rna8328, rna8328 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8328
Unique Name	rna8328
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3522
Alignment location	KK037248.1:386541..388745 +

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Properties


Property Name	Value
Product	Uncharacterized protein family UPF0118
Orig transcript id	gnl\|cribi\|Naga_100066g15.10339.mrna
Orig protein id	gnl\|cribi\|Naga_100066g15.10339
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:386541..388745 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g15	gene8067	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8328	rna8328-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22382.1	cds8301	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:386541..388745+
coding sequence from alignment at KK037248.1:386541..388745+

mRNA sequence

>rna8328 ID=rna8328|Name=rna8328|organism=Nannochloropsis gaditana|type=mRNA|length=3522bp
AGACACACTGAGGCAATAGGTCTGTCTGGGGCGCCAACGTGTGCCATTAG
AAGCAAGTGGGTTCACCCTCTCGTTCTTCCGGCCCATATTGCCTAGACTC
GCCTAGGGGTACTCTTAAACGCTTCGACAGCCGACGCTGTCGATCGCCAC
TGCCATTATGCAGGCAGCATCGCCAGAGCACATTTACGACGATATACTGT
ACGTGGAAGAGGATGCAGAGCAAAGCGTGGAGCTATCACAGGAAGCGAGA
TGCCGGGTTAAGGAGGGCAAAGACGGGGAGGACAGCGAAGACGGTAGCAG
TGATGGCTATCTTGAAGAGGAGGAGGAGGAGGGAGAGGAGGAAAACGATT
TGAGAGGAACGTTTGAGGACAATTTTGATGCTTTTGTCGATGATTGGGGC
GAGGAAGATGAATTCACCTGTGCGTGGGACCGCAGTCGAAGCAACGAGGC
TAGTGAGGCGAGAGGAAACGAGGCGGCCGAGCTCCGGCAATTAAGTCTGG
AGGTGTCCAACACTGGGGTCAAATTAGACGGAAATACGACTCTGGATACA
CTCGCGGTAACGGCCGGCCGCAGACGGAGCACTCTTTACCACACCTTCAC
GCAAAGCCTGTTAATGGAGGCCAAGCTCCACCAGCAGCAGCGCGACAACT
TCCAGAGGGGACGCCTGCGGCACGCAGTCTACGTCCTTCAGCGCGGATTC
AGCCTCAAGAAGAAGGCGGAGCATGAGAAATCGTACAAGGAGCGGTTTCT
CTTCCTAAGCGACGATCTGAGGTCCCTGCGTCTGGCCAAATCGGGCCAAA
CCCGGCATAAAGCCAAGCACATCGCTCAGCTCCGAGACGGCCTTCAGATG
GTGAGGGCGGGGCCCACCCTTCGACATCGACGGGACGCGGAGCAACTCAA
CTTTCACTCGACCACTTTCACCCTGCACGTGCGCAAGGGGAAGGAGGGTA
GTTTCAGCCACCTGGGCCACGGGGGTCTGACGGGAACGACCCCCCCGGGC
CCGGAGAAAGTGATCGACATCTGGTGCTCCTCGGAGAGCCACTGCGAGGA
ATGGTTGAAGTGCTTGCCACTGATCGTGAATGCCACGGTCTGCCCCGAGC
ACGGGCCCCGGGAGTTGATCTGGAGCGAGCCCGTGGGGCAGGGGGCCGGG
ATGGAGGCAGGAGGGTGGGTGGAGGGCCCGCGGCCCTACTTGGAGGGGCT
GGCTGAGGAATTAGCGCGTTCCTCCATCGTCTACTACATGGACGTGCAGC
AGAGACGGCTGCGGCGCCGGACGTTGCGACAGAGCGCGCAAGGTCGAGAT
