rna8316, rna8316 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8316
Unique Name	rna8316
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1053
Alignment location	KK037248.1:357277..359218 +

Link to JBrowse

Properties


Property Name	Value
Product	protein phosphatase inhibitor
Orig transcript id	gnl\|cribi\|Naga_100066g2.10325.mrna
Orig protein id	gnl\|cribi\|Naga_100066g2.10325
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:357277..359218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100066g2	gene8055	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8316	rna8316-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22368.1	cds8289	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:357277..359218+
coding sequence from alignment at KK037248.1:357277..359218+

mRNA sequence

>rna8316 ID=rna8316|Name=rna8316|organism=Nannochloropsis gaditana|type=mRNA|length=1053bp
ATGCAATTCCTCCCGGCAATTTTCCGGCTGACACTTTCTAAAATCCTTGA
GATGTTCGGGGACGCAGTTCTCAATCCGAAAATAGACGCGCAGGATATCG
AAGAATCCAAGACTATCGTAGGCCTTCATTTGGACAGCATAGCGCCCGAG
CTCCTGGTCAAGGAGGCCATACAAGAGGCGGCGTACCCTGGACAGGCGCT
GGGTAGGCCGCACTTCGTGACGCCTGAGACTCTGCCGGGGCTCAGCGCCG
AGGGACTCAAGGCATTCCAGACGCGGCATTTTACGGCGAGGAGCATGGTG
CTGGCCGCGGCGGGTGTGGAGCACGAAGCATTTGTTGACCTTGCGAAAAA
GCATTTCGGGCGCTTGCCGGCAGGAGAAGGCGCTCACAAGCGCGCACGGG
CCCTTTATCAGGGGGGCGAGAAGCGGATTGAGCAGCCTGACAGCATAGAC
CCATTTACTCGCGTGGCCGTGGGCTTCGAGGTGGCGGGATGGCATGACAA
GGACCTGGTAGCCATGTGCGTGATGCAAATCCTCCTGGGTGGTGGGGACT
CTTTCTCCGCAGGCGGGCCTGGGAAAGGCATGTACTCACGGCTATATAGG
GAACTTTTGAATCGGTACTACTGGGTAGAGGGAGCCGAGGCCTTTGTGAA
CCTTCATAATGAGACGGGGGTCCTGGGGATTGCAGGTGCCTGCGAGGCCG
CTCGTGCCGGTCAGCTCATGCACGAATTCTGTGCGCAAATCTGCAAACTC
GCCTTGACGCCGGTTGATCCTGTAGAATTGTCCCGGGCGAGGAACATGCT
GAAGTGCAATGTCTTGACACAGCTTAAATCTCGAATCATTCTCTTCGAAG
ACATTGGCCGGCAGATGATCACGTACGGGCATCGCGAGGCTCCTGAGGCC
TTGTGTCGCAAGATTGACGAGGTCAAGGCCGAGGATTTGATGAAAATAGC
GCGGCGGGCCATTTCAAAGCCGGTTTCCATCTCAGCGGTTGGAAAAGATT
TGAGGACAGTGCCCAATTATGAGCAGGTACTACAGTGGTTTGCTCAGTCA
TGA

protein sequence of rna8316

>rna8316-protein ID=rna8316-protein|Name=rna8316|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MFYYFGYLALCIVRCVILINGLKSNLLRCYCRTLRLRETDIFICLRRTVM
SASGCRQEDDASRRGVRWDEETIAEHDKLRGTRQKIDEPPTPYHMSYEPA
DAEDDNMKLDGTGEGEDDKPPGNKGSPVTRNRVSRSNSVSSAPGTPSQIA
KKSQPGYLAENWQELTTALEQAAQNREALRQARGSSSAVSDAGGKGDGQS
PSMSRSGSGSSQRSGKDRSASFSSDSGHDRASDDKLMKSPQHAAFAKKRM
SHYDEYKRLQEWRKAHEGEEEKDEEEEEEKGKGHEGTGKGKNQAEAEKTA
EK

