rna8291, rna8291 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8291
Unique Name	rna8291
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2037
Alignment location	KK037248.1:290327..291826 +

Link to JBrowse

Properties


Property Name	Value
Product	homodimeric type
Orig transcript id	gnl\|cribi\|Naga_100067g8.2683.mrna
Orig protein id	gnl\|cribi\|Naga_100067g8.2683
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:290327..291826 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g8	gene8031	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8291	rna8291-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22395.1	cds8267	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:290327..291826+
coding sequence from alignment at KK037248.1:290327..291826+

mRNA sequence

>rna8291 ID=rna8291|Name=rna8291|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp
ATGTTGATTAGTCGTACGTACCCTGTGATAAGCCCTAATCCTAACAGGTT
GATTTCCTTATCTATCGACCGTACGCCCTCCCCACACAGCGACCTGCCTG
CGGAGCACATTTGCCTGAACGTTGCTGTTCTCATGGCACCCAATCAAGAA
ATCACGCCTCATACATTTGAGCGCATCCATGCCGGTCAAACTAAATTTAG
CCCTGTGGTACAGGTCATGGATTTCAAGCAAGTTCAGCCCAACCATGGCC
AACCTGGTCAAGTTCGGTACCGGTTGATTGTTTCGGACGGTACTCACTAC
CAGCAGGCCATGCTCGCCACGCAGCTAAATGTGCTCATCAACGAGGGCCA
GATTACGGAGCACGGGCTCATCTGCTTGGAAGAGTTTATTTGCAACGAGG
TCCAAGGGAGGAAAATTGTTATCATTCTTCGGTGTCACGTGGTGAGTCCC
TCCCTTGGCTACCGGGTGGGCGACCCGGTGGAGTACGGTAAAGCCGCCGG
CGGAAATGGTGGAATGCAAGGAGGACAGCCAGTCTACGGACAGCAGCCTC
AACAAGCACCTGCGCTCAACACCATGGCGGGCGCCTCTGTGCCGTACAAG
CCTGCAGGCAGCTCATCCGCTGGGTCAAGCAATGCCGGGGCTTACCCTCC
GTACAACTCTGGGGGTGCCGCGGGAGGCTATCGTGCTCCCTCGGGCCCTG
TGGTTCGCGCGGGCCCGCCACAATCAATCATTCCCATCAACGACCTGAAT
CCGTACATAAATCGGTGGGTGATCAAGGCGCGTGTGACCTCCAAGACGGA
CATCAAACGCTGGAGCAACGCCAAGGGAGAGGGGACGCTCTTCTCGGTCG
ACCTTCTGGACGAGTTCGATGGAGAGATCCGCGCCACCTTTTTCAAGGAA
GCCTGCGAAAAATTTTACCCTCTCCTCGAGCAGGGGCATGTCTACACGTT
CTCAGGAGGGAAGCTGAAACCGGCCCAGCGCCAGTACTCCTCCATACGGA
ACAACTACGAGACAACCTTCGATACGAACTCGGAGATCATGGAGGTAATG
GACGATCATAAGATCCAGTCGGCTGTCTATTCCTTCAAGAAGATCGGCGA
GCTGGAGGAGACCCCCCCGAACGCCACCATCGACGTCATCGGCGTCGTCA
AAGCCTTTTCCCCCCTGAGCACCATCACCACCAAGAAGGACGGTCGGGAG
GTGGAGAAGCGGGAGCTGACCCTCTGCGACGACACGGGCACGGAAGTCCG
GCTGACCGTGTGGGGAGAGAGGGCGAGCAAGCAGCCCGAGCAGTGGGAGA
ACCACCCGATCGTGGCTTTCAAAGGGGTCAAGGTATCCGACTACAACGGC
CGGTCCTTAGGGACGATGCCAGGCTCCCAAGTCACCGTCAGTCCCGACCT
GCCCGAGGCCCTCCACCTGCACAACTGGTGGCACAGTGCCGGGGCTACCG
CGGCCAGCACCTCCATCTCCTCCGGTGGGGGAGGGGGTGGCGGCGGAGGT
GGCTTCGCGGATAGGAAGGTGCTGTCTCAGATCAAGGAGGAGCAGTTGGG
TTTCGGGGAGAAGCCAGATTACATGGACGTCAAAGCCACTCTCACGTACA
TCAAGAGCGACCCCGACCCTTGGTATAGGTCCTGCACGTCCCCCGACTGC
AAACGAAAAGTCACGGAACAACTCAACTCCTACTTCTGCGAGAAATGCCA
GAGGGAAATGCCCGAGTGTGCCTACCGCTACATCCTCACCGTCTCTGGCA
CCGACCATTCGGGTTCGGTCTATTTGTCGTGCTTTGACGAGCATGCCAAC
ATCCTTCTCGGTAGATCGGCCGAAGAACTTAACTCGTTCAAGGCCTCTGA
CATGCAGGCGCGCTACGATGCTACTTTCCAAGAGGCCACTTTCGGGACGC
ATATTCTCCGACTTCGCGTGAAAGCAGAGCAAGTGAATGATGAGCAACGG
GTCAAAAGTACGATTATGAACATTCGGCCAGTGAACCTCGTTCAAGAGAT
CAGAGACCTCATAACTGCTATCAAAGCGTACAATTAG

