTCCGCTTGGCC
ACGACAGGTGCAGACAAGGCGATCAAATTCTATGACGTCCTGACATTCGA
TCTAACCTACATGCTGGACGTGGATTTCTCTCCAAGCCACGCGGTCTGGG
TCCACCGCCCCGGAGAGGCGCACGGGCGTTTGGCCGTGGCGGACGCGGAC
ACGCCCTGCCTTCGCATCTACCGCTCTGACGGCAGCCAAGCTCCCATCCA
TACGTTGCCGACCATGCACGCCGCACCTGTGACGGCCTTGGCCTTTTCCC
CCTCAGATGCGCTGGCCATCTCGGCGGACGTGAAAGGCATGCTCGAATAC
TGGTCGACCGAATTGGAAGGCGGAGACGGGGACGCGTACACCTTCCCGCG
GAAGAAGGTTTTCTTCCGGAGTAAACTCGACTCGGACCTCTTTGAGATGC
TCAAGAGGAAGACCTACATCACCGCAATGGACGTGAGCCGGGATGGAAGC
AAGCTGGCAACTGTGGGCAAGGACCGACACATCCGGGTATTTGACTTGCG
ACGAGGGAAACTCTTGCGTGTCTACAATGAAGGATTGGAAGTGGCGGAAG
CGGCTATGGCCACAGGGACACTTGGTTTGGATACCATCGACTTCGGGCGG
CGTTCGGCCGTGGAGCACGAGCTGGAGGGCTCGGCCCCGGACGTGATGGC
GCGAAATAATGCCGTCTTCGACGAGACCGGTCACTTCTTGATCTACGCGA
CGCTGTTGGGCATCAAAACGGTGAACGTGGAGACGAACCGAGTGGTGAAG
GTGTTGGGGAAGATCGAGAGCGGGGAGCGCTTCCTCCGGGTATGTGTGTT
CCAAGGGGTGCCCAAGGTCGACTCGCAGATGGTCAAGGCGCTGAACAAGG
GCAAGACAGCCAGCAGCGTGGAGGAGATGCGGGCCCAGCTCCGGCCCGAC
CCCACTGTGGTAGCGACGGCCTTTAACAAGCGGAGGTTCTACTTGTTCAC
GCGCCGCATGCCCAGCGACGTGGAGGGGGAGGGGCTGGGGGAGGCGGGCG
GTCGGGACGTGTTGAACGAGAAGCCGACAGCCGAGGAGGCCACGGTGGCC
TCGGCGACGGACAAAGCCCAGCAAGAGCTGGGGAAAGCGGCGATTCTGAG
GACGACGATGGGAGACATCCACCTGAAGCTGTTCAAGGAGGAGTGCCCGC
GGACGATCGAGAACTTCGTGACGCACGCTCGGAACGGGTACTACGACAAT
GTTCTCTTCCATCGCGTCATCAAGGGGTTCATGGTCCAGACGGGCGATCC
GCAGGGGGACGGGACGGGGGGCGAGAGCATTTGGGGTGGGGAGTTCGAGG
ACGAGATACATCGGAATCTGCGGCACGACCGGCCGTTCACCCTCTCCATG
GCCAATGCGGGGCCCAACACGAACGGGAGCCAGTTTTTCATCACCACGGT
GCCGACGCCTTGGCTGGACGGGAAGCACACGGTCTTCGGGCGCGTCGTCC
AGGGCATGGACGTGGTCAGCCAGATCTCCCAGGTGAAAGTGGACCCACAG
GACCGGCCCTTCGCGGATGTGAAGATCATCAATGTAGACACCTTGTAG

Synonyms

Publications