mRNA from alignment at KK037248.1:357277..359218+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8316 ID=rna8316|Name=rna8316|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp|location=Sequence derived from alignment at KK037248.1:357277..359218+ (Nannochloropsis gaditana)
CAGGGTACGCCGCCTCTTGTATGGCCTCCTTGACCAGGAGCTCGGGCGCT
ATGCTGTCCAAATGAAGGCCTACGATAGTCTTGGATTCTTCGATATCCTG
CGCGTCTGAGGGGGTACCAAGGAAAGCCAGAAGGATCAAAAACAGGAAAC
GAAATGAGTGCTTTCTTTATGCAGCGTAGGTTTCCTTGAACATGAAttct
cgcccacgcccgtcGTAACTCCAATGCCCTCTACTTCCGTGTCGTGACCC
ACCTATTTTCGGATTGAGAACTGCGTCCCCGAACATCTCAAGGATTTTAG
AAAGTGTCAGCCGGAAAATTGCCCTGTCCAATTTAAGTTATATTTTCTGG
GACGGGGCTGCAATTGCCGAGAAGAGACCGGCAATTGAAGCACGCCTGAG
ATCGAGATGACTTGCTTGCTATTTCGCACGACTTGCAAAAGGAAACCGAA
CGGGAGGAATTGCATGCGATGTTTTATTACTTCGGTTATTTAGCGCTTTG
TATTGTGCGCTGTGTAATACTGATTAATGGGTTAAAATCAAACTTATTAA
GATGCTACTGTCGTACGCTCCGTCTTCGAGAAACAGATATATTCATTTGT
CTCCGTCGGACAGTCATGAGTGCCTCCGGATGCCGCCAAGAAGATGATGC
GTCAAGAAGAGGGTAAGTGCCCCGTCGTGGGTCACGGGGATTCTGTACAT
GATTCTGGTTCTTGCGCATTTGAAAGCACATGGGGATGTCAAATACCCAc
accgcgtcctcgcccaccgtCCTCCGCAATACTATCGTCCTTGTCTTTTC
AGGGTTAGATGGGATGAGGAGACAATCGCGGAGCACGACAAGCTGCGGGG
AACGCGACAAAAAGTAggccatttccctcccattgAACCCCATCGACCTT
CCACTTCGAGAATCActgatcctccctctctcaccctTCCCGGGCCATCT
CTCCCTGTCCTGATCCCGTCCGTCGCCGACATAGATCGATGAACCCCCCA
CGCCCTACCACATGTCCTACGAACCAGCCGACGCCGAGGATGACAACATG
AAGTTGGATGGGACTGGAGAGGGCGAAGATGACAAGCCCCCCGGAAATAA
GGGCAGTCCTGTCACCCGAAATCGGGTCTCCCGCTCGAACTCCGTCTCCT
CAGCACCTGGAACGCCCAGTCAAATTGCCAAGAAAAGTCAACCTGGCTAC
CTAGCGGAAAACTGGCAGGAACTGACGACAGCACTGGAACAAGCTGCCCA
AAATCGAGAGGCTCTTCGACAAGCGAGGGGTTCATCGTCGGCAGTGTCCG
atgcaggagggaaaggggatggaCAGTCTCCGTCCATGTCTCGAAGCggg
agcggcagcagccagCGCTCAGGCAAAGACAGATCGGCAAGTTTTTCCTC
GGATTCAGGACATGACCGTGCTTCAGACGACAAGCTGATGAAGAGCCCTC
AGCACGCGGCCTTTGCCAAAAAGCGAATGAGTCACTACGACGAATACAAA
CGCTTGCAAGAATGGCGGAAGGCGCatgagggcgaggaagaaaaagacga
ggaagaggaagaagagaaaggaaaaggacacgAAGGTACTGGTAAGGGCA
AAAATCAGGCAGAAGCGGAGAAGACTGCCGAGAAATGACCTTCAAAAGGA
GTTCAGCTCTGATTGAGACTCAAAAGAGTCGAGAGAAAGCGAGACTTTGA
AAAATGTTAATACGTTGATGCCTAGAACTAAGGGCCGATTTGAAAGTTTT
GGTCTAGAGAGTTCAGGCAAAAAGCTTTAGCCACATTTTGTGGCCACATT
TCGACAAAAATGAATATCATTGGATTTACGATCTACAGCTGTATTCTTGA
TTCTATCAAAATTTTCTTCCGAAGGGTTTGGTGATATGCCCACCAGTCAT
GTGGGTTGTGTGCCCAGAGAGACGTGTACCGCTACGCAAGGT

