rna8315, rna8315 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8315
Unique Name	rna8315
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:356317..357741 -

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Properties


Property Name	Value
Product	Peptidase M16
Orig transcript id	gnl\|cribi\|Naga_100066g1.10320.mrna
Orig protein id	gnl\|cribi\|Naga_100066g1.10320
Gene	MPP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:356317..357741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MPP	gene8054	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8315	rna8315-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22363.1	cds8288	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at KK037248.1:356317..357741-
coding sequence from alignment at KK037248.1:356317..357741-

protein sequence of rna8315

>rna8315-protein ID=rna8315-protein|Name=rna8315|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MQFLPAIFRLTLSKILEMFGDAVLNPKIDAQDIEESKTIVGLHLDSIAPE
LLVKEAIQEAAYPGQALGRPHFVTPETLPGLSAEGLKAFQTRHFTARSMV
LAAAGVEHEAFVDLAKKHFGRLPAGEGAHKRARALYQGGEKRIEQPDSID
PFTRVAVGFEVAGWHDKDLVAMCVMQILLGGGDSFSAGGPGKGMYSRLYR
ELLNRYYWVEGAEAFVNLHNETGVLGIAGACEAARAGQLMHEFCAQICKL
ALTPVDPVELSRARNMLKCNVLTQLKSRIILFEDIGRQMITYGHREAPEA
LCRKIDEVKAEDLMKIARRAISKPVSISAVGKDLRTVPNYEQVLQWFAQS

mRNA from alignment at KK037248.1:356317..357741-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8315 ID=rna8315|Name=rna8315|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp|location=Sequence derived from alignment at KK037248.1:356317..357741- (Nannochloropsis gaditana)
ATGCAATTCCTCCCGTTCGGTTTCCTTTTGCAAGTCGTGCGAAATAGCAA
GCAAGTCATCTCGATCTCAGGCGTGCTTCAATTGCCGGTCTCTTCTCGGC
AATTGCAGCCCCGTCCCAGAAAATATAACTTAAATTGGACAGGGCAATTT
TCCGGCTGACACTTTCTAAAATCCTTGAGATGTTCGGGGACGCAGTTCTC
AATCCGAAAATAGGTGGGTCACGACACGGAAGTAGAGGGCATTGGAGTTA
CGACGGGCGTGGGCGAGAATTCATGTTCAAGGAAACCTACGCTGCATAAA
GAAAGCACTCATTTCGTTTCCTGTTTTTGATCCTTCTGGCTTTCCTTGGT
ACCCCCTCAGACGCGCAGGATATCGAAGAATCCAAGACTATCGTAGGCCT
TCATTTGGACAGCATAGCGCCCGAGCTCCTGGTCAAGGAGGCCATACAAG
AGGCGGCGTACCCTGGACAGGCGCTGGGTAGGCCGCACTTCGTGACGCCT
GAGACTCTGCCGGGGTAAGTTGGCGGACGTGGGGATTGGGAAGAAGCTAA
GTGTGGGTTGGGGATACACGACAGAAGTACATCTCACAGTGTTGCTCCAA
TATCTCCTTAGGCTCAGCGCCGAGGGACTCAAGGCATTCCAGACGCGGCA
TTTTACGGCGAGGAGCATGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAG
CATTTGTTGACCTTGCGAAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAA
GGCGCTCACAAGCGCGCACGGGCCCTTTATCAGGGGGGCGAGAAGCGGAT
TGAGCAGCCTGACAGCATAGACCCATTTACTCGCGTGGCCGTGGGCTTCG
AGGTGGCGGGATGGCATGACAAGGACCTGGTAGCCATGTGCGTGATGCAA
ATCCTCCTGGGTGGTGGGGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGG
CATGTACTCACGGCTATATAGGGAACTTTTGAATCGGTACTACTGGGTAG
AGGGAGCCGAGGCCTTTGTGAACCTTCATAATGAGACGGGGGTCCTGGGG
ATTGCAGGTGCCTGCGAGGCCGCTCGTGCCGGTCAGCTCATGCACGAATT
CTGTGCGCAAATCTGCAAACTCGCCTTGACGCCGGTTGATCCTGTAGAAT
TGTCCCGGGCGAGGAACATGCTGAAGTGCAATGTCTTGACACAGCTTAAA
TCTCGAATCATTCTCTTCGAAGACATTGGCCGGCAGATGATCACGTACGG
GCATCGCGAGGCTCCTGAGGCCTTGTGTCGCAAGATTGACGAGGTCAAGG
CCGAGGATTTGATGAAAATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCC
ATCTCAGCGGTTGGAAAAGATTTGAGGACAGTGCCCAATTATGAGCAGGT
ACTACAGTGGTTTGCTCAGTCATGA