protein sequence of rna8291

>rna8291-protein ID=rna8291-protein|Name=rna8291|organism=Nannochloropsis gaditana|type=polypeptide|length=410bp
MRGFNRMVIGYYKMKWAAQSGCVRKWRSLNERRKQIEAHESINARPTGVF
LHQFSASGVLAAMVTNELTIIKPDDFHHHFRDGDALKSVVPLVASRFRRA
IAMPNLKPPVTTTTQAVAYRERILAALPAGAIFTPLMTLYLTDRTTADEI
YAARASGIVFAVKLYPAGATTNSDSGVTDMQAIRPALKAMAEVGIPLLVH
SEVTDADVDVFHREAAFIVRILQPLVDENPDLKVVMEHITTSEGVDFVMA
CGSNVAATITPQHLMYNRNAIFQGGLQPHVYCLPVLKHERHRQALLGAIA
SGSSKFFLGTDSAPHPQTAKESTSGCAGCFSAFAGLELYAEVFESIGALD
KFEAFTSKNGAAFYGLADNTEKLTLQRKAWRVPMTYPLGQDTVVVPLRAG
QEMAWSVKQG

mRNA from alignment at KK037248.1:290327..291826+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8291 ID=rna8291|Name=rna8291|organism=Nannochloropsis gaditana|type=mRNA|length=1500bp|location=Sequence derived from alignment at KK037248.1:290327..291826+ (Nannochloropsis gaditana)
ATGAGGGGGTTTAACAGGATGGTAATTGGATACTACAAAATGAAATGGGC
CGCTCAGAGTGGATGTGTGCGAAAGTGGCGGTCACTGAACGAAAGAAGAA
AACAAATGTGACATGATCCTCAATGGTTTCCACGCGAAGAAGTTCAGGCG
TCCGATCAAGCCGAATTGCTTCCGTTTATTGCACCCGCGTGAACTTCCCA
CTCACAACGACATTTCTGCGcaccttggcggcggcggcgagacGCGCAGC
ATTGATATCAGTCACGTTCCTGGTCAACTTAGACAGACGAGTGacaaaaa
gggaaaggccTATCCACAGTGCAACTGTATGAGAATCCACAATACGTGAT
GTTCTTTTTTTTCGAGTTTCTTAGAGAAGCTCATGAATCCATCAACGCAC
GTCCAACAGGCGTATTTTTGCATCAGTTCAGCGCTTCTGGCGTTCTGGCA
GCCATGGTCACAAATGAGCTCACAATTATCAAGCCCGATgacttccacca
ccactttcGTGACGGAGACGCCTTGAAATCCGTTGTACCACTAGTTGCAT
CGCGATTTCGTCGTGCCATCGCCATGCCCAACCTAAAACCGCCTGTCACC
ACGACGACCCAGGCCGTCGCTTATCGGGAACGCATTTTGGCAGCTCTGCC
TGCAGGGGCGATATTCACACCGCTGATGACCCTGTATCTGACCGATCGCA
CTACGGCCGATGAGATTTACGCCGCTCGGGCCTCGGGAATCGTTTTTGCG
GTCAAGCTGTATCCTGCGGGAGCCACTACTAATTCTGACTCTGGTGTCAC
TGACATGCAGGCCATTCGCCCCGCCTTAAAGGCGATGGCCGAGGTTGGTA
TACCCCTGCTCGTCCACAGTGAGGTCACAGATGCGGATGTGGACGTCTTT
CATCGTGAAGCGGCATTTATCGTGCGTATTTTGCAGCCTTTGGTCGATGA
GAACCCGGATCTGAAGGTAGTCATGGAACACATAACCACGTCGGAGGGCG
TCGACTTCGTCATGGCGTGTGGTTCCAACGTTGCCGCCACTATCACTCCT
CAGCACCTTATGTACAATCGGAACGCGATTTTTCAAGGAGGCCTCCAACC
CCACGTGTACTGCCTGCCTGTACTCAAGCATGAGCGCCACCGGCAGGCCT
TGCTAGGGGCCATTGCCAGCGGGTCCTCCAAGTTCTTCTTGGGAACAGAC
AGTGCTCCGCACCCTCAAACGGCTAAGGAGAGCACGAGTGGATGTGCGGG
ATGCTTTTCAGCGTTTGCGGGGCTTGAATTGTACGCTGAAGTGTTCGAAT
CCATAGGTGCTCTCGATAAATTTGAGGCTTTCACCTCTAAAAATGGAGCG
GCATTTTATGGATTAGCGGACAACACGGAGAAGCTGACCTTACAACGGAA
AGCCTGGAGAGTCCCAATGACGTACCCCCTGGGACAGGACACGGTGGTAG
TTCCTCTGAGGGCTGGGCAAGAAATGGCATGGTCTGTGAAGCAAGGCTGA

