rna8320, rna8320 (mRNA) Nannochloropsis gaditana

Overview
Namerna8320
Unique Namerna8320
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1074
Alignment locationKK037248.1:366016..367875 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100066g6.10322.mrna
Orig protein idgnl|cribi|Naga_100066g6.10322
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:366016..367875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100066g6gene8059Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8320rna8320-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22365.1cds8293Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8320 ID=rna8320|Name=rna8320|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGCCAAAACCGACAACACAAGACAAAGCATTGGAACCAGAATCGCGATT
ACCCCTGGCTCTCATAATCGGAGGCACGGGCTTACAGGGCTCTGGTTGCA
TCCAGGATTTGATTGTCAGTAATCGTCTACGGCTGCGTACTACCTCACGA
AACGCCAGGAGTAAGGCAGCATTGGCTCTTACCGCCCACGGTGTTGAGCT
TTATGAAGGTAGTCTGCTTGACCGTCCCTTCGTGGGACGGGCCATGGCAG
GGGTGCATTCACTATTCCTGGTGACATTTTCTGATCACGACGGCTCCGAG
GTACAACAAGGCAAGAATTTGGGGGACGCAGCGATAGCGGCTGGCGTGAA
ACGCGTCGTGTTCTCAGGTGGAGAGCGTATTGGGGTGTATGCGATGGATA
ACAAGTTCCAAATAGAGGAATACTTGCGCACTTTGAATTTCTCCCACATA
GTTTATCTCCATACTGCCTTTTTTTACGAGAATATTGTCACCAAAAGGGG
CACGAAACGGGTGCGTATTGAGCGTAATCCCTCATCAGGACGTATTAGCA
GATATTTTTTCTCTATTCCTCTGCTAGAAGATATGGCCATTCCATTCATT
TCCCCGAAGGATATCGGAAGGGTGGCTGCCACTGTCCTCCTCGCCCCGCA
TTCGGATATTCCTTCTGAAATTGTGCTCCCCATAGCCGGGGACGTGCTTT
CACCTAAGCAATTTGTTGAAAAGGTGGCTAACTTGACAGGTGTGGAATCA
TCCTACACCCAGCTCCCACTTGATTTTTTCCAACGTTTGCCTATCCCAGG
ATCAGAGCTCATCGTTGAGATGTACAAATGGTACCACGCAAGATGTCCAG
GGGAAGGTCACTCACGCGACCCAGAATCTACTCGGTCCTTGTGCCCTTCT
GTGCGAAATGCGGACGAATGGCTGCAAAGCGGTGGTCTTCGTTTGATCAA
TGACATGGCCTTTGAGGACGGTGTTATTAATCAGATCAAGGACGCTTTGA
TGGGAACTATTATTCGCGTCTATGGAGTTTATTCAAGGATAGGTTCAGGG
AGAGACCATGAAGGCAAGCAGTAG
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protein sequence of rna8320

>rna8320-protein ID=rna8320-protein|Name=rna8320|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MAAAAAPTHPAIFARPASNPKPTSSARERWRRRRSQARCRSMIPCQFFGG
LPCNLFFALVVLAFSLQYHAVRAESCANFQDCFTCSNSSISCHWCGKDNK
