rna8287, rna8287 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8287
Unique Name	rna8287
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2660
Alignment location	KK037248.1:281922..283923 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100067g3.2679.mrna
Orig protein id	gnl\|cribi\|Naga_100067g3.2679
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:281922..283923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100067g3	gene8027	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8287	rna8287-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22391.1	cds8263	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:281922..283923+
coding sequence from alignment at KK037248.1:281922..283923+

mRNA sequence

>rna8287 ID=rna8287|Name=rna8287|organism=Nannochloropsis gaditana|type=mRNA|length=2660bp
GAGGCCTTCGCGGCTCAGGAAAGCGAAGATGAGCATCGAGCCTTATGACA
ATTGACACCTTTTCCTCGGCACCAGGTGCGACGGAGACGTTTGGGCGGGC
ATCAAGACCGAAAGATGCCGATCGACATAAACCTTTTACGGGTCGATCGT
GGCGGAGACCCGAATCTTGTGCGGGAGTCCCAGCGCCGGCGCTTCGCATC
CGTCGAACTCGTGGACGAGGTAGGTTATCAAGAGAGGTCATTTGTGCGGC
GCAAGCCCGGAAAAATTTGGGTCTGCTTACTTATACAACGCTCATCTCCA
TGATACTTAATGTTCCAATTCACACGTGGGTGCGTTGTTTGTTGTCCGTC
GACTTTCCCCTAGGTGCTAGCCAGGGATGCAAGCTGGCGGAAACTCGTGA
ACGATTCGGATGCAACACGGAAAGCCCGCAATGCGGTGCAGGCAGAGGTC
TCAAAGAAAATGAAGGCTAAAGAAGAGTGTCGCGACTTGGTGACCAAAAT
TCAAGAGTTTGACAAGCAAGTGCTTGAAATGGACCGGGCAGTCAAGGCGG
CCAAGGAAGAGGTTGATAAGTTGCTGCCCAAAATCGGCAACATCGTCGAT
GACTCCGTCCCCGTCTCTCAAGACGAAGAGGCCGACACCGAAGTTGTCCG
AACGTGGGGCACGCCTGTAACGGGGGATGATCTCTTGCACCACCACGACC
TCTTATGGCGCATTGGAGGCTTCGAGCCTGAGAGGGGCAGCGCCGTTGCC
GGGCATCGGGGTTACTTTCTGCGCGACGCGGGCCTGCTCTTGAACATGGC
CTTGGTCAACTACGGGGTCTCGTTCTTGCGTGCTCGGAAATACTCGGTCT
TGCAGCCGCCTTACTTTATGAACCGTGATGTCATGGCGGGCGTGGCGCAG
CTGGAGCAGTTTGATGAGGAGTTATACAAAGTGACAGGCGACGACGAAAA
GTACCTCATCGCAACTTCTGAGCAGCCGCTGTGTGGCTTTCATAAGGGCG
AATGGCTGGAAGAGAAGACCCTGCCGTTGCGCTACGGGGGTGTATCGACG
TGCTTTCGGAAGGAAGCGGGCGCGCACGGGAAGGACTGCTGGGGCATCTT
TCGTGTCCATCAATTTGATAAGGTGGAGCAATTTGTGGTGTGCGAGGGCG
ATTTGGAAGCTTCGCAGAAGATGCAGGAGGAAATGATAATTGCGGCGGAG
GACTTCTATCAGTCGTTGGGGATCGCTTACAGGGTGGTGAACATTGTGTC
GGGGGAGTTGAACAACGCGGCGATCAAGAAATTCGACCTGGAAGGGTGGT
TTCCAGGCTACGACGCCTACCGCGAGTTGGTCTCCTGCTCCAACTGCACG
GATTATCAGAGTCGCTCGATGGAGATCCGTTGCGGGACGAAGAAAGTGGG
ACAGGAAGGAAAGAAATACGTGCACATGCTCAATTCGACTCTGTGCGCGT
GCACTCGGACAATTTGTGCGATTTTGGAAAATTTTCAAGTTAAGGATGGC
ATTCGCGTGCCAGAGGTCCTGGTCCCGTTTATGGGGGGCCTCACCTTCTT
GCCCTTTGTGAGGGAGGGGCGGAAAGATGCTGCGACAGCCAAGGCGGCCG
ATAAGAAGCCGAAGAAGACAGCAGCTCCGAAGGGCATGGCGCCGGCCGTT
GGGAAGGCTCAGAATGGAACTGGGACCCCGTCAGAAACTGAGGAATTAGC
GAACGCCATCGCCGCAAAGGGAGAAGAGATTCGGCAGCTTAAATTGAAGA
AAGCCGACAAGGCAACAGTACAGCCACACGTTGAAACGCTGCTGTCGCTC
AAGCGAGACTACAAGGCAGCAACAGGTGAGGAGTACGCGGCACCAAGCGC
AGGCCAGGCACAGAATCCAAAGCCTGCGGTAAGGGCTCTCAACCCGCCGC
CTCTGCCGTCAACCGGAAACGCAGGAGAGGGAGCTGGAGTGGAAGAGGCT
ATTACGGCCAAAGGGGAGGAAATTCGGGCGCTGAAGGCACGCAAAGCGGA
TAAAGAAACCTTGGGCCCCCACATTGCTGAACTGCTGAATTTAAAAGCGA
AATACAAGGCTCTCACAGGCGCAGATTTTGTAGCTCCGAGCGCGGGAAGC
ACCAGCGTCCACGACAAGAAAGTTGCGGCTTCACAAACGTCCCCAAAAGT
TGTGTCCACGTCGATCCCATCCACCAAAAATAAAACAGGAACGAACAAGG
CAGAGCATGTGGCTGGAAGGAATAGTGGAGCAATAGAAGATGTACAAGGC
CCCATTCTGGATGCAACAGGGAAACCCATCCTGGCGAATTTGAATACCTA
TCTACAGACGCGTAGTTACATCAGAGGCTTCGTACCGAGCCAGGAGGACA
ATGTGGTAGCTGTCGCAGTCATTTCAATGGAGAAAGATGGAGTTGACAAA
GTGAGATACCCTCATCTTTCTCGATGGCTGCGACACGTAGGAGCTGTGTC
ATCAGCCGAGCGCATGGCGTGGCAAGCGTAAGAAGAGGTCAGAGCCGAAG
TGGGATGTCCGAAAAGACAAACGAAGCGGGATATGACAGCTACGACAACA
GTTGGGACGGACAGGAGATCATACGCAACGTAAAAAGAAAAGTTAGCGAA
TGAGAAAGGCAAAGCGAACGCGCGAATTTTTCTGTCAGACGCCTTTTCCA
CCATTTCTCA

