rna8285, rna8285 (mRNA) Nannochloropsis gaditana

Overview
Namerna8285
Unique Namerna8285
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1608
Alignment locationKK037248.1:277340..278653 +

Link to JBrowse

Properties
Property NameValue
ProductNicotinamide N-methyltransferase, putative
Orig transcript idgnl|cribi|Naga_100067g1.2689.mrna
Orig protein idgnl|cribi|Naga_100067g1.2689
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:277340..278653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100067g1gene8025Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8285rna8285-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22401.1cds8261Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8285 ID=rna8285|Name=rna8285|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp
ATGTCGCAAATTTGCGGTATCTTCCAGAGAATACCACGTTCGTATTTCAC
TTCAGCCCGGCCTGTTCAGAGACACGTTGCTTCGAGCTCCTCCATTTTAC
ACCGCCATTTCAATCATGCGACCGGTCCTATGAGTAATCTTAACGAGGCT
CTGCTTGCGCCCAGCGTCACGACAAGCCGGTCAACAGTCTCTAAGACCCT
CAAAAAGGACCTGAAATCCATCGAAAAACGGCTTGCTCGTTTTGGCATGG
ATACTGTCCCGTCAGACGTGCCTCCCACGAAGCCCTTGAGCGAATTGCAA
GCACCCGTCACAAAAATCACCACGCTGGACAACGGTTTACGAGTTGCCAC
GCAAGAGACATACGGCGCGCTCTGCACTTTCGGTGTGGTGGTAGATGCAG
GCAGCCGCGACGAATTGGCAGGGCGGGAGGACGGCGTGTGCCACCTGTTC
GAGGCCACGGCTTTCCGGGGCACGGAGAAGAGGAGCCACAAGGAAGTAGT
CAGCGCTTTGGACGACCTGGGTGCGATTCCCACGGCCAACTCCTCGCGTG
AACAGATGCTTCTATCCATCGACGTGTTGCGGAACTCCCTTCCCGAGGCT
CTTGAGATCTTCGGGGACGCAGTTCTCAATCCGAAAATAGACGCGCAGGA
TATCGAAGAATCCAAGACTATCCTAGGCCTTCATTTGGACAGCATAGCGC
CCGAGCTCCTGGTCAAGGAGGCCATACAAGAGGCGGCGTACCCTGGACAG
GCGCTGGGTAGGCCGCACTTCGTGACGCCTGAGACTCTGCCGAGGCTCAG
CGCCGAGGGACTCAAGGCATTCCAGACGCGGCATTTTACGGCGAGGAGCA
TGGTGCTGGCCGCGGCGGGTGTGGAGCACGAAGCATTTGTTGACCTTGCG
AAAAAGCATTTCGGGCGCTTGCCGGCAGGAGAAGGCGCTCACAAGCGCGC
ACGGGCCCTTTATCAGGGGGGCGAGAAGCGGATTGAGCAGCCTGACAGCA
TAGACCCATTTACTCGCGTGGCCGTGGGCTTCGAGGTGGCGGGATGGCAT
GACAAGGACCTGGTAGCCATGTGCGTGATGCAAATCCTCCTGGGTGGTGG
GGACTCTTTCTCCGCAGGCGGGCCTGGGAAAGGCATGTACTCACGGTTAT
ATAGGGAACTTTTGAATCGGTACTACTGGGTAGAGGGAGCCGAGGCCTTT
GTGAACCTTCATAATGAGACGGGGGTCCTGGGGATTGCAGGTGCCTGCGA
GGCCGCTCGTGCCGGTCAGCTCATGCACGAATTCTGTGCGCAAATCTGCA
AACTCGCCTTGACGCCGGTTGATCCTGTAGAATTGTCCCGGGCGAGGAAC
ATGCTGAAGTGCAATGTCTTGACACAGCTTGAATCTCGAATCATTCTCTT
CGAAGACATTGGCCGGCAGATGATCACGTACGGGCATCGCGAGGCTCCTG
AGGCCTTGTGTCGCAAGATTGACGAGGTCAAGGCCGAGGATTTGATGAAA
ATAGCGCGGCGGGCCATTTCAAAGCCGGTTTCCATCTCAGCGGTTGGAAA
AGATTTGAGGACAGTGCCCAATTATGAGCAGGTACTACAGTGGTTTGCTC
AGTCATGA
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protein sequence of rna8285

