rna8303, rna8303 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8303
Unique Name	rna8303
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3220
Alignment location	KK037248.1:324838..326712 +

Link to JBrowse

Properties


Property Name	Value
Product	wd-40 repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100067g21.2691.mrna
Orig protein id	gnl\|cribi\|Naga_100067g21.2691
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:324838..326712 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g21	gene8042	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8303	rna8303-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22403.1	cds8279	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:324838..326712+
coding sequence from alignment at KK037248.1:324838..326712+

mRNA sequence

>rna8303 ID=rna8303|Name=rna8303|organism=Nannochloropsis gaditana|type=mRNA|length=3220bp
TGTAGCGCGCACCCACCACATAACAACCGCGTTGGTGTATAACAACCTCT
CCGCGAGGGCAATCCATTACCAACCGAAATTGGCTTTTGTATCGTTCCTA
AGAAAGTGACATCCTCTCTCCCGCGAAGCAAGAACAAGGCGAGTGTCTCC
AGCCTCCTCCATTCCCTTGCCCATATACTTACGTCCCTGGAATTACCGGG
ATATCCCAGCTCTGGTACGGGTGACGCATTGGTGTGGTGCTGATGATTCT
GAACTATACCGTTGAGCCGTCAAGGATAGGTCTGAACGAGATGATTTGGT
CGAGCCCTTACTAAAGAGGGCCGGTCACTAGTATCTTCCAACACGTTTAA
CGCCTGTCCTTCATTTTTCCCATGTTTCTTACGTTTATGAGATAGATGGT
TTCGGCGCTCCATAATCCGCCTGAAACACCCGATAAAAAGGCGGACGGTG
CGATTGCAGCAGCCGTAGGGGCTGGAGGGTTGTCATTTCATCCCGCAGCA
GGTCAGGAAGGCACGGCGGGTCGAGCTGCGATGACGCCGAGAGGCGAGGA
GGAGGATATCGAAGGAAGGCAGCTAATGGCGAAAAGGAGGGATCAGCATC
TATTGTATATTCATAGGTGCCGCTTTCTCGACTGGGAGCCTCGCGCTATC
GTATGCATGGCCGCGTGCGCATCAGGACGGATGCTTGCTGTGGCCCGGGA
AAGCGGGGAAGTTGAAATTCGCCTGGTCGATGAAAAGTTTCGAGTGGCAG
GTGTTGTGCCCGTACCTGGAGGAAACGGGCTCATTCGCAGCATGACATGG
TCGCGGCAGGTCTCTGAATCCCAGGGGCGCCTTTTCGTCGGGAGCTTGGA
TACGTCGGTATTCGAGATCGACGTGCCAGGCCTGCGGGTGCGGCGCCGGC
AGGACTCCTACGGCGGCCCCGTCTGGTGCCTGGCGGCGGACCCTCACCGT
GACCTCCTGGCCGTTGGCTGTGAAGACGGCTCGGTCAAGCTGTTCAGTAC
CGCGGATCAGGGCTTCGAGTTCAGCCGGGCCTTGCCGACCGTGAACTCTC
GGATCCTCTCCATGGCCTGGCAAGCCCCGCCGTCTCCCAGGGACTCCCCC
AGCCTCTTTGTTGGCGCTGTGGACGGGACGATTCGCCACCTGGATGCCCG
GACAGGCCACAGCGCGTACCGGATGACGGTGGAGGCCAAGAACAGTGCGC
ACCCGCCCCTGGTCTGGTCCCTGCTGGCACTTTCCGACGGGACCCTCGTC
AGCGGGGACTCGCTGGGCGCCGTCCATTTCTGGGACGGGGCTATGGGCGC
GCTCAAGCAGTCGTTCTGGGTCCACGAGGCCGACGTGCTGGCCCTGGCGG
CGAGCGCGGCCGGCGACACTGTCTTCGCCTCGGGCGTGGACAGTAAGCTG
GTCTGCCTCAGGCGTCCTTCCCAGGCCGGGGCCCGAGAGCCTCCAGGGGC
GCCAGAGGACGAAGCCTGGGTCCTGGCCGCCTCTAACCGGGCCCACAGCC
ACGACCTTCGCGCCCTGGCGGTGGTCGAGAGGTCGGGGGGGAGGGGAGGC
GAGGGGCGCCGGTCCTCTCTCCTGGTCTCGGGGGGGGTGGACACCAAGCT
TTGCACGTACTCGGTCGCCAGTTTCGCGCACAACCGGCCCCGGTACATTG
CCCCCTACCCTTACTACCCCGTGGCGAGCGTGGCCTCTGCCCGTGGGCGC
CGCCTTCTCATGATGCAGCACAGCCGAAAGCTCCAACTCTGGGGCCTGGG
AGGGTTTCAGGAGGAGACGGCACTGTGCCTACAACACGAGCCATCTCCCC
TACTTGAAATCCAAGCGGTCAAGGGGCAGCTGATCGTGTCGTCGTCGCTC
TCCCCCGACGGCCGCTTTCTGGCCTACGCGACGACGGGAACACTGCGGGT
CCTTGCCTTGGAGGTGGGGGAGAGCGAGGGGGGGGGGGCGGAGGTAGACA
GAGGGGGTGACGGACACGCCCGGCCCCGTGTTCTCTTGCGTCGAAATAAG
CTACCTGCCTTGGCAGGGAGGGGCGGGGAGAAAGACGTCAAGGCCTTGTG
CTTTTCCCCCGACTCGAGAAGCTTGGTGGTGGGCACAGGTGGAGGACGGG
TGCTGAGGGCGGGCTTGAAGGGAAGCCTGGTGGAGGAGGCTATCCGAGAC
ACGTCATTAGAAAGCGAGGAGGAACAGGGGGTGGTACGGCTGTCGTGCAG
CCAGGACGGGCGGCTGCTAGCGGTGGGGCGGTGGAATGGGGACGTGGAGC
TGTACGCAGTCCCTGCGAGCAGCAGCGGGGAGGACACGGGCTCCCTTTCT
TTGACCTGGCGACTCCCTCGACTGGACTCGGCCCCGACGGCGCTGGCCTT
CCATCCTGAGACGGACATCCTGGTGGTCGCCTGCGTGTCAAACCGATTCT
ACGTCTTCGACGCCGCCGGGCAAAGGCTCACGGACTGGTCTCAGGACATG
GGCCACCGCCTTCCCCGGGAGCTTTTGGATCGGCATGACTGCATCGTAGG
CGTCTGTTTCAACCCGGACTCGCCCCAGGCGGTGGTCCTGTACGGCTTCG
GCTTCGTCTGCTACGTGGACCTGGGCCGACCTCCTGGCCAACTCGTCCAG
ATCCTACCGGCCAGCCACCCTGCCGCCCTGGCCCAGAGGGCGAGCACCCG
CAAGCGACAACACGAGTGGCTACCGACTAGGAAGCAGAAGAAGCAAAGAG
GGGAGGCCGAAATTGCGCAAGTGTCCTCAAACAAGGTGATCCAGGCTATT
GAAGACAACGACATGGGGGGCACGCACGGACGGCGCAGGAGTCGTGGTGA
TAGCCTTGTGCAGGAGGCAGAGGAGCGCTCGCTTCCTCCAGGCAGCGATG
TTTCCGAGCAGTTGAACGGGAAAATGGTGAAGGAAGATGATGGGAACGAT
TCGTGGAATTTCAAAATGCACTTGGGGTACCAAGGCGTTGTGGCAGTGGA
GGCCCTAGGCCCTGATGAGCTGTTGTTGGTTGAAGAACCATGGATCAAAA
TCGTTAGCAAACTTCCAGATGTACTACATCGACACCGATATGGTACTTAA
GTTGATATTTGGCAGACGCTTAGGAAAGTATGATCAGCAAAGTAGTATGT
AAAGTTACAGGTGTTTCCAGGGCAAGAGGACGCCCTCAAAAAGCTGTGAA
CCTTGCGTGGCGGGGGGGCAGAAATACACCCAGAAAGCATTTAAAAGTAT
CAAGTCATTCACCATGAAGT

