rna830, rna830 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna830
Unique Name	rna830
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1220
Alignment location	CM002456.1:519923..521899 +

Link to JBrowse

Properties


Property Name	Value
Product	transaldolase
Orig transcript id	gnl\|cribi\|Naga_100017g20.311.mrna
Orig protein id	gnl\|cribi\|Naga_100017g20.311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:519923..521899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g20	gene794	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna830	rna830-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29813.1	cds830	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:519923..521899+
coding sequence from alignment at CM002456.1:519923..521899+

mRNA sequence

>rna830 ID=rna830|Name=rna830|organism=Nannochloropsis gaditana|type=mRNA|length=1220bp
GTCGAGGGCGAGAAGTGAAGCACCACGGGCGTGTGCATGGGGGCTTGGTA
CCAGGTAGGGATGGCCACACGTCTTTAGTGTTGGATGGAAGGCCATGACC
CTAGTGTCAGAAATGGTGGTTGTTTTGGGTGCTTATTTCGTCTGCCAGAC
TTGGTAACCAACCATTCTCAGCACTGCCGCAGAGAAGGAGGGCGGGGGCG
AAAGAGGGCTTATTTTCTTGGTGTCTACCAGGTTCTTTACTTGAGTAGGA
GTCTTGTTTTGGCATACTGCATATAAATGTGCCACTGTGCATGGAAGGAT
AAAGGGGCTGTCTCGCGTTTGGATGCAGTGCCTCGTACAGCCTCGAGAGG
CTTCGCCTTACGCCGCGACCCATGTTTCTACTTTTTCTCGCAATCGCACA
GCCTTTATCTCCGCAGCACCTGGCTCGGGACGATGGCAGACAAGAAGAAC
AATCCCATGCGGGAGCTTGTGGTGGAGAAATTGATCCTGAATTGTTGTGT
AGGTGAATCCGGCGATCGCTTGACGCGTGCGGCCAAGGTTTTGGAGCAGC
TTTCCGGGCAGACCCCGGTGTACTCGAAGGCCCGCTACACGGTCAGGTCC
TTCGGGATCCGGCGTAACGAGAAAATCTCCGTGCACGTGACTCTGCGAGG
GGATAAGGCCAACGAGATTCTGGACCGCGGCTTGAAGGTGAAGGAGTACG
AGCTTAAGAAGAAGAACTTTTCGCAGAACGGGAACTTCGGTTTCGGGATC
ACTGAGCATATCGACTTGGGGCTGAAATATGACCCCTCCACTGGCATCTA
CGGGATGGATTTCTACGTGGTCCTAGGCCGCAAGGGATTCCGGGTGGGAC
GCAGAAAGTTGAAGGTGGGCCGCGTGGGAGCCCCCCACCGGGTCACGCAG
AAGGATGCGATTGACTGGTTCCAGCAGAAATTCGAAGGGATCGTGTTGGG
CTAGAAGGAAGAGAGCTGTTTCAAGTACAGCAGACCTGGACAATCGCGCG
GGAAAGGAGACGAGATGGACGGTATCGCGCTTTATGAGTTAATGGTGATC
GCGTTTCCCGCGTGGAAGGAAGGAGGCGGAGATTGTCATGGCTTACCCCT
GTCACAGAAACCGAAGCTGTGCGGGAGCGTGGGTGGGGGGACATGCTGTG
AAGTAGTGGAGACAGCCTCAAGTGACAGACAAAGAAAAAGATATCACCGT
TCTCAACTCAGAGGCATTCC

protein sequence of rna830

>rna830-protein ID=rna830-protein|Name=rna830|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MSAPKKAKHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLIFKA
ASLPQYLSLVNDAVAYGKALPASHSDSERLAATMDRLAVNFGAEITKIVP
GYVSTEVDARLSYDKDETLKRARRIIGMYKELGISKERILIKIASTWEGI
KAAEALEQEGVKTNLTLLFSLAQAVAAAEAGATLVSPFVGRILDWWKKET
GKTFADAEEDPGVQSVRQIYGYYKKYGYETIVMGASFRNKGEITALAGCD
RLTISPGLLDELKDCHDPLPRVLEPENGSSFYDGERIRVDEKSFRLAMNA
DAMATAKLAEGIRGFAADIEKLEAMIAKMLVPPSDQFSQLAVFTTLVCDT
GDVEAIKRLKPTDATTNPSLIFKAASLPQYKPLVDSAIAAGKAVADAGMS
LKERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLSFDTDQTLARARRI
IGMYKELGISKERILIKIASTWEGIKAAEALEQEGVKTNLTLLFSLAQAV
AAAEAGATLVSPFVGRILDWWKKETGKTFADAEEDPGVQSVRQIYGYYKK
YGYETIVMGASFRNKGEITALAGCDRLTISPGLLDELKDCHDPLPRVLEA
SKAAAVYGGPKLHMNEKAFRFAMNADAMATDKLAEGIRGFAADIEKLEAM
IAKRLGEH