>rna8285-protein ID=rna8285-protein|Name=rna8285|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MELSRVLFHLFVSTQRGLVNQAAINGHVDVRKAVQDSCAVMDRDECFEYV
YGAAREGTDKVHDCVRVRLHGWKKELGQQLECTGLTMWRAGEDLGRYLWE
NRAMLFKQGQGRQRILELGCGLGLCGLVAAQLNPKGVVVLTDGDALTMQK
VCRNIDENSLKNRCCVAARTLQWGENKKIISEFKEGFDLVLAADVIYEEK
AIGPLLSTVTATLRKGQDALFLLSYARRNVSIDRVLAAASSMGLTCEVDD
KFSCSAEGEHVYRMRLQRKEEGIIQVAPSTAD
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mRNA from alignment at KK037248.1:277340..278653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8285 ID=rna8285|Name=rna8285|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp|location=Sequence derived from alignment at KK037248.1:277340..278653+ (Nannochloropsis gaditana)
TTTGTATCCATCTCTTTCATTCACAATGAGATTGTCGATTCTATAATATC TGTAAGTCTTGGTCACAAAAAGTCGCACGGAACAAAGAGCTACTTTCTAA TCCAATGGGTACTATCGAATTCTGAATAAGATATTCTACACAATTTCTCA TACCGAAACCAATGCATTCACGCAATATATGTGGTTTCTCAATTTTTTTT CGGGAGatagaaaggaagaaagcgttCATTATTACTACAATGCAGcagca agacgaggaggcacTTGGGCTCTCCAACGAAGCCCTGGGCGCATTGACTG ACTTTGCTGTTCAGGTACAAACCACCCGACCTCTCATAACATGCAAGCAG CATGGAGTTAAGTCGTGTCTTGTTTCATTTGTTCGTATCCACGCAGAGAG GCCTCGTGAACCAGGCTGCGATCAACGGTCACGTGGATGTGCGCAAGGCA GTACAAGATAGTTGTGCGGTGATGGACCGCGACGAATGCTTCGAGTATGT ATACGGAGCTGCGCGAGAAGGCACTGACAAAGTGCATGATTGTGTTCGGG TGCGATTGCATGGTTGGAAAAAAGAACTGGGGCAGCAATTAGAGTGTACA GGACTGACCATGTGGCGGGCAGGCGAGGACCTTGGCAGATATTTGTGGGA AAATCGTGCCATGCTATTCAAACAAGGTCAAGGCCGTCAGCGCATTTTGG AGCTTGGGTGTGGTTTGGGGCTTTGTGGCCTTGTAGCAGCACAGTTGAAC CCCAAAGGCGTGGTAGTGTTGACTGATGGGGATGCCCTGACCATGCAGAA AGTTTGCAGAAACATTGATGAAAACTCACTTAAAAATCGTTGTTGCGTCG CGGCACGAACATTGCAATGGGGTGAAAATAAGAAAATCATCAGTGAATTT AAAGAGGGATTCGATTTAGTATTGGCAGCAGACGTCATATACGAAGAGAA GGCTATTGGGCCTTTGCTCTCAACGGTTACGGCGACTCTTAGGAAAGGGC AAGATGCTCTGTTTCTTCTATCTTATGCTCGAAGGAATGTAAGCATCGAT CGAGTTCTGGCAGCCGCGTCGTCAATGGGGTTGACGTGCGAAGTGGACGA CAAATTTTCTTGCAGTGCCGAGGGTGAGCATGTGTACAGGATGCGCTTGc aacggaaggaggaaggaattaTTCAGGTTGCACCCAGTACAGCGGATTGA AAGTTGTTGCAAAGAGAGGCTGTTTGAAATGTGCAGAAAATCCACTCGAC AAAGAACACGTGTGAGAAATGGTGGAAAAGGCGTCTGACAGAAAAATTCG CGCGTTCGCTTTGC
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Coding sequence (CDS) from alignment at KK037248.1:277340..278653+

>rna8285 ID=rna8285|Name=rna8285|organism=Nannochloropsis gaditana|type=CDS|length=849bp|location=Sequence derived from alignment at KK037248.1:277340..278653+ (Nannochloropsis gaditana)
ATGGAGTTAAGTCGTGTCTTGTTTCATTTGTTCGTATCCACGCAGAGAGG
CCTCGTGAACCAGGCTGCGATCAACGGTCACGTGGATGTGCGCAAGGCAG
TACAAGATAGTTGTGCGGTGATGGACCGCGACGAATGCTTCGAGTATGTA
TACGGAGCTGCGCGAGAAGGCACTGACAAAGTGCATGATTGTGTTCGGGT
GCGATTGCATGGTTGGAAAAAAGAACTGGGGCAGCAATTAGAGTGTACAG
GACTGACCATGTGGCGGGCAGGCGAGGACCTTGGCAGATATTTGTGGGAA
AATCGTGCCATGCTATTCAAACAAGGTCAAGGCCGTCAGCGCATTTTGGA
GCTTGGGTGTGGTTTGGGGCTTTGTGGCCTTGTAGCAGCACAGTTGAACC
CCAAAGGCGTGGTAGTGTTGACTGATGGGGATGCCCTGACCATGCAGAAA
GTTTGCAGAAACATTGATGAAAACTCACTTAAAAATCGTTGTTGCGTCGC
GGCACGAACATTGCAATGGGGTGAAAATAAGAAAATCATCAGTGAATTTA
AAGAGGGATTCGATTTAGTATTGGCAGCAGACGTCATATACGAAGAGAAG
GCTATTGGGCCTTTGCTCTCAACGGTTACGGCGACTCTTAGGAAAGGGCA
AGATGCTCTGTTTCTTCTATCTTATGCTCGAAGGAATGTAAGCATCGATC
GAGTTCTGGCAGCCGCGTCGTCAATGGGGTTGACGTGCGAAGTGGACGAC
AAATTTTCTTGCAGTGCCGAGGGTGAGCATGTGTACAGGATGCGCTTGca
acggaaggaggaaggaattaTTCAGGTTGCACCCAGTACAGCGGATTGA
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Synonyms
Publications