protein sequence of rna8303

>rna8303-protein ID=rna8303-protein|Name=rna8303|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MTLNFTDQAIRNTGTQSGAPMHDSTTTHSFLRLDQHLSGHLYAFLLVRDL
LSFSNTSKDVLLYVLTSQYWFTLCARRWPALLLSPASVSAFSPAYGSRLY
PLKRSVVRNEPTEEYVSCLPSSRAYKNAMERNCFRSIFLQHAEAELNWRR
GRPTTVIQERLEMPKEVSSSPVKALALVRVGTREVMLAAKRYHVGAYRVG
DSGHLPLSKGPELLLRAKSGNSMIYTMVVASGDPAKLLVAGNDTGVEVLD
WTVGRKLASLHHHASSVWCLGVDTDSHPDAAEACGQAGGTLMVASGGYCS
LALSDVDRQAEAAIAFHGHQSWIRGVHLDMGRHLLITGSADATCKAWDLR
RPGRVLTKFVHPNHFEEVRCLECAGPRLVTGCYDGVVREYDLGTGRYVST
LAKHEYAVETMQLSRETGRLVSVDWDGQVAYNRGMAYLSRTFGAQSVDTL
ALVHDVGEMQDISRDAFGRASGGSNHFVRPRYEDKHHGKIIGCDLQASAL
FHSEDGISHTRTSVACMQHDEERLVLGTTGGNVVSLLFRKSLNK