protein sequence of rna8287

>rna8287-protein ID=rna8287-protein|Name=rna8287|organism=Nannochloropsis gaditana|type=polypeptide|length=652bp
MQRRRQERIIMIISYISVLGVAFMPGATRAFRPPLLGPPLRAPEATSPSV
SILTHQFPERRAWSKHALCSAYQPFDRRSRTRLGLGTLASEQLMIPPPEK
ILAAVEKAGGRVTVQDVAALAGEDLAVAQKGLVKLAALVEGDLEVGKDGD
LVYNFPRNFRTALRTRSFTQQAKELWLKLWPSLFYVTRVSFGLCLILSIV
LVFATIAFAGSATQGGDREDDRRRDRGGFGGGMGMYFGPSPFDFFYYRPY
GYYYATGSQGRGREGEPAEMGFLESCFSYIFGDGDPNAGLEEERYREIAG
VIRRNGGAVVAEQLAPYLDVPAPPDPTAYATGGGGALTAVVDESFVLPIL
TRLNGRPEVTSEGDIIYVFPEFMTSAVEEGRERGREALDAGWARQVRVDE
EVRQYQGLSASEIRQALLVKRVPVQDCFDKASLLERLKGFLLSAPSTAQA
LGEAPYLSEQPVPFSLAPTTNRVFAGILGVANLGGAIVLGDILSKYSAMY
GSTGLPGLLGLSQALYPALIVYAVGFNLIPFLRSRWLNLKNAEIARRNEA
RQSWAGILGRAVGPLYEKILAARHYRSNLKVIKKEDVLYTSGKSVAEQSN
REKGVEGHFCEAIDGHCGGVKVVSQMGKVRYDGQRLDERRGRQYSPGKQS
QA

