rna8319, rna8319 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8319
Unique Name	rna8319
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	926
Alignment location	KK037248.1:362268..363505 +

Link to JBrowse

Properties


Property Name	Value
Product	nmra-like family domain-containing protein 1
Orig transcript id	gnl\|cribi\|Naga_100066g5.10338.mrna
Orig protein id	gnl\|cribi\|Naga_100066g5.10338
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:362268..363505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g5	gene8058	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8319	rna8319-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22381.1	cds8292	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:362268..363505+
coding sequence from alignment at KK037248.1:362268..363505+

mRNA sequence

>rna8319 ID=rna8319|Name=rna8319|organism=Nannochloropsis gaditana|type=mRNA|length=926bp
CCCCCCTTCCCCACCCCTTTCCTCCTCTGCAGCACAGAGTTTACGACGCT
TCTTCAGCTACTTTGCCGGAAAAGTGAGCTGAATGAGAAGTCGAAGAGTT
GCAACAACTCCATCGGGCGTCAGCGGGTGGTGCGCAATATTTTTCTCCCT
CTGCCTCTTCCTCCTCGGCACTCAGGCTTATTTGACACCATTAAGTATGA
TTTCTGCCTCTTCTTCCAAACCTTCGAACCCTTCACGGCTTCGACTCGTC
ACGAACAAAAAATGCCCTTTTGCGCAAAAAGCGTGGATTGCGCTTGAATA
CTTGTATGCTGGGTCCAAGGATTATGATTTGTTGGAGGTAGGACTCTACG
GAGGGAGTGGCAAACCGCAATGGTTTCTGGACATCAGTCCTAAAGGACAG
GTACCAGTGCTATGGCTGCCGTCTGGGCGATGTGTTGTGGAGTCCGACAA
TATTCTTGACCATCTTACAAGCCTTCCAGGTCCAAAGCTTGGCTTTCCCA
ATCCGCTGGTTCCCGCCTCGCCTAAGGCTTACACTCACTTGCGTTCGCTC
CTGAATCCATTCCTGAGGAGCGCTCGCACGGCCATCGAACGAAAAGACAT
AACTAGCCTTTTTTCATCGTTGAATCAGCTCGACAAAGAGATTATTGGGC
CATGCCCTTTCTTGGCGGGCGCGACTTTCTCGGCAGCAGATGCGACCTTG
CTTCCCTTCATGCAACGGTTAGTCGATGGACACGCGGAGTTGGTGGAAGC
AGCAGCGCCACGTCTTCATGAGTGGTATAAAGATGCCGCCAGGGAGCCAT
GTTTTGAAGCAACTTGCGTGTCCGGGTATTGGATGTGGTGGTGATGGTTC
AGCCGTCTTTGATCGGGTGGACGTAATTCAAGGATGACAGGACTCATGGA
AGGAAGCAAACATTGATATGAAAGAC

protein sequence of rna8319

>rna8319-protein ID=rna8319-protein|Name=rna8319|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MPKPTTQDKALEPESRLPLALIIGGTGLQGSGCIQDLIVSNRLRLRTTSR
NARSKAALALTAHGVELYEGSLLDRPFVGRAMAGVHSLFLVTFSDHDGSE
VQQGKNLGDAAIAAGVKRVVFSGGERIGVYAMDNKFQIEEYLRTLNFSHI
VYLHTAFFYENIVTKRGTKRVRIERNPSSGRISRYFFSIPLLEDMAIPFI
SPKDIGRVAATVLLAPHSDIPSEIVLPIAGDVLSPKQFVEKVANLTGVES
SYTQLPLDFFQRLPIPGSELIVEMYKWYHARCPGEGHSRDPESTRSLCPS
VRNADEWLQSGGLRLINDMAFEDGVINQIKDALMGTIIRVYGVYSRIGSG
RDHEGKQ