ATAGGCGCGGCGGTGGCGGCTGCCATGGCGGTGCATGGCGGGGACAAAAG
TAAGACTCCCCATCAACGGAGCACAGATAATTCTAGCGGCAGCCAAGCCA
GCAGCAACACCACCGCAGGCAAAGGGGAGGGCCAGGGGAACCACAACGGA
AGCCACCTGCAGAACGCGATGAAGAAGATGCACATCGAGCATTTCTTGTC
CAAGGCCAGGGAGGGCCATGGGGGGGGAAGCCCCTCCGGGCCGGGACTTG
AACCCGTGCACCCGGCAACCACAGCCGCCAGCGCTGCCGCCAGCGCGGCC
GTGCTCCTTCTCCGGCCACGTTCGTTGAACGAGCTTCTGAGCTTTCACGC
GTCCCCGACCAAGCGTCCTTTCCATGCTTACCTTCGCGAGGAGGGGGCGG
CCGCGGCCCTCAAGGCGTTTCGGCTCATCATGGTCTACATGGGCGACCTG
GACGCGGTGGTGCAAGAAGAGGAGCAGGAACCGGGGGAGGAAGGACACCT
CTGGAAGTCCCCACGCCCACACCGTCCGGCAGGAGGGAGCTGTACCAGCC
AAAACAACGGCTCGGATCGGCTCCGTCACCATTCCTTCTCCAGCACCGCG
AGCATCTCCTGGCCCTTTCCCGGCGGTCAAACGCAGGCACCGCGTCCTTT
TTCGTCTCCATCGCCCTCCGAGTCCCCTCAATCCTCCTTCTCCTGCTCGT
CCCCCGCCAGCAAGGCCGGCGAGGCCGATGGCGAGGCCCAGCACGCCCTC
CTCCTCCACCTCTGTGCCCTCGGCCAGGCCCCCAGCCGGGAGCCCGGCGC
CTGCCTCAAACCGCACGCGTGGATGCACGACTTGCGCAACGAGCTGTACG
TGGCCGCGCTCGCCCAGACGATTCAGAACCCGGACCCTGCTTCCTGTTTG
CGCGGCTGGCGCCTGCTGGTCGCTTTCGCGCATTCGTTCATGCCGACGGA
CGATGACCTCCGCGAGTGCCTCATCTGGCACGCGGACCGGGCCTGCCACC
AGTACGCCGCCCCTCCGCCCTTGCCTCCGGCCTCGGGGGGGGGCAGGGGA
AGCGAAGGAGGGAGGGAGAGCAAGGAGATGAGGACCGGGGGCCGGGGCCT
TGATGCCAGCGGCTTGGCCTACCACGCCTACACCGTCTTCGTGAACACAG
AGCGGGATCTTCAGCAGCCACCAGGTCGGGATTGCGCAAGCGGAAGGGAG
GGAAGGGCCGCCCCGGTGGGCCTGACCGTCGCGGAGTTGGACCGTATCCA
AGCCTTGGTCATCCCGCCCACGGTCTTCGACTGCTCCTTGGAAGAGGTCC
TGCGGAAGGAGCTGGTCGTTGTCCGAGGGGGCGGAGGAGGGGGGGGCGGA
GGCCTCCCATCGAGCGAGATGCTCCTGGAGAATGGGAACGTGCCGTTGAT
CGTCCAAGTCCTGATCCGAAAATTCCAAGAGCTGGAGGGCTACGAGGTGG
AAGGCATCTTCCGTCGCGCTGCCGTCACGGAGCGCGTGCTCGCAGTCAAG
CAGGGCCTGGAGGACGGGAGCTACGTGGTGTACGGGACCGAGGCCGTGGA
CACGACGGACCCGATGGTGGTGGCCGACCTGCTCAAAGCCTGGCTTCGGC
ACCTGCGGGAGCCTCTCGTCCCCTTGCAGCATTATCGACGCGCCCTGGAC
GCGGGCCAGGCCCAAGACCTGGCGCCGACGCTCGCGTTCCTCGACACGGT
CCTCCCCAAGGCCAATGCGGCCACCTTGGTCTACCTGATCCATTTTCTGA
ACCACTGCGCCGAGCTCTCTCAGTTCAATCAAATGACGCCCAGGAACCTG
GCCATCGTCTTCTCTCCGAACCTCCTCCGCCATCCCTCCAACGACCCCAT
GCTCATGGTCCAAAACGCAGAAAACGAGAGGAAGTTCGTCATTCAGCTCA
TGCGTGCCCTTGTCAGTCCCGCCGAACCCTCTCCTACGACCGCTTCGCCG
TCGGTGCCTCCACTTGTCTCCTCGCGATGATTTGCACTTGGAGAAACACG
CTAATTTGGCGGACTCTATTGAAGTGCAAAAAATGTAAAGCAGGACCTTG
ATTGAAATGCAAACGATTGTAAATATCGGTCAGGTGGTCGACCGAGGCGG
CGCTGAGAAGCTCTTGGTTCCTTGGCTCGATGGGAAGAGCGAGGATCAAG
AGGGAGGCCGATCACTTCACTGAGGACGCGTGGTGATCGCCCAAAAACAT
CCAATTAACCGACCTATAAATC