Coding sequence (CDS) from alignment at KK037248.1:356317..357741-

>rna8315 ID=rna8315|Name=rna8315|organism=Nannochloropsis gaditana|type=CDS|length=4212bp|location=Sequence derived from alignment at KK037248.1:356317..357741- (Nannochloropsis gaditana)
GCTCAGCGCCGAGGGACTCAAGGCATTCCAGACGCGGCATTTTACGGCGA
GGAGCATGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAGCATTTGTTGAC
CTTGCGAAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAAGGCGCTCACAA
GCGCGCACGGGCCCTTTATCAGGGGGGCGAGAAGCGGATTGAGCAGCCTG
ACAGCATAGACCCATTTACTCGCGTGGCCGTGGGCTTCGAGGTGGCGGGA
TGGCATGACAAGGACCTGGTAGCCATGTGCGTGATGCAAATCCTCCTGGG
TGGTGGGGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGGCATGTACTCAC
GGCTATATAGGGAACTTTTGAATCGGTACTACTGGGTAGAGGGAGCCGAG
GCCTTTGTGAACCTTCATAATGAGACGGGGGTCCTGGGGATTGCAGGTGC
CTGCGAGGCCGCTCGTGCCGGTCAGCTCATGCACGAATTCTGTGCGCAAA
TCTGCAAACTCGCCTTGACGCCGGTTGATCCTGTAGAATTGTCCCGGGCG
AGGAACATGCTGAAGTGCAATGTCTTGACACAGCTTAAATCTCGAATCAT
TCTCTTCGAAGACATTGGCCGGCAGATGATCACGTACGGGCATCGCGAGG
CTCCTGAGGCCTTGTGTCGCAAGATTGACGAGGTCAAGGCCGAGGATTTG
ATGAAAATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCCATCTCAGCGGT
TGGAAAAGATTTGAGGACAGTGCCCAATTATGAGCAGGTACTACAGTGGT
TTGCTCAGTCATGAACGCGCAGGATATCGAAGAATCCAAGACTATCGTAG
GCCTTCATTTGGACAGCATAGCGCCCGAGCTCCTGGTCAAGGAGGCCATA
CAAGAGGCGGCGTACCCTGGACAGGCGCTGGGTAGGCCGCACTTCGTGAC
GCCTGAGACTCTGCCGGGGGCAATTTTCCGGCTGACACTTTCTAAAATCC
TTGAGATGTTCGGGGACGCAGTTCTCAATCCGAAAATAGATGCAATTCCT
CCCGCTCAGCGCCGAGGGACTCAAGGCATTCCAGACGCGGCATTTTACGG
CGAGGAGCATGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAGCATTTGTT
GACCTTGCGAAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAAGGCGCTCA
CAAGCGCGCACGGGCCCTTTATCAGGGGGGCGAGAAGCGGATTGAGCAGC
CTGACAGCATAGACCCATTTACTCGCGTGGCCGTGGGCTTCGAGGTGGCG
GGATGGCATGACAAGGACCTGGTAGCCATGTGCGTGATGCAAATCCTCCT
GGGTGGTGGGGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGGCATGTACT
CACGGCTATATAGGGAACTTTTGAATCGGTACTACTGGGTAGAGGGAGCC
GAGGCCTTTGTGAACCTTCATAATGAGACGGGGGTCCTGGGGATTGCAGG
TGCCTGCGAGGCCGCTCGTGCCGGTCAGCTCATGCACGAATTCTGTGCGC
AAATCTGCAAACTCGCCTTGACGCCGGTTGATCCTGTAGAATTGTCCCGG
GCGAGGAACATGCTGAAGTGCAATGTCTTGACACAGCTTAAATCTCGAAT
CATTCTCTTCGAAGACATTGGCCGGCAGATGATCACGTACGGGCATCGCG
AGGCTCCTGAGGCCTTGTGTCGCAAGATTGACGAGGTCAAGGCCGAGGAT
TTGATGAAAATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCCATCTCAGC
GGTTGGAAAAGATTTGAGGACAGTGCCCAATTATGAGCAGGTACTACAGT
GGTTTGCTCAGTCATGAACGCGCAGGATATCGAAGAATCCAAGACTATCG
TAGGCCTTCATTTGGACAGCATAGCGCCCGAGCTCCTGGTCAAGGAGGCC
ATACAAGAGGCGGCGTACCCTGGACAGGCGCTGGGTAGGCCGCACTTCGT