mRNA from alignment at KK037248.1:362268..363505+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8319 ID=rna8319|Name=rna8319|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp|location=Sequence derived from alignment at KK037248.1:362268..363505+ (Nannochloropsis gaditana)
ATGCCAAAACCGACAACACAAGACAAAGCATTGGAACCAGAATCGCGATT
ACCCCTGGCTCTCATAATCGGAGGCACGGGCTTACAGGGCTCTGGTTGCA
TCCAGGATTTGATTGTCAGTAATCGTCTACGGCTGCGTACTACCTCACGA
AACGCCAGGAGTAAGGTACGTATGATCGACTTTCCTGTCAAAAGGTCATT
TCCTTATGTACTAGCGAACTCTACGGGCATATTTTTTGACAGGCAGCATT
GGCTCTTACCGCCCACGGTGTTGAGCTTTATGAAGGTAGTCTGCTTGACC
GTCCCTTCGTGGGACGGGCCATGGCAGGGGTGCATTCACTATTCCTGGTG
ACATTTTCTGATCACGACGGCTCCGAGGTACAACAAGGCAAGAATTTGGG
GGACGCAGCGATAGCGGCTGGCGTGAAACGCGTCGTGTTCTCAGGTGGAG
AGCGTATTGGGGTGTATGCGATGGATAACAAGTTCCAAATAGAGGAATAC
TTGCGCACTTTGAATTTCTCCCACATAGTTTATCTCCATACTGCCTTTTT
TTACGAGAATATTGTCACCAAAAGGGGCACGAAACGGGTGCGTATTGAGC
GTAATCCCTCATCAGGACGTATTAGCAGATATTTTTTCTCTATTCCTCTG
CTAGAAGATATGGCCATTCCATTCATTTCCCCGAAGGATATCGGAAGGGT
GGCTGCcactgtcctcctcgccccgcATTCGGATATTCCTTCTGAAATTG
TGCTCCCCATAGCCGGGGACGTGCTTTCACCTAAGCAATTTGTTGAAAAG
GTGGCTAACTTGACAGGTGTGGAATCATCCTACACCCAGCTCCCACTTGA
TTTTTTCCAACGTTTGCCTATCCCAGGATCAGAGCTCATGTACGTAATAT
GAATTTTGCAGCGTGCTTGTTACTTCTCTCATTCTCGCTAAGGAAACCGC
TACATCATTTCACTTGCCATACCCAGCGTTGAGATGTACAAATGGTACCA
CGCAAGATGTCCAGGGGAAGGTCACTCACGCGACCCAGAATCTACTCGGT
CCTTGTGCCCTTCTGTGCGAAATGCGGACGAATGGCTGCAAAGCGGTGGT
CTTCGTTTGATCAATGACATGGCCTTTGAGGACGGTGTTATTAATCAGAT
CAAGGACGCTTTGATGGGAACTATTATTCGCGTCTATGGAGTTTATTCAA
GGATAGGTTCAGGGAGAGACCATGAAGGCAAGCAGTAG