protein sequence of rna8328

>rna8328-protein ID=rna8328-protein|Name=rna8328|organism=Nannochloropsis gaditana|type=polypeptide|length=734bp
MRPPIITMRPPLSVVVAFLTYCGAFWSLTNGSAFVHAFVMPSFPCGHSQL
FTARDLSQPNLYLWQPRQRQQAHFSSFWLDPTRDTPLEEWNISEDHPGVP
PTEAGNQVEDDFEGGDEGERRNAEYGRGRSIGGVASLCTDTAPANEIYKA
ANPSEETKLRASEDGVSRGKKDGFNVFKTISGGGLGGRGRFRPSFFTRSK
DTFPSCMPRSNHVEGSRRAKAPRISAPVGPSGTASSTSTQSSAGSSAPLV
SMPNLPSAKPASSQKSKALQGSSSANDYLDSVQASTSPGNNSNMQVLLSM
VQSDPSKRLLVWAAFLGLGWTLRSFYGIILGTFVLSYIGSSAVRWSEEKG
NELGGRLKLPPLPRRFWALAYVVLVLSSFVSLTVVTVPRVVGETNYLSLL
IESENPYVFVADGVRRLLGPDFSGKVEAFLLSVTGEEGRAFATGVLSATS
PTSSLFSGPSASSSTSSAAAAASVARKRLSQPLNGLPLEAWTPARSSRFA
KLMEYSLKGYIKQAYFVTQKLLTSSTKLVYKGLLSLLFSFMIIWDLPRLA
RGTQRLARSRFGYAYSVLAPQLTAFGRLVGQSFEVQSIIALVNTLLTTLG
LVFLKIPGYGFMSLVVLITSFIPVFGVFLSTLPMALVAVSEYGVGKMIDV
ILMVIGVHVVEAYCLSPLIYSATVKLHPVLIVAALYMMEHLAGLQGVFLA
VPVTMFVIRQVLGIPADGHGKGSLEAREGQVVQA