GACGCCTGAGACTCTGCCGGGGGCAATTTTCCGGCTGACACTTTCTAAAA
TCCTTGAGATGTTCGGGGACGCAGTTCTCAATCCGAAAATAGATGCAATT
CCTCCCGCTCAGCGCCGAGGGACTCAAGGCATTCCAGACGCGGCATTTTA
CGGCGAGGAGCATGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAGCATTT
GTTGACCTTGCGAAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAAGGCGC
TCACAAGCGCGCACGGGCCCTTTATCAGGGGGGCGAGAAGCGGATTGAGC
AGCCTGACAGCATAGACCCATTTACTCGCGTGGCCGTGGGCTTCGAGGTG
GCGGGATGGCATGACAAGGACCTGGTAGCCATGTGCGTGATGCAAATCCT
CCTGGGTGGTGGGGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGGCATGT
ACTCACGGCTATATAGGGAACTTTTGAATCGGTACTACTGGGTAGAGGGA
GCCGAGGCCTTTGTGAACCTTCATAATGAGACGGGGGTCCTGGGGATTGC
AGGTGCCTGCGAGGCCGCTCGTGCCGGTCAGCTCATGCACGAATTCTGTG
CGCAAATCTGCAAACTCGCCTTGACGCCGGTTGATCCTGTAGAATTGTCC
CGGGCGAGGAACATGCTGAAGTGCAATGTCTTGACACAGCTTAAATCTCG
AATCATTCTCTTCGAAGACATTGGCCGGCAGATGATCACGTACGGGCATC
GCGAGGCTCCTGAGGCCTTGTGTCGCAAGATTGACGAGGTCAAGGCCGAG
GATTTGATGAAAATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCCATCTC
AGCGGTTGGAAAAGATTTGAGGACAGTGCCCAATTATGAGCAGGTACTAC
AGTGGTTTGCTCAGTCATGAACGCGCAGGATATCGAAGAATCCAAGACTA
TCGTAGGCCTTCATTTGGACAGCATAGCGCCCGAGCTCCTGGTCAAGGAG
GCCATACAAGAGGCGGCGTACCCTGGACAGGCGCTGGGTAGGCCGCACTT
CGTGACGCCTGAGACTCTGCCGGGGGCAATTTTCCGGCTGACACTTTCTA
AAATCCTTGAGATGTTCGGGGACGCAGTTCTCAATCCGAAAATAGATGCA
ATTCCTCCCGCTCAGCGCCGAGGGACTCAAGGCATTCCAGACGCGGCATT
TTACGGCGAGGAGCATGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAGCA
TTTGTTGACCTTGCGAAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAAGG
CGCTCACAAGCGCGCACGGGCCCTTTATCAGGGGGGCGAGAAGCGGATTG
AGCAGCCTGACAGCATAGACCCATTTACTCGCGTGGCCGTGGGCTTCGAG
GTGGCGGGATGGCATGACAAGGACCTGGTAGCCATGTGCGTGATGCAAAT
CCTCCTGGGTGGTGGGGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGGCA
TGTACTCACGGCTATATAGGGAACTTTTGAATCGGTACTACTGGGTAGAG
GGAGCCGAGGCCTTTGTGAACCTTCATAATGAGACGGGGGTCCTGGGGAT
TGCAGGTGCCTGCGAGGCCGCTCGTGCCGGTCAGCTCATGCACGAATTCT
GTGCGCAAATCTGCAAACTCGCCTTGACGCCGGTTGATCCTGTAGAATTG
TCCCGGGCGAGGAACATGCTGAAGTGCAATGTCTTGACACAGCTTAAATC
TCGAATCATTCTCTTCGAAGACATTGGCCGGCAGATGATCACGTACGGGC
ATCGCGAGGCTCCTGAGGCCTTGTGTCGCAAGATTGACGAGGTCAAGGCC
GAGGATTTGATGAAAATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCCAT
CTCAGCGGTTGGAAAAGATTTGAGGACAGTGCCCAATTATGAGCAGGTAC
TACAGTGGTTTGCTCAGTCATGAACGCGCAGGATATCGAAGAATCCAAGA
CTATCGTAGGCCTTCATTTGGACAGCATAGCGCCCGAGCTCCTGGTCAAG
GAGGCCATACAAGAGGCGGCGTACCCTGGACAGGCGCTGGGTAGGCCGCA
CTTCGTGACGCCTGAGACTCTGCCGGGGGCAATTTTCCGGCTGACACTTT
CTAAAATCCTTGAGATGTTCGGGGACGCAGTTCTCAATCCGAAAATAGAT
GCAATTCCTCCC

Synonyms

Publications