Coding sequence (CDS) from alignment at KK037248.1:290327..291826+

>rna8291 ID=rna8291|Name=rna8291|organism=Nannochloropsis gaditana|type=CDS|length=2466bp|location=Sequence derived from alignment at KK037248.1:290327..291826+ (Nannochloropsis gaditana)
ATGAGGGGGTTTAACAGGATGGTAATTGGATACTACAAAATGAAATGGGC
CGCTCAGAGTGGATGTGTGCGAAAGTGGCGGTCACTGAACGAAAGAAGAA
AACAAATAGAAGCTCATGAATCCATCAACGCACGTCCAACAGGCGTATTT
TTGCATCAGTTCAGCGCTTCTGGCGTTCTGGCAGCCATGGTCACAAATGA
GCTCACAATTATCAAGCCCGATgacttccaccaccactttcGTGACGGAG
ACGCCTTGAAATCCGTTGTACCACTAGTTGCATCGCGATTTCGTCGTGCC
ATCGCCATGCCCAACCTAAAACCGCCTGTCACCACGACGACCCAGGCCGT
CGCTTATCGGGAACGCATTTTGGCAGCTCTGCCTGCAGGGGCGATATTCA
CACCGCTGATGACCCTGTATCTGACCGATCGCACTACGGCCGATGAGATT
TACGCCGCTCGGGCCTCGGGAATCGTTTTTGCGGTCAAGCTGTATCCTGC
GGGAGCCACTACTAATTCTGACTCTGGTGTCACTGACATGCAGGCCATTC
GCCCCGCCTTAAAGGCGATGGCCGAGGTTGGTATACCCCTGCTCGTCCAC
AGTGAGGTCACAGATGCGGATGTGGACGTCTTTCATCGTGAAGCGGCATT
TATCGTGCGTATTTTGCAGCCTTTGGTCGATGAGAACCCGGATCTGAAGG
TAGTCATGGAACACATAACCACGTCGGAGGGCGTCGACTTCGTCATGGCG
TGTGGTTCCAACGTTGCCGCCACTATCACTCCTCAGCACCTTATGTACAA
TCGGAACGCGATTTTTCAAGGAGGCCTCCAACCCCACGTGTACTGCCTGC
CTGTACTCAAGCATGAGCGCCACCGGCAGGCCTTGCTAGGGGCCATTGCC
AGCGGGTCCTCCAAGTTCTTCTTGGGAACAGACAGTGCTCCGCACCCTCA
AACGGCTAAGGAGAGCACGAGTGGATGTGCGGGATGCTTTTCAGCGTTTG
CGGGGCTTGAATTGTACGCTGAAGTGTTCGAATCCATAGGTGCTCTCGAT
AAATTTGAGGCTTTCACCTCTAAAAATGGAGCGGCATTTTATGGATTAGC