Coding sequence (CDS) from alignment at KK037248.1:362268..363505+

>rna8319 ID=rna8319|Name=rna8319|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at KK037248.1:362268..363505+ (Nannochloropsis gaditana)
ATGCCAAAACCGACAACACAAGACAAAGCATTGGAACCAGAATCGCGATT
ACCCCTGGCTCTCATAATCGGAGGCACGGGCTTACAGGGCTCTGGTTGCA
TCCAGGATTTGATTGTCAGTAATCGTCTACGGCTGCGTACTACCTCACGA
AACGCCAGGAGTAAGGCAGCATTGGCTCTTACCGCCCACGGTGTTGAGCT
TTATGAAGGTAGTCTGCTTGACCGTCCCTTCGTGGGACGGGCCATGGCAG
GGGTGCATTCACTATTCCTGGTGACATTTTCTGATCACGACGGCTCCGAG
GTACAACAAGGCAAGAATTTGGGGGACGCAGCGATAGCGGCTGGCGTGAA
ACGCGTCGTGTTCTCAGGTGGAGAGCGTATTGGGGTGTATGCGATGGATA
ACAAGTTCCAAATAGAGGAATACTTGCGCACTTTGAATTTCTCCCACATA
GTTTATCTCCATACTGCCTTTTTTTACGAGAATATTGTCACCAAAAGGGG
CACGAAACGGGTGCGTATTGAGCGTAATCCCTCATCAGGACGTATTAGCA
GATATTTTTTCTCTATTCCTCTGCTAGAAGATATGGCCATTCCATTCATT
TCCCCGAAGGATATCGGAAGGGTGGCTGCcactgtcctcctcgccccgcA
TTCGGATATTCCTTCTGAAATTGTGCTCCCCATAGCCGGGGACGTGCTTT
CACCTAAGCAATTTGTTGAAAAGGTGGCTAACTTGACAGGTGTGGAATCA
TCCTACACCCAGCTCCCACTTGATTTTTTCCAACGTTTGCCTATCCCAGG
ATCAGAGCTCATCGTTGAGATGTACAAATGGTACCACGCAAGATGTCCAG
GGGAAGGTCACTCACGCGACCCAGAATCTACTCGGTCCTTGTGCCCTTCT
GTGCGAAATGCGGACGAATGGCTGCAAAGCGGTGGTCTTCGTTTGATCAA
TGACATGGCCTTTGAGGACGGTGTTATTAATCAGATCAAGGACGCTTTGA
TGGGAACTATTATTCGCGTCTATGGAGTTTATTCAAGGATAGGTTCAGGG
AGAGACCATGAAGGCAAGCAGTAGATGCCAAAACCGACAACACAAGACAA
AGCATTGGAACCAGAATCGCGATTACCCCTGGCTCTCATAATCGGAGGCA
CGGGCTTACAGGGCTCTGGTTGCATCCAGGATTTGATTGTCAGTAATCGT
CTACGGCTGCGTACTACCTCACGAAACGCCAGGAGTAAGGCAGCATTGGC
TCTTACCGCCCACGGTGTTGAGCTTTATGAAGGTAGTCTGCTTGACCGTC
CCTTCGTGGGACGGGCCATGGCAGGGGTGCATTCACTATTCCTGGTGACA
TTTTCTGATCACGACGGCTCCGAGGTACAACAAGGCAAGAATTTGGGGGA
CGCAGCGATAGCGGCTGGCGTGAAACGCGTCGTGTTCTCAGGTGGAGAGC
GTATTGGGGTGTATGCGATGGATAACAAGTTCCAAATAGAGGAATACTTG
CGCACTTTGAATTTCTCCCACATAGTTTATCTCCATACTGCCTTTTTTTA
CGAGAATATTGTCACCAAAAGGGGCACGAAACGGGTGCGTATTGAGCGTA
ATCCCTCATCAGGACGTATTAGCAGATATTTTTTCTCTATTCCTCTGCTA
GAAGATATGGCCATTCCATTCATTTCCCCGAAGGATATCGGAAGGGTGGC
TGCcactgtcctcctcgccccgcATTCGGATATTCCTTCTGAAATTGTGC
TCCCCATAGCCGGGGACGTGCTTTCACCTAAGCAATTTGTTGAAAAGGTG
GCTAACTTGACAGGTGTGGAATCATCCTACACCCAGCTCCCACTTGATTT
TTTCCAACGTTTGCCTATCCCAGGATCAGAGCTCATCGTTGAGATGTACA
AATGGTACCACGCAAGATGTCCAGGGGAAGGTCACTCACGCGACCCAGAA
TCTACTCGGTCCTTGTGCCCTTCTGTGCGAAATGCGGACGAATGGCTGCA
AAGCGGTGGTCTTCGTTTGATCAATGACATGGCCTTTGAGGACGGTGTTA
TTAATCAGATCAAGGACGCTTTGATGGGAACTATTATTCGCGTCTATGGA
GTTTATTCAAGGATAGGTTCAGGGAGAGACCATGAAGGCAAGCAGTAGAT
GCCAAAACCGACAACACAAGACAAAGCATTGGAACCAGAATCGCGATTAC
CCCTGGCTCTCATAATCGGAGGCACGGGCTTACAGGGCTCTGGTTGCATC
CAGGATTTGATTGTCAGTAATCGTCTACGGCTGCGTACTACCTCACGAAA
CGCCAGGAGTAAGGCAGCATTGGCTCTTACCGCCCACGGTGTTGAGCTTT
ATGAAGGTAGTCTGCTTGACCGTCCCTTCGTGGGACGGGCCATGGCAGGG
GTGCATTCACTATTCCTGGTGACATTTTCTGATCACGACGGCTCCGAGGT
ACAACAAGGCAAGAATTTGGGGGACGCAGCGATAGCGGCTGGCGTGAAAC
GCGTCGTGTTCTCAGGTGGAGAGCGTATTGGGGTGTATGCGATGGATAAC
AAGTTCCAAATAGAGGAATACTTGCGCACTTTGAATTTCTCCCACATAGT
TTATCTCCATACTGCCTTTTTTTACGAGAATATTGTCACCAAAAGGGGCA
CGAAACGGGTGCGTATTGAGCGTAATCCCTCATCAGGACGTATTAGCAGA
TATTTTTTCTCTATTCCTCTGCTAGAAGATATGGCCATTCCATTCATTTC
CCCGAAGGATATCGGAAGGGTGGCTGCcactgtcctcctcgccccgcATT
CGGATATTCCTTCTGAAATTGTGCTCCCCATAGCCGGGGACGTGCTTTCA
CCTAAGCAATTTGTTGAAAAGGTGGCTAACTTGACAGGTGTGGAATCATC
CTACACCCAGCTCCCACTTGATTTTTTCCAACGTTTGCCTATCCCAGGAT
CAGAGCTCATCGTTGAGATGTACAAATGGTACCACGCAAGATGTCCAGGG
GAAGGTCACTCACGCGACCCAGAATCTACTCGGTCCTTGTGCCCTTCTGT
GCGAAATGCGGACGAATGGCTGCAAAGCGGTGGTCTTCGTTTGATCAATG
ACATGGCCTTTGAGGACGGTGTTATTAATCAGATCAAGGACGCTTTGATG
GGAACTATTATTCGCGTCTATGGAGTTTATTCAAGGATAGGTTCAGGGAG
AGACCATGAAGGCAAGCAGTAG

Synonyms

Publications