rna8305, rna8305 (mRNA) Nannochloropsis gaditana

Overview
Namerna8305
Unique Namerna8305
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1059
Alignment locationKK037248.1:328471..329765 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100067g24.2681.mrna
Orig protein idgnl|cribi|Naga_100067g24.2681
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:328471..329765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100067g24gene8044Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22393.1cds8281Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8305rna8305-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8305 ID=rna8305|Name=rna8305|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
GGAGTATAGTCTTTCCCTCGGGGAAGAAGGTGTTGTCATAGCTTTACCTA
TTTGGTATTTCTCTGAGCCTTCCTTTCCAATGTGGGTACTGTCAGTCCAT
ATGGTTATTGCCATATCTATGGGACGGATTGGCAGAAGAGAGTGGGACTC
CTACCAACGGGTCTGTGTGACCCGGATCTGCTTGTAAAACACGCGCACGC
ACGAAGGAATCATGAACCTAGAGACATTCTGTACAGCTCTTGTCTTTGTG
TCTCTGAGCTTATAATGTGAGCTCACCCGGAATTGTCACATTACTTCCCC
GAGGTCGTTCCCTCACCCTCGTAGAGCTCGCTGCTAACTTTGCTCTTAGG
GGCCACCCGACCGCTTTGTACATGTGTTCCTCAACCCTCATGTCGAGCAG
CAACTTTGCTTTGAAACCTCAACTACATCCTGTGCCACCCTTCAGACCGT
ATGCGAGTTTTAGCGTGGACAAACGCTGCCTTGAACGTTGCACTTTCGGT
CGAGCTTCGCTCAGGCTCGTCTCCATCAAGAATTTTTCCCACGGGCGCTC
TTGGTTACGTCACACGACCCAGCTGCTTGGAGGGTCTGGTCATGTCTACG
GAAGGTGGCTCAAGCGGTACCAATGATGATGGGCGAAGAAGAGCGAGTTT
TTCTTCCGCAGAACATTTACCTGCATCATCAATCACTACAAGTGCTCATG
GCATGGAAGATCAACACAAGCCTGCTGAAGAGAAAGGAGCCCTACCGCCG
CCTGTTGTGCCAGAAAAGGAAATGAAGAAGATGCGAAAAAAAGCGGCCAA
GGCTGCCAAGCGTGAAAAACGTGAAAGTAATAAATTATCTCTCAAGCCTT
GTGTCATCTGCAACCGGGACCAAGACCTGCTGATCCGTTGTCAGGTTGAT
TCTTCACTGGAATGGAAGATGGTGTGCGGAAAATGTTGGAGGGAAGTTAG
CGGGGGAGTCGTAGACGGTGATGCTGCGCACCCACACTATCGATACGGTG
GCCTATGGAAGGCTCGATAGTTGCTAAGGGGCTTGGGTAAAGTAAAAATG
ACGGGATGA
back to top

protein sequence of rna8305

>rna8305-protein ID=rna8305-protein|Name=rna8305|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MKGFGGKQILCGYKDPLRFDKPCPYHTRHIDNPYSLLARHTNAMHVGRPV
KMRRETEDMSVRSRRSSSRTRAWGEAKEADCVTDAGRGNKVNSNDNNDHD
VEEDERENGDEEEQEENYSGRKRV
back to top

mRNA from alignment at KK037248.1:328471..329765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8305 ID=rna8305|Name=rna8305|organism=Nannochloropsis gaditana|type=mRNA|length=1295bp|location=Sequence derived from alignment at KK037248.1:328471..329765- (Nannochloropsis gaditana)
ACATTTAACCAGATTGATAAACCACCCTGTGTGGCAATGGTGGTCCCCGA
TGGCACAAAAAGGCGGTGGTTGAGTCCCAACTACAAAGCGGCGAATAAAC
CTTCAAGTTCAAGTCGAAGGCGACTTGCAGTCCCAGTTGGGTGTTGGGAC
CCCAACACCGTGTCGGTGTTCCTCGACAGGTGCTACCTCTTGGCTTGTAG
GCCACTGCATGCGCGCTACGTGACTATACCGAAGGAATCACCAGGAAGGC
ACTTCGGGATTCCGGGACCATAGGAAAATGCTTCCGCGCACCACGAGACT
AACGATTCCTCTTTCTCTTATTACTGGTACAGGGACCATTCCCTACTCAG
CCTGAGAGCGAGCAAGATTCAGTGGTGGGAAATCGGATTTAACTCGCATG
AAAGGCTTTGGGGGAAAGCAAATTCTGTGTGGCTACAAGGACCCGCTCCG
TTTTGATAAACCATGTCCATATCACACGCGTCATATTGATAATCCCTATA
GCCTTTTGGCGCGTCACACCAACGCTATGCACGTCGGCAGACCTGTCAAA
ATGAGGCGTGAAACGGAGGACATGTCTGTCAGATCACGCCGCAGCAGTTC
CCGAACACGCGCTTGGGGCGAGGCGAAGGAAGCAGATTGCGTCACAGATG
CAGGACGTGGCAACAAAGTCAACAGTAATGATAACAATGATCACGACGTA
GAAGAGGATGAACGAGAGAATGGGGACGAAGAGGAGCAAGAAGAAAATTA
TTCGGGAAGGAAGCGGGTTTGAAGAAGGTTAATCGCTACAGTGAGCTCAA
GTTTGGCAAGTATGTGGGAAACATGGGTACAGGAACCACCTTGCGTTGTG
CTCCCACTTACGGGGAAAAAGATCAGCTGTGGTGGGATTTTATCGTCTAA
GCCACGTCTACAAAAGGCACGCCGTGATCGAAAAGCGAATTGTTATTTTG
GCAGGCTCGAGAAGATTCCAACGACAGAAGGCGCGGAATTGACCAAGGTG
AGCCGCGCAAAAAGTTGTTGATGCGCCACTTCACCCTTGTGAAAGCTCCC
CAGGAGCGAGATGGCCAAGGTTGGCAGTTGCCACGTGACGTCCTGGCTTG
TCACACCTTCATAGCGGAGGAAGAGTGTACCTGGGATGTAATCGACAGGG
AGTAGGTGTGTAGTACAGCATTTGTCTTGCCCATCGTAGAGGATAAAGCC
AAGTCCCTGCGACGCATCCCGCTGGATAAGGAAGGTCCTTTACAAGATGG
GAAGGTATCTGGTGGTCCCCACAAGCTATAGCTCCACGCAATCTT
back to top

Coding sequence (CDS) from alignment at KK037248.1:328471..329765-

>rna8305 ID=rna8305|Name=rna8305|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at KK037248.1:328471..329765- (Nannochloropsis gaditana)
ATGAAAGGCTTTGGGGGAAAGCAAATTCTGTGTGGCTACAAGGACCCGCT
CCGTTTTGATAAACCATGTCCATATCACACGCGTCATATTGATAATCCCT
ATAGCCTTTTGGCGCGTCACACCAACGCTATGCACGTCGGCAGACCTGTC
AAAATGAGGCGTGAAACGGAGGACATGTCTGTCAGATCACGCCGCAGCAG
TTCCCGAACACGCGCTTGGGGCGAGGCGAAGGAAGCAGATTGCGTCACAG
ATGCAGGACGTGGCAACAAAGTCAACAGTAATGATAACAATGATCACGAC
GTAGAAGAGGATGAACGAGAGAATGGGGACGAAGAGGAGCAAGAAGAAAA
TTATTCGGGAAGGAAGCGGGTTTGA
back to top
Synonyms
Publications