mRNA from alignment at KK037248.1:324838..326712+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8303 ID=rna8303|Name=rna8303|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at KK037248.1:324838..326712+ (Nannochloropsis gaditana)
TAGATGCCACACGGTTCCTAGTGGACGCTCTGTCCTCGGCGCCTTCGCGA
TGACCCTCAATTTTACTGACCAAGCCATCAGGAATACCGGTACCCAATCC
GGAGCCCCGATGCATgactccaccaccacccatTCTTTCTTGCGGCTTGA
CCAGCACTTGAGCGGTCATTTGTATGCCTTTTTGCTGGTGAGAGACTTGT
TGTCCTTTTCGAACACATCCAAGGACGTGCTTTTGTATGTGTTGACTTCA
CAGTATTGGTTCACTTTGtgcgcgaggaggtggccagCGCTGCTGCTATC
GCCTGCCAGTGTGAGCGCCTTCTCTCCTGCCTATGGCTCGAGGCTTTATC
CCCTCAAAAGAAGTGTAGTGAGAAACGAACCGACCGAGGAATATGTTTCC
TGTCTACCGTCCTCGCGTGCATACAAAAATGCGATGGAAAGAAATTGCTT
CCGCTCCATTTTTTTGCAGCATGCCGAGGCAGAGCTGAACTGGCGGCGGG
GCCGACCCACGACGGTAATACAAGAACGCCTTGAAATGCCAAAAGAAgtg
tcttcctcgcctgtgAAAGCGCTCGCACTTGTCAGAGTTGGTACCCGTGA
GGTGATGCTGGCTGCAAAACGTTACCATGTGGGCGCATATCGTGTGGGTG
ACTCCGGGCATCTGCCCTTGTCGAAAGGGCCCGAGCTTTTGCTCCGAGCC
AAGAGTGGAAATTCCATGATCTACACCATGGTTGTGGCTTCTGGTGACCC
AGCCAAGCTCTTGGTTGCCGGGAATGACACAGGGGTGGAAGTCTTGGATT
GGACGGTGGGGCGCAAACTAGCGAGTCTGCACCATCACGCCTCCAGCGTC
TGGTGCCTGGGCGTGGACACAGACAGCCACCCAGACGCAGCCGAGGCCTG
CGGCCAGGCGGGCGGCACCTTGATGGTCGCGTCCGGAGGCTACTGTAGCC
TGGCCCTCTCGGATGTGGACaggcaggcggaggccgccatcgccttccat
GGGCATCAGTCGTGGATCCGAGGCGTGCACTTGGACATGGGCCGACACCT
TTTGATCACCGGCTCGGCGGACGCCACCTGCAAGGCCTGGGACCTTCGCC
GGCCTGGGCGTGTGCTCACAAAATTCGTGCACCCGAATCATTTCGAGGAA
GTCAGGTGTCTGGAGTGTGCGGGGCCCCGGCTGGTCACCGGGTGCTACGA
CGGGGTCGTGCGGGAGTACGACTTGGGCACCGGACGCTATGTGAGCACGC
TGGCCAAGCACGAGTACGCGGTGGAGACCATGCAATTGTCGCGGGAGACG
GGCCGTCTCGTCAGCGTGGATTGGGACGGGCAGGTCGCCTACAACAGGGG
GATGGCCTACCTGTCGCGTACCTTCGGGGCTCAGTCTGTCGACACGCTCG
CCCTCGTGCATGATGTCGGGGAAATGCAGGATATTAGTAGAGACGCGTTT
GGGCGTGCATCGGGCGGCAGCAACCATTTTGTTCGGCCCCGCTATGAAGA
CAAGCACCATGGCAAGATCATCGGCTGCGATCTCCAGGCGTCCGCGCTCT
TCCacagcgaggacgggatCTCCCACACCCGGACCTCCGTGGCGTGCATG
CAGCATGATGAGGAGCGCCTTGTTCTGGGGACAACGGGTGGTAACGTTGT
CTCCCTGCTATTCAGGAAAAGCTTGAATAAATGACGAGCACAGTGAGGCC
GATAACGTGGGAGCGTCGCAGAAATCTAGTCCAGCCTCCTTTATCCATTT
GTTTTACCAAATTTAAGAAATTTAAAGAAAATATTACCCCAAGACGACAT
GCACATCTGATAGACACTGGACACCCAAGGGGTTGAAATGAAATTCCGGA
AAAGAAACGTAAACTGATGGCTCCT