mRNA from alignment at CM002456.1:519923..521899+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna830 ID=rna830|Name=rna830|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp|location=Sequence derived from alignment at CM002456.1:519923..521899+ (Nannochloropsis gaditana)
ATGTCAGCTCCCAAGAAAGCAAAGCATGTGGACCAATTTACAGCTCTAGG
AGAGCTTACCACCTTGGTCTGCGACACGGGCGACGTGGAGGCGATCAAGC
GCCTCAAGCCGACGGATGCGACTACGAACCCGTCTCTCATCTTCAAAgcc
gcctcgctcccgcagTACCTTTCCCTTGTTAACGATGCCGTGGCTTATGG
GAaggcccttcccgcctcgcATTCTGATAGCGAGCGTTTAGCAGCAACCA
TGGACCGCCTTGCTGTAAATTTCGGGGCAGAGATCACCAAAATCGTGCCC
GGGTATGTAAGCACAGAGGTAGACGCCCGCCTTAGTTACGACAAGGATGA
AACGTTGAAGCGAGCGCGGCGCATCATCGGCATGTACAAAGAGCTGGGCA
TCTCCAAGGAGAGGATCCTGATCAAGATCGCCTCCACTTGGGAAGGGATC
AAGgccgcggaggccctggaaCAAGAGGGCGTCAAGACGaacctcaccct
cctcttcagcctCGCGCAAGCTGTGGCAGCGGCGGAAGCGGGCGCGACGT
TGGTCTCCCCCTTTGTAGGCCGTATCTTAGActggtggaagaaggaaacg
GGGAAGACGTTcgcggacgcggaggaggacccggGCGTGCAGTCCGTGCG
TCAGATCTACGGGTACTACAAGAAGTACGGCTACGAGACGATCGTGATGG
GGGCGTCTTTCCGCAACAAGGGGGAGATCACGGCGTTGGCAGGCTGCGAC
CGGCTGACCATCAGCCCGGGCCTCTTGGACGAGCTGAAAGATTGCCACGA
CCCACTGCCGCGGGTGCTGGAGCCGGAGAATGGGAGCTCGTTTTATGACG
GCGAACGGATCCGTGTGGATGAAAAATCCTTTCGACTGGCCATGAACGCC
GATGCAATGGCCACCGCCAAGTTGGCGGAGGGCATTCGCGGCTTCGCGGC
TGATATTGAGAAGCTGGAGGCGATGATCGCGAAAATGCTGGTTCCGCCCT
CAGACCAGTTCTCTCAGTTGGCAGTTTTCACCACCTTGGTCTGCGACACG
GGCGACGTGGAGGCGATCAAGCGCCTCAAGCCGACGGATGCTACTACGAA
CCCGTCTCTCATCTTCAAAgccgcctcgctcccgcagTACAAGCCTCTAG
TGGACTCCGCGATAGCCGCCGGGAAAGCAGTGGCGGATGCAGGAATGAGC
CTGAAAGAAAGGCTGGATCTAATATTGGACAGGCTGGCCGTAAATTTTGG
GGCAGAGATCACCAAAATCGTGCCCGGGTATGTAAGCACAGAGGTAgacg
cccgcctctcctttgACACGGATCAAACTCTGGCCAGGGCCCGGCGCATC
ATCGGCATGTACAAAGAGCTGGGCATCTCCAAGGAGAGGATCCTGATCAA
GATCGCCTCCACTTGGGAAGGGATCAAGgccgcggaggccctggaaCAAG
AGGGCGTCAAGACGaacctcaccctcctcttcagcctCGCGCAAGCTGTG
GCAGCGGCGGAAGCGGGCGCGACGTTGGTCTCCCCCTTTGTAGGCCGTAT
CTTAGActggtggaagaaggaaacgGGGAAGACGTTcgcggacgcggagg
aggacccggGCGTGCAGTCCGTGCGTCAGATCTACGGGTACTACAAGAAG
TACGGCTACGAGACGATCGTGATGGGGGCGTCTTTCCGCAACAAGGGGGA
GATCACGGCGTTGGCAGGCTGCGACCGGCTGACCATCAGTCCGGGCCTCT
TGGACGAGCTGAAGGATTGCCACGACCCACTGCcgcgggtgctggaggcT
AGCAAGGCCGCCGCTGTTTACGGAGGTCCAAAGCTGCACATGAACGAAAA
AGCTTTTAGGTTTGCCATGAATGCCGATGCAATGGCCACAGATAAGCTTG
CGGAAGGAATAAGGGGCTTCGCGGCTGATATTGAGAAGCTGGAAGCTATG
ATCGCAAAGAGGCTGGGAGAGCATTGA