CHAIGSPYGCLTGVNCYGSEACVRSEPEAKPHPAPSGSVLVGLGIFLLTS
LFCTSACFFVANEYVKHATVVRMEKDPNYQELLAFDEEEEGLAGRSRSGP
SKGGGEGVLGERRPQGSGGEDVWDPVPRIRVEERSRFLVVCSQVIRAALI
LTLAWLVMVAVAVFLYTPQVPDVNVCNTALDWGSLFTGLERLKLEADYQL
LLSVYNPNRLDVAISSGQGVFKHDHEAIGQVEVAPFLIKGGAITDVLVTL
VFTPSVWKSLQLDLAFQTGSLMLMVDMNVAGRVIWNGRRLFPFTYGLQNY
FIHVGKETTGGPRHLCNCTAW
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mRNA from alignment at KK037248.1:366016..367875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8320 ID=rna8320|Name=rna8320|organism=Nannochloropsis gaditana|type=mRNA|length=1860bp|location=Sequence derived from alignment at KK037248.1:366016..367875+ (Nannochloropsis gaditana)
AGCTGTGATTATAAAGATGTTTTTTGTTGTCCTTCTGGCTTTGCGTCCTC
GTATTGTTGCGGTCCTGTCTACAGTCGACGACCTTATGCAACCTTCCCTt
atctccttgtcctttcAGGGTCACTTCCCTGGGTGTGTTTATCATCACAT
TTCCCGCTTGAAGTGGTCTCGTTGCTTCTTCGAGGCGGCTTCGGGCCACC
ATggccgccgcagcagcaccaaCGCACCCCGCTATTTTTGCCAGACCGGC
ATCCAACCCCAAGCCAACGTCGAGCGCAAGGGAACGATGGAGAAGGCGTC
GGTCTCAGGCGCGGTGTCGAAGCATGATCCCGTGTCAATTTTTTGGTGGC
CTCCCCTGCAacctcttctttgcccttGTTGTGCTCGCGTTCTCTCTTCA
ATACCATGCTGTCCGTGCTGAGTCGTGCGCCAATTTCCAAGACTGCTTTA
cttgcagcaacagcagcattTCTTGTCACTGGTGCGGAAAAGACAACAAA
TGCCACGCCATTGGCTCTCCTTACGGGTGCCTGACGGGCGTGAACTGCTA
CGGAAGCGAGGCCTGCGTGCGTTCGGAACCGGAGGCGAAGCCGCACCCTG
CCCCATCAGGCTCTGTCCTAGTGGGTTTGGGCATCTTCCTTCTTACCTCC
CTGTTTTGCACGAGCGCCTGCTTCTTCGTGGCGAACGAGTACGTGAAGCA
TGCGACGGTGGTGCGAATGGAAAAAGATCCGAACTACCAAGAACTCCTGG
CtttcgacgaggaagaggagggactggcGGGGCGCAGTCGATCGGGTccg
agcaagggaggaggagaaggggtgTTGGGTGAAAGGCGACCCCaaggcag
cggaggggaggatgtcTGGGACCCGGTGCCCCGGATCCGCGTGGAGGAAC
GGTCTCGCTTCCTGGTCGTGTGCTCGCAAGTCATCCGTGCCGCGCtcatc
ctcaccctcgccTGGCTGGTCATGGTGGCTGTGGCGGTCTTCTTGTACAC
CCCGCAGGTCCCGGACGTGAACGTGTGCAACACGGCCTTGGACTGGGGCT
CCCTCTTCACGGGCTTGGAGCGCCTGAAGCTCGAAGCAGACTACCAGCTG
CTCTTGAGCGTGTACAACCCCAACAGGCTGGACGTGGCCATCAGCAGCGG
GCAAGGCGTCTTCAAGCACGACCACGAGGCGATCGGacaggtggaggtgg
cgccTTTTCTGATCAAGGGGGGCGCCATCACGGACGTGCTGGTGACCCTG
GTCTTTACGCCCTCCGTATGGAAAAGCCTCCAGCTCGACCTGGCCTTCCA
AACCGGCTCCCTCATGCTCATGGTGGACATGAACGTGGCGGGACGGGTGA
TTTGGAACGGGCGGAggctctttcccttcacgTATGGGCTTCAGAACTAC