mRNA from alignment at KK037248.1:281922..283923+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8287 ID=rna8287|Name=rna8287|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp|location=Sequence derived from alignment at KK037248.1:281922..283923+ (Nannochloropsis gaditana)
ATGCAGAGAAGAAGACAAGAGAGAATTATTATGATAATATCCTACATAAG
TGTTCTTGGCGTGGCCTTCATGCCTGGCGCGACGCGGGCTTTCAGGCCTC
CCCTGCTCGGGCCCCCCCTGAGAGCCCCCGAAGCCACTTCACCATCCGTC
TCAATCCTGACGCATCAGTTCCCAGAAAGACGCGCGTGGTCTAAACACGC
CCTCTGCTCTGCCTACCAACCCTTTGACCGTCGATCGCGAACGCGATTGG
GACTCGGCACCTTGGCCTCAGAGCAGCTCATGATACCCCCTCCGGAAAAG
ATCCTCGCTGCGGTcgaaaaggcaggagggcgtgTAACGGTGCAGGACGT
GGCAGCCTTGGCTGGTGAGGACTTGGCAGTTGCACAGAAAGGTCTCGTTA
AGCTCGCGGCtttggtggagggagacctGGAGGTAGGCAAAGACGGGGAC
TTGGTTTATAATTTTCCTCGAAATTTTCGTACCGCCCTCCGCACGCGCTC
CTTCACCCAACAAGCAAAAGAGCTCTGGCTCAAGCTTTGGCCAAGCTTGT
TCTATGTAACACGCGTCTCCTTTGGCCTCTGCCTGATCCTCTCTATCGTC
CTGGTGTTCGCCACCATCGCCTTCGCGGGCTCGGCCACCCAGGGCGGAGA
CAGAGAGGATGACCGTcggagggaccgaggggggtttggggggggcatgg
gaaTGTACTTTGGACCCAGCCCCTTCGATTTTTTCTACTACCGGCCGTAC
GGCTACTACTACGCGACGGGAagccaggggaggggaagggaaggggagcc
cGCGGAGATGGGCTTCTTGGAGTCTTGCTTCTCCTACATCTTCGGGGATG
GGGACCCGAACGCAGGTCTCGAGGAAGAAAGGTATCGGGAGATAGCGGGC
GTGATCCGGCGGAACGGTGgcgcggtggtggcggagcaGCTGGCCCCGTA
TTTGGAcgtgcccgcccctcccgacccgACGGCCTACGCgacgggcggag
gcggggcctTGACcgcggtggtggacgagTCCTTCGTCTTGCCCATCCTG
ACCCGCCTGAACGGGCGCCCGGAAGTTACTTCCGAGGGGGACATCATCTA
CGTGTTCCCGGAGTTCATGACCTCGgcagtggaagaagggagagagagag
ggagggaggccctgGATGCGGGGTGGGCTCGCCAGGTGCgagtggacgag
gaagtccGGCAGTACCAGGGCCTGAGCGCCTCCGAAATCAGACAGGCGCT
CCTGGTCAAGCGTGTGCCCGTGCAAGACTGCTTCGACAAAGCCTCCCTGT
TGGAACGCCTCAAGGGCTTTCTACTCTCCGCTCCCTCGACCGCCCAGGCC
CTAGGGGAGGCTCCCTACTTGTCAGAGCAACCCgtgcccttctccctcgc
gcccacCACGAACCGTGTCTTCGCGGGCATTTTGGGTGTGGCTAATCTAG
GCGGGGCGATCGTTCTCGGCGACATATTGAGCAAATACTCCGCCATGTAC
GGGAGTACCGGCCTTCCAGGCCTGCTCGGCCTGAGCCAAGCCCTGTATCC
TGCACTCATTGTATACGCCGTCGGCTTCAACCtgatccctttcctccgGT
CCCGGTGGCTCAATTTGAAGAACGcagaaattgcgcgaaggaATGAGGCT
CGGCAAAGCTGGGCAGGTATcctggggagggcggtagGTCCGCTGTACGA
GAAGATTTTGGCGGCCAGACATTACCGCTCGAATCTCAAAGTGAtaaaga
aagaggacgtgTTGTACACCAGTGGAAAGAGCGTGGCGGAGCAGTCAAAT
cgggaggtgggggactTGCAAGCCTTCGATCGGCAAatggaagagagaga
aaggggtggaaggacACTTTTGTGAAGCAATTGACGGACATTGCGGGGGA
GTCAAAGTCGTTAGTCAGATGGGAAAAGTACGATACGATGGACAACGGTT
AGACGAGCGAAGAGGCAGACAATATTCCCCGGGCAAGCAGAGTCAAGCTT
GA