mRNA from alignment at KK037248.1:386541..388745+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8328 ID=rna8328|Name=rna8328|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp|location=Sequence derived from alignment at KK037248.1:386541..388745+ (Nannochloropsis gaditana)
ATGCGCCCTCCCATTATCACCATGCGACCTCCCCTTTCCGTCGTCGTCGC
CTTTCTGACCTACTGTGGCGCGTTTTGGTCTCTTACAAACGGATCAGCAT
TTGTGCATGCATTTGTGATGCCATCGTTTCCTTGTGGGCATTCACAGCTC
TTCACGGCTCGAGATTTGTCTCAGCCCAACTTGTATCTCTGGCAGCCACG
GCAGCGTCAGCAGGCACACTTTTCATCCTTCTGGCTTGACCCGACCAGAG
ATACCCCCTTAGAAGAGTGGAACATCTCTGAAGACCACCCAGGCGTCCCA
CCGACGGAAGCAGGGAACCAAGTTGAAGACGAttttgagggaggggacga
gggagagcgcaGAAACGCTGAGTACGGCAGGGGAAGATCTATCGGTGGTG
TAGCCTCCTTGTGCACGGATACCGCGCCTGCAAACGAAATCTACAAGGCT
GCAAACCCTAGCGAAGAGACAAAATTAAGAGCCTCAGAGGACGGAGTTAG
TcgagggaaaaaggacgGGTTCAACGTGTTCAAAACCATCAGCGGGGGCG
GCTTGGGCGGTCGTGGGCGCTTTCGACCGTCCTTCTTCACGCGCAGCAAA
GATACCTTCCCGTCCTGTATGCCCCGCTCTAATCACGTAGAGGGTAGTAG
GAGAGCAAAGGCGCCCAGAATTTCGGCGCCCGTGGGGCCCAGTGGCACGG
CCTCATCGACCTCCACCCAGtcctccgccggctcctccgcccccctcgtt
TCCATGCCCAATCTCCCTTCGGCGAAaccggcttcctcccagaAGAGCAA
GGCACTACAAGGTAGTAGCAGTGCCAACGATTACCTTGACAGCGTTCAGG
CATCCACGTCCCCCGGGAACAACAGTAACATGCAAGTCTTGCTCAGCATG
GTGCAGTCGGACCCGTCCAAGCGCCTCTTGGTCTGGGCGGCCTTTTTGGG
CCTTGGGTGGACCCTCCGGTCCTTTTACGGCATCATCTTGGGCACATTTG
TCTTATCCTACAtcggctcctccgccgtgcgctggagcgaggagaaaggc
aacgAGCTGGGCGGGCGGCTCaagctgccccccctcccccgccggtTCTG
GGCCTTGGCCTATgtggtcctcgtcctcagcAGCTTCGTGAGCTTGACCG
TGGTCACCGTTCCTCGGGTTGTGGGGGAGACGAACTATTTGTCCCTCCTG
ATCGAAAGCGAGAATCCCTACGTCTTTGTCGCGGACGGCGTTCGACGGCT
TCTGGGGCCCGACTTCTCGGGAAAAGTggaggccttcctcctctctgtca
caggggaagagggccgtGCATTCGCCACGGGCGTGCTCTCTgccacctct
cccacctcctccttgttctccggtccctccgcctcgtcctcgacctcctc
tgccgccgccgccgcctccgtggcTCGGAAGCGCTTGAGCCAGCCCCTCa
acggcctccccctcgaagCCTGGACCCCGGCTCGCTCCAGCCGCTTCGCC
AAGCTCATGGAGTATTCCTTGAAAGGTTACATCAAACAAGCCTATTTCGT
GACCCAGAAGCTCCTCACCTCCAGCACCAAGCTCGTCTACaagggcctcc
tctccctcctcttctccttcatgaTCATCTGGGACCTGCCCCGCCTGGCC
CGAGGCACCCAGCGACTGGCACGCTCCCGCTTCGGCTACGCCTACTCGGT
TCTAGCGCCTCAGCTTACCGCCTTTGGGCGCCTGGTGGGGCAGAGTTTCG
AGGTGCAATCCATCATCGCGCTAGTCAACACCCTGCTCACCACCCTgggc
cttgtcttcctgaAAATCCCGGGCTACGGCTTCATGAGCCTGGTCGTGCT
CATcacctccttcatccccgtcTTCGGCGTCTTTCTCTCCACGCTGCCTA
TGGCCCTGGTCGCGGTGAGCGAGTACGGGGTGGGGAAGATGATCGACGTG
ATCCTGATGGTCATCGGCGTCcacgtggtggaggcctattgcctctcccc
cctcatcTACTCCGCGACCGTGAAACTCCACCCGGTCCTGATCGTGGCTG
CCCTTTACATGATGGAGCACCTGGCGGGGCTGCAGGGGGTCTTTCTGGCG
GTGCCTGTCACCATGTTTGTGATCCGGCAAGTACTGGGTATCCCTGCGGA
CGGGCATGGGAAGGGGAGTctggaagcgagggaggggcaggtgGTGCAAG
CCTAG