TTCATTCACGTGGGCAAGGAGACGACGGGGGGCCCGCGCCATTTGTGTAA
TTGCACCGCGTGGTAGCGcgcccggagggagggagggagggagggaggga
gggagggggggaggaatgcgCGAGCGAAGATGGGCCTACATCTTAAGCCC
ACGTCTTGTGCGGCATGGGCGTGTGCTTGGCCCCTGGTTGAGGAAGGGCa
gctcagggaggagagggtctgGGGTGCCGGATAAGACAAGGATGgaccgg
ggggaggcaggggcggagggaaagtaCAAAGTTAGGTTGTGTGCATACGT
GGGTGAATGGGCTGAAAATCGGGTGAGGAATGCCGCCCTGAGGTCTCGGG
CCCGCGCTGCCATGATGACGAGACAGCTGGTAGGGGGGAGAAGCTCGGTC
GTCAGGACGGCGACACATGTACAAAGCAATAGAGAAGCAGCACAAAGCTT
CCTGGCCTCG
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Coding sequence (CDS) from alignment at KK037248.1:366016..367875+

>rna8320 ID=rna8320|Name=rna8320|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at KK037248.1:366016..367875+ (Nannochloropsis gaditana)
ATggccgccgcagcagcaccaaCGCACCCCGCTATTTTTGCCAGACCGGC
ATCCAACCCCAAGCCAACGTCGAGCGCAAGGGAACGATGGAGAAGGCGTC
GGTCTCAGGCGCGGTGTCGAAGCATGATCCCGTGTCAATTTTTTGGTGGC
CTCCCCTGCAacctcttctttgcccttGTTGTGCTCGCGTTCTCTCTTCA
ATACCATGCTGTCCGTGCTGAGTCGTGCGCCAATTTCCAAGACTGCTTTA
cttgcagcaacagcagcattTCTTGTCACTGGTGCGGAAAAGACAACAAA
TGCCACGCCATTGGCTCTCCTTACGGGTGCCTGACGGGCGTGAACTGCTA
CGGAAGCGAGGCCTGCGTGCGTTCGGAACCGGAGGCGAAGCCGCACCCTG
CCCCATCAGGCTCTGTCCTAGTGGGTTTGGGCATCTTCCTTCTTACCTCC
CTGTTTTGCACGAGCGCCTGCTTCTTCGTGGCGAACGAGTACGTGAAGCA
TGCGACGGTGGTGCGAATGGAAAAAGATCCGAACTACCAAGAACTCCTGG
CtttcgacgaggaagaggagggactggcGGGGCGCAGTCGATCGGGTccg
agcaagggaggaggagaaggggtgTTGGGTGAAAGGCGACCCCaaggcag
cggaggggaggatgtcTGGGACCCGGTGCCCCGGATCCGCGTGGAGGAAC
GGTCTCGCTTCCTGGTCGTGTGCTCGCAAGTCATCCGTGCCGCGCtcatc
ctcaccctcgccTGGCTGGTCATGGTGGCTGTGGCGGTCTTCTTGTACAC
CCCGCAGGTCCCGGACGTGAACGTGTGCAACACGGCCTTGGACTGGGGCT
CCCTCTTCACGGGCTTGGAGCGCCTGAAGCTCGAAGCAGACTACCAGCTG
CTCTTGAGCGTGTACAACCCCAACAGGCTGGACGTGGCCATCAGCAGCGG
GCAAGGCGTCTTCAAGCACGACCACGAGGCGATCGGacaggtggaggtgg
cgccTTTTCTGATCAAGGGGGGCGCCATCACGGACGTGCTGGTGACCCTG
GTCTTTACGCCCTCCGTATGGAAAAGCCTCCAGCTCGACCTGGCCTTCCA
AACCGGCTCCCTCATGCTCATGGTGGACATGAACGTGGCGGGACGGGTGA
TTTGGAACGGGCGGAggctctttcccttcacgTATGGGCTTCAGAACTAC
TTCATTCACGTGGGCAAGGAGACGACGGGGGGCCCGCGCCATTTGTGTAA
TTGCACCGCGTGGTAG
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Synonyms
Publications