Coding sequence (CDS) from alignment at KK037248.1:281922..283923+

>rna8287 ID=rna8287|Name=rna8287|organism=Nannochloropsis gaditana|type=CDS|length=3918bp|location=Sequence derived from alignment at KK037248.1:281922..283923+ (Nannochloropsis gaditana)
ATGCAGAGAAGAAGACAAGAGAGAATTATTATGATAATATCCTACATAAG
TGTTCTTGGCGTGGCCTTCATGCCTGGCGCGACGCGGGCTTTCAGGCCTC
CCCTGCTCGGGCCCCCCCTGAGAGCCCCCGAAGCCACTTCACCATCCGTC
TCAATCCTGACGCATCAGTTCCCAGAAAGACGCGCGTGGTCTAAACACGC
CCTCTGCTCTGCCTACCAACCCTTTGACCGTCGATCGCGAACGCGATTGG
GACTCGGCACCTTGGCCTCAGAGCAGCTCATGATACCCCCTCCGGAAAAG
ATCCTCGCTGCGGTcgaaaaggcaggagggcgtgTAACGGTGCAGGACGT
GGCAGCCTTGGCTGGTGAGGACTTGGCAGTTGCACAGAAAGGTCTCGTTA
AGCTCGCGGCtttggtggagggagacctGGAGGTAGGCAAAGACGGGGAC
TTGGTTTATAATTTTCCTCGAAATTTTCGTACCGCCCTCCGCACGCGCTC
CTTCACCCAACAAGCAAAAGAGCTCTGGCTCAAGCTTTGGCCAAGCTTGT
TCTATGTAACACGCGTCTCCTTTGGCCTCTGCCTGATCCTCTCTATCGTC
CTGGTGTTCGCCACCATCGCCTTCGCGGGCTCGGCCACCCAGGGCGGAGA
CAGAGAGGATGACCGTcggagggaccgaggggggtttggggggggcatgg
gaaTGTACTTTGGACCCAGCCCCTTCGATTTTTTCTACTACCGGCCGTAC
GGCTACTACTACGCGACGGGAagccaggggaggggaagggaaggggagcc
cGCGGAGATGGGCTTCTTGGAGTCTTGCTTCTCCTACATCTTCGGGGATG
GGGACCCGAACGCAGGTCTCGAGGAAGAAAGGTATCGGGAGATAGCGGGC
GTGATCCGGCGGAACGGTGgcgcggtggtggcggagcaGCTGGCCCCGTA
TTTGGAcgtgcccgcccctcccgacccgACGGCCTACGCgacgggcggag
gcggggcctTGACcgcggtggtggacgagTCCTTCGTCTTGCCCATCCTG
ACCCGCCTGAACGGGCGCCCGGAAGTTACTTCCGAGGGGGACATCATCTA
CGTGTTCCCGGAGTTCATGACCTCGgcagtggaagaagggagagagagag
ggagggaggccctgGATGCGGGGTGGGCTCGCCAGGTGCgagtggacgag
gaagtccGGCAGTACCAGGGCCTGAGCGCCTCCGAAATCAGACAGGCGCT
CCTGGTCAAGCGTGTGCCCGTGCAAGACTGCTTCGACAAAGCCTCCCTGT
TGGAACGCCTCAAGGGCTTTCTACTCTCCGCTCCCTCGACCGCCCAGGCC
CTAGGGGAGGCTCCCTACTTGTCAGAGCAACCCgtgcccttctccctcgc
gcccacCACGAACCGTGTCTTCGCGGGCATTTTGGGTGTGGCTAATCTAG
GCGGGGCGATCGTTCTCGGCGACATATTGAGCAAATACTCCGCCATGTAC
GGGAGTACCGGCCTTCCAGGCCTGCTCGGCCTGAGCCAAGCCCTGTATCC
TGCACTCATTGTATACGCCGTCGGCTTCAACCtgatccctttcctccgGT
CCCGGTGGCTCAATTTGAAGAACGcagaaattgcgcgaaggaATGAGGCT
CGGCAAAGCTGGGCAGGTATcctggggagggcggtagGTCCGCTGTACGA
GAAGATTTTGGCGGCCAGACATTACCGCTCGAATCTCAAAGTGAtaaaga
aagaggacgtgTTGTACACCAGTGGAAAGAGCGTGGCGGAGCAGTCAAAT
cgggagaaaggggtggaaggacACTTTTGTGAAGCAATTGACGGACATTG