Coding sequence (CDS) from alignment at CM002456.1:519923..521899+

>rna830 ID=rna830|Name=rna830|organism=Nannochloropsis gaditana|type=CDS|length=1977bp|location=Sequence derived from alignment at CM002456.1:519923..521899+ (Nannochloropsis gaditana)
ATGTCAGCTCCCAAGAAAGCAAAGCATGTGGACCAATTTACAGCTCTAGG
AGAGCTTACCACCTTGGTCTGCGACACGGGCGACGTGGAGGCGATCAAGC
GCCTCAAGCCGACGGATGCGACTACGAACCCGTCTCTCATCTTCAAAgcc
gcctcgctcccgcagTACCTTTCCCTTGTTAACGATGCCGTGGCTTATGG
GAaggcccttcccgcctcgcATTCTGATAGCGAGCGTTTAGCAGCAACCA
TGGACCGCCTTGCTGTAAATTTCGGGGCAGAGATCACCAAAATCGTGCCC
GGGTATGTAAGCACAGAGGTAGACGCCCGCCTTAGTTACGACAAGGATGA
AACGTTGAAGCGAGCGCGGCGCATCATCGGCATGTACAAAGAGCTGGGCA
TCTCCAAGGAGAGGATCCTGATCAAGATCGCCTCCACTTGGGAAGGGATC
AAGgccgcggaggccctggaaCAAGAGGGCGTCAAGACGaacctcaccct
cctcttcagcctCGCGCAAGCTGTGGCAGCGGCGGAAGCGGGCGCGACGT
TGGTCTCCCCCTTTGTAGGCCGTATCTTAGActggtggaagaaggaaacg
GGGAAGACGTTcgcggacgcggaggaggacccggGCGTGCAGTCCGTGCG
TCAGATCTACGGGTACTACAAGAAGTACGGCTACGAGACGATCGTGATGG
GGGCGTCTTTCCGCAACAAGGGGGAGATCACGGCGTTGGCAGGCTGCGAC
CGGCTGACCATCAGCCCGGGCCTCTTGGACGAGCTGAAAGATTGCCACGA
CCCACTGCCGCGGGTGCTGGAGCCGGAGAATGGGAGCTCGTTTTATGACG
GCGAACGGATCCGTGTGGATGAAAAATCCTTTCGACTGGCCATGAACGCC
GATGCAATGGCCACCGCCAAGTTGGCGGAGGGCATTCGCGGCTTCGCGGC
TGATATTGAGAAGCTGGAGGCGATGATCGCGAAAATGCTGGTTCCGCCCT
CAGACCAGTTCTCTCAGTTGGCAGTTTTCACCACCTTGGTCTGCGACACG
GGCGACGTGGAGGCGATCAAGCGCCTCAAGCCGACGGATGCTACTACGAA
CCCGTCTCTCATCTTCAAAgccgcctcgctcccgcagTACAAGCCTCTAG
TGGACTCCGCGATAGCCGCCGGGAAAGCAGTGGCGGATGCAGGAATGAGC
CTGAAAGAAAGGCTGGATCTAATATTGGACAGGCTGGCCGTAAATTTTGG
GGCAGAGATCACCAAAATCGTGCCCGGGTATGTAAGCACAGAGGTAgacg
cccgcctctcctttgACACGGATCAAACTCTGGCCAGGGCCCGGCGCATC
ATCGGCATGTACAAAGAGCTGGGCATCTCCAAGGAGAGGATCCTGATCAA
GATCGCCTCCACTTGGGAAGGGATCAAGgccgcggaggccctggaaCAAG
AGGGCGTCAAGACGaacctcaccctcctcttcagcctCGCGCAAGCTGTG
GCAGCGGCGGAAGCGGGCGCGACGTTGGTCTCCCCCTTTGTAGGCCGTAT
CTTAGActggtggaagaaggaaacgGGGAAGACGTTcgcggacgcggagg
aggacccggGCGTGCAGTCCGTGCGTCAGATCTACGGGTACTACAAGAAG
TACGGCTACGAGACGATCGTGATGGGGGCGTCTTTCCGCAACAAGGGGGA
GATCACGGCGTTGGCAGGCTGCGACCGGCTGACCATCAGTCCGGGCCTCT
TGGACGAGCTGAAGGATTGCCACGACCCACTGCcgcgggtgctggaggcT
AGCAAGGCCGCCGCTGTTTACGGAGGTCCAAAGCTGCACATGAACGAAAA
AGCTTTTAGGTTTGCCATGAATGCCGATGCAATGGCCACAGATAAGCTTG
CGGAAGGAATAAGGGGCTTCGCGGCTGATATTGAGAAGCTGGAAGCTATG
ATCGCAAAGAGGCTGGGAGAGCATTGA

Synonyms

Publications