GGACAACACGGAGAAGCTGACCTTACAACGGAAAGCCTGGAGAGTCCCAA
TGACGTACCCCCTGGGACAGGACACGGTGGTAGTTCCTCTGAGGGCTGGG
CAAGAAATGGCATGGTCTGTGAAGCAAGGCTGAATGAGGGGGTTTAACAG
GATGGTAATTGGATACTACAAAATGAAATGGGCCGCTCAGAGTGGATGTG
TGCGAAAGTGGCGGTCACTGAACGAAAGAAGAAAACAAATAGAAGCTCAT
GAATCCATCAACGCACGTCCAACAGGCGTATTTTTGCATCAGTTCAGCGC
TTCTGGCGTTCTGGCAGCCATGGTCACAAATGAGCTCACAATTATCAAGC
CCGATgacttccaccaccactttcGTGACGGAGACGCCTTGAAATCCGTT
GTACCACTAGTTGCATCGCGATTTCGTCGTGCCATCGCCATGCCCAACCT
AAAACCGCCTGTCACCACGACGACCCAGGCCGTCGCTTATCGGGAACGCA
TTTTGGCAGCTCTGCCTGCAGGGGCGATATTCACACCGCTGATGACCCTG
TATCTGACCGATCGCACTACGGCCGATGAGATTTACGCCGCTCGGGCCTC
GGGAATCGTTTTTGCGGTCAAGCTGTATCCTGCGGGAGCCACTACTAATT
CTGACTCTGGTGTCACTGACATGCAGGCCATTCGCCCCGCCTTAAAGGCG
ATGGCCGAGGTTGGTATACCCCTGCTCGTCCACAGTGAGGTCACAGATGC
GGATGTGGACGTCTTTCATCGTGAAGCGGCATTTATCGTGCGTATTTTGC
AGCCTTTGGTCGATGAGAACCCGGATCTGAAGGTAGTCATGGAACACATA
ACCACGTCGGAGGGCGTCGACTTCGTCATGGCGTGTGGTTCCAACGTTGC
CGCCACTATCACTCCTCAGCACCTTATGTACAATCGGAACGCGATTTTTC
AAGGAGGCCTCCAACCCCACGTGTACTGCCTGCCTGTACTCAAGCATGAG
CGCCACCGGCAGGCCTTGCTAGGGGCCATTGCCAGCGGGTCCTCCAAGTT
CTTCTTGGGAACAGACAGTGCTCCGCACCCTCAAACGGCTAAGGAGAGCA
CGAGTGGATGTGCGGGATGCTTTTCAGCGTTTGCGGGGCTTGAATTGTAC
GCTGAAGTGTTCGAATCCATAGGTGCTCTCGATAAATTTGAGGCTTTCAC
CTCTAAAAATGGAGCGGCATTTTATGGATTAGCGGACAACACGGAGAAGC
TGACCTTACAACGGAAAGCCTGGAGAGTCCCAATGACGTACCCCCTGGGA
CAGGACACGGTGGTAGTTCCTCTGAGGGCTGGGCAAGAAATGGCATGGTC
TGTGAAGCAAGGCTGA

Synonyms

Publications