Coding sequence (CDS) from alignment at KK037248.1:386541..388745+

>rna8328 ID=rna8328|Name=rna8328|organism=Nannochloropsis gaditana|type=CDS|length=2205bp|location=Sequence derived from alignment at KK037248.1:386541..388745+ (Nannochloropsis gaditana)
ATGCGCCCTCCCATTATCACCATGCGACCTCCCCTTTCCGTCGTCGTCGC
CTTTCTGACCTACTGTGGCGCGTTTTGGTCTCTTACAAACGGATCAGCAT
TTGTGCATGCATTTGTGATGCCATCGTTTCCTTGTGGGCATTCACAGCTC
TTCACGGCTCGAGATTTGTCTCAGCCCAACTTGTATCTCTGGCAGCCACG
GCAGCGTCAGCAGGCACACTTTTCATCCTTCTGGCTTGACCCGACCAGAG
ATACCCCCTTAGAAGAGTGGAACATCTCTGAAGACCACCCAGGCGTCCCA
CCGACGGAAGCAGGGAACCAAGTTGAAGACGAttttgagggaggggacga
gggagagcgcaGAAACGCTGAGTACGGCAGGGGAAGATCTATCGGTGGTG
TAGCCTCCTTGTGCACGGATACCGCGCCTGCAAACGAAATCTACAAGGCT
GCAAACCCTAGCGAAGAGACAAAATTAAGAGCCTCAGAGGACGGAGTTAG
TcgagggaaaaaggacgGGTTCAACGTGTTCAAAACCATCAGCGGGGGCG
GCTTGGGCGGTCGTGGGCGCTTTCGACCGTCCTTCTTCACGCGCAGCAAA
GATACCTTCCCGTCCTGTATGCCCCGCTCTAATCACGTAGAGGGTAGTAG
GAGAGCAAAGGCGCCCAGAATTTCGGCGCCCGTGGGGCCCAGTGGCACGG
CCTCATCGACCTCCACCCAGtcctccgccggctcctccgcccccctcgtt
TCCATGCCCAATCTCCCTTCGGCGAAaccggcttcctcccagaAGAGCAA
GGCACTACAAGGTAGTAGCAGTGCCAACGATTACCTTGACAGCGTTCAGG
CATCCACGTCCCCCGGGAACAACAGTAACATGCAAGTCTTGCTCAGCATG
GTGCAGTCGGACCCGTCCAAGCGCCTCTTGGTCTGGGCGGCCTTTTTGGG
CCTTGGGTGGACCCTCCGGTCCTTTTACGGCATCATCTTGGGCACATTTG
TCTTATCCTACAtcggctcctccgccgtgcgctggagcgaggagaaaggc
aacgAGCTGGGCGGGCGGCTCaagctgccccccctcccccgccggtTCTG
GGCCTTGGCCTATgtggtcctcgtcctcagcAGCTTCGTGAGCTTGACCG
TGGTCACCGTTCCTCGGGTTGTGGGGGAGACGAACTATTTGTCCCTCCTG
ATCGAAAGCGAGAATCCCTACGTCTTTGTCGCGGACGGCGTTCGACGGCT
TCTGGGGCCCGACTTCTCGGGAAAAGTggaggccttcctcctctctgtca
caggggaagagggccgtGCATTCGCCACGGGCGTGCTCTCTgccacctct
cccacctcctccttgttctccggtccctccgcctcgtcctcgacctcctc
tgccgccgccgccgcctccgtggcTCGGAAGCGCTTGAGCCAGCCCCTCa
acggcctccccctcgaagCCTGGACCCCGGCTCGCTCCAGCCGCTTCGCC
AAGCTCATGGAGTATTCCTTGAAAGGTTACATCAAACAAGCCTATTTCGT
GACCCAGAAGCTCCTCACCTCCAGCACCAAGCTCGTCTACaagggcctcc
tctccctcctcttctccttcatgaTCATCTGGGACCTGCCCCGCCTGGCC
CGAGGCACCCAGCGACTGGCACGCTCCCGCTTCGGCTACGCCTACTCGGT
TCTAGCGCCTCAGCTTACCGCCTTTGGGCGCCTGGTGGGGCAGAGTTTCG
AGGTGCAATCCATCATCGCGCTAGTCAACACCCTGCTCACCACCCTgggc
cttgtcttcctgaAAATCCCGGGCTACGGCTTCATGAGCCTGGTCGTGCT
CATcacctccttcatccccgtcTTCGGCGTCTTTCTCTCCACGCTGCCTA
TGGCCCTGGTCGCGGTGAGCGAGTACGGGGTGGGGAAGATGATCGACGTG
ATCCTGATGGTCATCGGCGTCcacgtggtggaggcctattgcctctcccc
cctcatcTACTCCGCGACCGTGAAACTCCACCCGGTCCTGATCGTGGCTG
CCCTTTACATGATGGAGCACCTGGCGGGGCTGCAGGGGGTCTTTCTGGCG
GTGCCTGTCACCATGTTTGTGATCCGGCAAGTACTGGGTATCCCTGCGGA
CGGGCATGGGAAGGGGAGTctggaagcgagggaggggcaggtgGTGCAAG
CCTAG

Synonyms

Publications