CGGGGGAGTCAAAGTCGTTAGTCAGATGGGAAAAGTACGATACGATGGAC
AACGGTTAGACGAGCGAAGAGGCAGACAATATTCCCCGGGCAAGCAGAGT
CAAGCTTGAATGCAGAGAAGAAGACAAGAGAGAATTATTATGATAATATC
CTACATAAGTGTTCTTGGCGTGGCCTTCATGCCTGGCGCGACGCGGGCTT
TCAGGCCTCCCCTGCTCGGGCCCCCCCTGAGAGCCCCCGAAGCCACTTCA
CCATCCGTCTCAATCCTGACGCATCAGTTCCCAGAAAGACGCGCGTGGTC
TAAACACGCCCTCTGCTCTGCCTACCAACCCTTTGACCGTCGATCGCGAA
CGCGATTGGGACTCGGCACCTTGGCCTCAGAGCAGCTCATGATACCCCCT
CCGGAAAAGATCCTCGCTGCGGTcgaaaaggcaggagggcgtgTAACGGT
GCAGGACGTGGCAGCCTTGGCTGGTGAGGACTTGGCAGTTGCACAGAAAG
GTCTCGTTAAGCTCGCGGCtttggtggagggagacctGGAGGTAGGCAAA
GACGGGGACTTGGTTTATAATTTTCCTCGAAATTTTCGTACCGCCCTCCG
CACGCGCTCCTTCACCCAACAAGCAAAAGAGCTCTGGCTCAAGCTTTGGC
CAAGCTTGTTCTATGTAACACGCGTCTCCTTTGGCCTCTGCCTGATCCTC
TCTATCGTCCTGGTGTTCGCCACCATCGCCTTCGCGGGCTCGGCCACCCA
GGGCGGAGACAGAGAGGATGACCGTcggagggaccgaggggggtttgggg
ggggcatgggaaTGTACTTTGGACCCAGCCCCTTCGATTTTTTCTACTAC
CGGCCGTACGGCTACTACTACGCGACGGGAagccaggggaggggaaggga
aggggagcccGCGGAGATGGGCTTCTTGGAGTCTTGCTTCTCCTACATCT
TCGGGGATGGGGACCCGAACGCAGGTCTCGAGGAAGAAAGGTATCGGGAG
ATAGCGGGCGTGATCCGGCGGAACGGTGgcgcggtggtggcggagcaGCT
GGCCCCGTATTTGGAcgtgcccgcccctcccgacccgACGGCCTACGCga
cgggcggaggcggggcctTGACcgcggtggtggacgagTCCTTCGTCTTG
CCCATCCTGACCCGCCTGAACGGGCGCCCGGAAGTTACTTCCGAGGGGGA
CATCATCTACGTGTTCCCGGAGTTCATGACCTCGgcagtggaagaaggga
gagagagagggagggaggccctgGATGCGGGGTGGGCTCGCCAGGTGCga
gtggacgaggaagtccGGCAGTACCAGGGCCTGAGCGCCTCCGAAATCAG
ACAGGCGCTCCTGGTCAAGCGTGTGCCCGTGCAAGACTGCTTCGACAAAG
CCTCCCTGTTGGAACGCCTCAAGGGCTTTCTACTCTCCGCTCCCTCGACC
GCCCAGGCCCTAGGGGAGGCTCCCTACTTGTCAGAGCAACCCgtgccctt
ctccctcgcgcccacCACGAACCGTGTCTTCGCGGGCATTTTGGGTGTGG
CTAATCTAGGCGGGGCGATCGTTCTCGGCGACATATTGAGCAAATACTCC
GCCATGTACGGGAGTACCGGCCTTCCAGGCCTGCTCGGCCTGAGCCAAGC
CCTGTATCCTGCACTCATTGTATACGCCGTCGGCTTCAACCtgatccctt
tcctccgGTCCCGGTGGCTCAATTTGAAGAACGcagaaattgcgcgaagg
aATGAGGCTCGGCAAAGCTGGGCAGGTATcctggggagggcggtagGTCC
GCTGTACGAGAAGATTTTGGCGGCCAGACATTACCGCTCGAATCTCAAAG
TGAtaaagaaagaggacgtgTTGTACACCAGTGGAAAGAGCGTGGCGGAG
CAGTCAAATcgggagaaaggggtggaaggacACTTTTGTGAAGCAATTGA
CGGACATTGCGGGGGAGTCAAAGTCGTTAGTCAGATGGGAAAAGTACGAT
ACGATGGACAACGGTTAGACGAGCGAAGAGGCAGACAATATTCCCCGGGC
AAGCAGAGTCAAGCTTGA

Synonyms

Publications