Coding sequence (CDS) from alignment at KK037248.1:357277..359218+

>rna8316 ID=rna8316|Name=rna8316|organism=Nannochloropsis gaditana|type=CDS|length=2727bp|location=Sequence derived from alignment at KK037248.1:357277..359218+ (Nannochloropsis gaditana)
ATGTTTTATTACTTCGGTTATTTAGCGCTTTGTATTGTGCGCTGTGTAAT
ACTGATTAATGGGTTAAAATCAAACTTATTAAGATGCTACTGTCGTACGC
TCCGTCTTCGAGAAACAGATATATTCATTTGTCTCCGTCGGACAGTCATG
AGTGCCTCCGGATGCCGCCAAGAAGATGATGCGTCAAGAAGAGGGGTTAG
ATGGGATGAGGAGACAATCGCGGAGCACGACAAGCTGCGGGGAACGCGAC
AAAAAATCGATGAACCCCCCACGCCCTACCACATGTCCTACGAACCAGCC
GACGCCGAGGATGACAACATGAAGTTGGATGGGACTGGAGAGGGCGAAGA
TGACAAGCCCCCCGGAAATAAGGGCAGTCCTGTCACCCGAAATCGGGTCT
CCCGCTCGAACTCCGTCTCCTCAGCACCTGGAACGCCCAGTCAAATTGCC
AAGAAAAGTCAACCTGGCTACCTAGCGGAAAACTGGCAGGAACTGACGAC
AGCACTGGAACAAGCTGCCCAAAATCGAGAGGCTCTTCGACAAGCGAGGG
GTTCATCGTCGGCAGTGTCCGatgcaggagggaaaggggatggaCAGTCT
CCGTCCATGTCTCGAAGCgggagcggcagcagccagCGCTCAGGCAAAGA
CAGATCGGCAAGTTTTTCCTCGGATTCAGGACATGACCGTGCTTCAGACG
ACAAGCTGATGAAGAGCCCTCAGCACGCGGCCTTTGCCAAAAAGCGAATG
AGTCACTACGACGAATACAAACGCTTGCAAGAATGGCGGAAGGCGCatga
gggcgaggaagaaaaagacgaggaagaggaagaagagaaaggaaaaggac
acgAAGGTACTGGTAAGGGCAAAAATCAGGCAGAAGCGGAGAAGACTGCC
GAGAAATGAATGTTTTATTACTTCGGTTATTTAGCGCTTTGTATTGTGCG
CTGTGTAATACTGATTAATGGGTTAAAATCAAACTTATTAAGATGCTACT
GTCGTACGCTCCGTCTTCGAGAAACAGATATATTCATTTGTCTCCGTCGG
ACAGTCATGAGTGCCTCCGGATGCCGCCAAGAAGATGATGCGTCAAGAAG
AGGGGTTAGATGGGATGAGGAGACAATCGCGGAGCACGACAAGCTGCGGG
GAACGCGACAAAAAATCGATGAACCCCCCACGCCCTACCACATGTCCTAC
GAACCAGCCGACGCCGAGGATGACAACATGAAGTTGGATGGGACTGGAGA
GGGCGAAGATGACAAGCCCCCCGGAAATAAGGGCAGTCCTGTCACCCGAA
ATCGGGTCTCCCGCTCGAACTCCGTCTCCTCAGCACCTGGAACGCCCAGT
CAAATTGCCAAGAAAAGTCAACCTGGCTACCTAGCGGAAAACTGGCAGGA
ACTGACGACAGCACTGGAACAAGCTGCCCAAAATCGAGAGGCTCTTCGAC
AAGCGAGGGGTTCATCGTCGGCAGTGTCCGatgcaggagggaaaggggat
ggaCAGTCTCCGTCCATGTCTCGAAGCgggagcggcagcagccagCGCTC
AGGCAAAGACAGATCGGCAAGTTTTTCCTCGGATTCAGGACATGACCGTG
CTTCAGACGACAAGCTGATGAAGAGCCCTCAGCACGCGGCCTTTGCCAAA
AAGCGAATGAGTCACTACGACGAATACAAACGCTTGCAAGAATGGCGGAA
GGCGCatgagggcgaggaagaaaaagacgaggaagaggaagaagagaaag
gaaaaggacacgAAGGTACTGGTAAGGGCAAAAATCAGGCAGAAGCGGAG
AAGACTGCCGAGAAATGAATGTTTTATTACTTCGGTTATTTAGCGCTTTG
TATTGTGCGCTGTGTAATACTGATTAATGGGTTAAAATCAAACTTATTAA
GATGCTACTGTCGTACGCTCCGTCTTCGAGAAACAGATATATTCATTTGT
CTCCGTCGGACAGTCATGAGTGCCTCCGGATGCCGCCAAGAAGATGATGC
GTCAAGAAGAGGGGTTAGATGGGATGAGGAGACAATCGCGGAGCACGACA
AGCTGCGGGGAACGCGACAAAAAATCGATGAACCCCCCACGCCCTACCAC
ATGTCCTACGAACCAGCCGACGCCGAGGATGACAACATGAAGTTGGATGG
GACTGGAGAGGGCGAAGATGACAAGCCCCCCGGAAATAAGGGCAGTCCTG
TCACCCGAAATCGGGTCTCCCGCTCGAACTCCGTCTCCTCAGCACCTGGA
ACGCCCAGTCAAATTGCCAAGAAAAGTCAACCTGGCTACCTAGCGGAAAA
CTGGCAGGAACTGACGACAGCACTGGAACAAGCTGCCCAAAATCGAGAGG
CTCTTCGACAAGCGAGGGGTTCATCGTCGGCAGTGTCCGatgcaggaggg
aaaggggatggaCAGTCTCCGTCCATGTCTCGAAGCgggagcggcagcag
ccagCGCTCAGGCAAAGACAGATCGGCAAGTTTTTCCTCGGATTCAGGAC
ATGACCGTGCTTCAGACGACAAGCTGATGAAGAGCCCTCAGCACGCGGCC
TTTGCCAAAAAGCGAATGAGTCACTACGACGAATACAAACGCTTGCAAGA
ATGGCGGAAGGCGCatgagggcgaggaagaaaaagacgaggaagaggaag
aagagaaaggaaaaggacacgAAGGTACTGGTAAGGGCAAAAATCAGGCA
GAAGCGGAGAAGACTGCCGAGAAATGA

Synonyms

Publications