Coding sequence (CDS) from alignment at KK037248.1:324838..326712+

>rna8303 ID=rna8303|Name=rna8303|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at KK037248.1:324838..326712+ (Nannochloropsis gaditana)
ATGACCCTCAATTTTACTGACCAAGCCATCAGGAATACCGGTACCCAATC
CGGAGCCCCGATGCATgactccaccaccacccatTCTTTCTTGCGGCTTG
ACCAGCACTTGAGCGGTCATTTGTATGCCTTTTTGCTGGTGAGAGACTTG
TTGTCCTTTTCGAACACATCCAAGGACGTGCTTTTGTATGTGTTGACTTC
ACAGTATTGGTTCACTTTGtgcgcgaggaggtggccagCGCTGCTGCTAT
CGCCTGCCAGTGTGAGCGCCTTCTCTCCTGCCTATGGCTCGAGGCTTTAT
CCCCTCAAAAGAAGTGTAGTGAGAAACGAACCGACCGAGGAATATGTTTC
CTGTCTACCGTCCTCGCGTGCATACAAAAATGCGATGGAAAGAAATTGCT
TCCGCTCCATTTTTTTGCAGCATGCCGAGGCAGAGCTGAACTGGCGGCGG
GGCCGACCCACGACGGTAATACAAGAACGCCTTGAAATGCCAAAAGAAgt
gtcttcctcgcctgtgAAAGCGCTCGCACTTGTCAGAGTTGGTACCCGTG
AGGTGATGCTGGCTGCAAAACGTTACCATGTGGGCGCATATCGTGTGGGT
GACTCCGGGCATCTGCCCTTGTCGAAAGGGCCCGAGCTTTTGCTCCGAGC
CAAGAGTGGAAATTCCATGATCTACACCATGGTTGTGGCTTCTGGTGACC
CAGCCAAGCTCTTGGTTGCCGGGAATGACACAGGGGTGGAAGTCTTGGAT
TGGACGGTGGGGCGCAAACTAGCGAGTCTGCACCATCACGCCTCCAGCGT
CTGGTGCCTGGGCGTGGACACAGACAGCCACCCAGACGCAGCCGAGGCCT
GCGGCCAGGCGGGCGGCACCTTGATGGTCGCGTCCGGAGGCTACTGTAGC
CTGGCCCTCTCGGATGTGGACaggcaggcggaggccgccatcgccttcca
tGGGCATCAGTCGTGGATCCGAGGCGTGCACTTGGACATGGGCCGACACC
TTTTGATCACCGGCTCGGCGGACGCCACCTGCAAGGCCTGGGACCTTCGC
CGGCCTGGGCGTGTGCTCACAAAATTCGTGCACCCGAATCATTTCGAGGA
AGTCAGGTGTCTGGAGTGTGCGGGGCCCCGGCTGGTCACCGGGTGCTACG
ACGGGGTCGTGCGGGAGTACGACTTGGGCACCGGACGCTATGTGAGCACG
CTGGCCAAGCACGAGTACGCGGTGGAGACCATGCAATTGTCGCGGGAGAC
GGGCCGTCTCGTCAGCGTGGATTGGGACGGGCAGGTCGCCTACAACAGGG
GGATGGCCTACCTGTCGCGTACCTTCGGGGCTCAGTCTGTCGACACGCTC
GCCCTCGTGCATGATGTCGGGGAAATGCAGGATATTAGTAGAGACGCGTT
TGGGCGTGCATCGGGCGGCAGCAACCATTTTGTTCGGCCCCGCTATGAAG
ACAAGCACCATGGCAAGATCATCGGCTGCGATCTCCAGGCGTCCGCGCTC
TTCCacagcgaggacgggatCTCCCACACCCGGACCTCCGTGGCGTGCAT
GCAGCATGATGAGGAGCGCCTTGTTCTGGGGACAACGGGTGGTAACGTTG
TCTCCCTGCTATTCAGGAAAAGCTTGAATAAATGA

Synonyms

Publications