rna8277, rna8277 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8277
Unique Name	rna8277
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3019
Alignment location	KK037248.1:259894..261667 +

Link to JBrowse

Properties


Property Name	Value
Product	aldo-keto reductase
Orig transcript id	gnl\|cribi\|Naga_100011g89.3484.mrna
Orig protein id	gnl\|cribi\|Naga_100011g89.3484
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:259894..261667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g89	gene8017	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8277	rna8277-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22484.1	cds8253	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:259894..261667+
coding sequence from alignment at KK037248.1:259894..261667+

mRNA sequence

>rna8277 ID=rna8277|Name=rna8277|organism=Nannochloropsis gaditana|type=mRNA|length=3019bp
GGGAGTACGCGCAAAGGGCAATGCCCTGGGAGTGGAGGAAGGCGCGCATC
TCGTCCTGCGGGAGGTAGGGGTGGCACTCGATCTGCACACAGACCGGCTT
GATTCGAGCCACGTCCAGGATCTCTTGCACTTCTTGCTCGTTGAAGTTCG
ACAGCCCTATCGTTTCCACCAGGCCTGCGTCCACCAGCTTCTCCATCTCC
TTCCACACGGCTTTGTTGTCGCCGTTCGGGTCGCTTAAATGCCGGCCCTG
GGCGTCCTTGGGCCACAAATTTTCCTCTCCCTTCACTTTCTGGAACGCGG
TTGGCCAGTGGATCAAGAGCTGTTGGATCTTCGGTAGTTTCAGTTCCCGC
AAAATCCGGTCGCAGGCGGGCCGCACCGCATCGGGGTGGTGGTCCGTGTT
CCACAGCTTGCTTGTAATCCAGACGTCATTCATCTCTTTGATATATCCCT
TCGCTCGCGCCTCATGCAGCCCCTCTCCAACCTCGCATTGGTTCTCGTAC
ACCTGAGCTGCATCTACATGGATGTAACCCAGGCGCAAGGCCTCCACGAC
TGCGTCTTTAACCTTGCCTTTGTCAGATCGCCACGTACCCAATCCCAGGA
CTGAAAAACACACATGAAACGTCGGAAAGATTGATCAGAAAAATTCTATG
GGAGTAATGCCCACCCCGATCCCCCCTCCACTTACTTGGCATGTTGGCGT
GTGGATCACGCGAAGTAATAGAAAGCTGCGTCGCCATGATGTGGGCGTGC
TTGAATACCAGTGATGGTGCCTGTCGTGGCCAGGTCAGAAGCAATACGAG
GAAAAGGGACCCGAAGAGAGGACGAGGAATCATTTTCCTGAATGAGGGTC
AATCGGGAGGTGGAATGAGGAAAAAAAAAGTCCCCGTGTGCACGTGTGCG
TGTGCCGTGCGCGAGACGCCCCATTGTTGTTGCCATGCAGTCGGACATGG
AGGCCATAGCGACCTGGAGCCGGGAGGTTAACTCCGTATGTGATGCACTT
CACAGCCTCTGCGATGCCCGCAGACACGCTCTATCAAGCTATGCCCCTTC
CTGGCGACCTTGCACTTCGTGTTTGTATTCCAAAACATACTTATCGTCTA
ATGTCCTTAGCATCGTCTCAAAAAGGAATGATCAAGGCCTGAAAACGCGT
ATAAATAGCGCTAGCCGTTGCCAGATGAAGCGTTTGAACGTACTTTCCTC
CATTGTCTGGCGCTCTGGACTGGGAGGCGTCACCTGTTACACAGCAACTA
TACCCCACTATGGCGCCACCAATGGGGCGTTTTCCTTCTGCGCTAGCAGC
ACCAATAACATGGCAGACGGTGCCTCCTCACAGGCCTCTGGCGGAGACTC
AGAAGCGGAGAGCCGGGAAAAGAGTAGGAGTTCTGTCAGCCACCCGGCCT
TTACAAAAGTCAAAGGGAGCAAGACCACGCCATCTTCGATAGACATTCCG
CCTGATAAACTCTCTCTGGAAAAGGTTCTGGCGGACATGAAGGAGGCAAG
CCGGGCAATGGGGGGGACGCTGAGGGGAGAGGAAGCCCTCGCCTTGATGG
CCTTGCTGGCTCGCGAAACGGTCCATCGGCAGACAAACGCCCACCGGGAC
TCTACACGCCCGCAGCATCTGTCTTCCTCGTTGACATTTCCGCCTTTGTC
GGGAGCGAGGCGTCGACGGAGAGCGAAGCAATTCCTGGAGTACGCGGTGT
TGTGCGAGAACGCCTACGATTTCTCGGAGGGCAAGGATTGGCTCGAGCCG
CCCGCTGGTTTCGAGAGCGTGTCTCGGTGGGACTTGCTCTCCTTTCACAA
GGGCGGGGTGTGCATTCCTCGCCATGTGGTCCTGCGCGTGGATGGTGGCG
AGGGCACAAGACATCGGCGCCGGAAAACGCGCGTGCTGGTGGTGGTGAGG
GGAACCGCCGAGGTCACGGATGCAGCCATCAACATAGCCATGGTGCCAGG
AGGCTGGACGCACCGGGGGAAGGAGTACCAGTGCCACCAGGGGATCGTCG
AGTCGGCCGAGTTTCTGGCGCGCATGGCCCGGCCCGTGGTGTGGCGCGCC
TTGGAGGGCCTGCGACAAGAGGGGGGGGACCCGGGCAGCGAGGTGGAGGT
GGTGCTGACAGGGCATTCCCTCGGAGGCGCCACGGCGGCCGTAGCGGCCC
TGAAGCTCCAGGGCGAGTTCGGTCCCCGCGTGCCCGTCAAGAGCGTGGGC
TTCAGCACCCCGGCCAGCCTCGCCATCGACCTGGCCTCCGCCCCCGCCAC
CCGGCGCGTCGTCACCACGCTCGTCCAGGGCGCGGATGTGATCCCCCGGT
GCTCCACGCGCAACCTGCAGGAGCTCAAGCGCCGGGCCCAGAACGTGCTT
GTGGAGGAGGAGGTGGAGTCGATCAAGCAGATGGTGCGGGAGGAGCTGGG
CCGACGTGGAGACGCTTGGGGCCGGGAGCTGACGGGCCTGCTCCTGTCCA
CGGCAGAGGGGGCCACGCAGCAGCTCCCGGGGGCCTGGCGGGACATGCTG
CCTCCCATCTTGAAGGCGGAGGGTCGGGAGACGCAGGGCGTGGGCGGGCT
CAAGGCGGCCTTCGGGGGGATCTTGGCGCGGTACCTCCCGGCCTTGGCCC
CGGAAGGGGGGGGCGGCGAGGACAAGGAAGAGGGCGCAGACGGGGGGGAG
GGGAACCGGTCCAGGGGGGTCAACGCCACGGAGAGAAGCAGGGATGATGG
GCACACGGCCCTCGAGGGCGGGGCAACGCTCTCCACGGAGGCGAGGCGAA
GGCTTGAAGAGGTTCTGGGCGAATACCAGGCCGTCCTGGACGCGGAGATC
GCCTTCGCCAAAGACCAATTGGAGCGCATCAAGCGCCAGACCTTCCAGTA
CTACCTGCCATCGTCCTTGGCACCTCCAGCGGTGTCGGACGGAAGGGGAA
AGGAGCTTACCCACGGCCAGGAGGGGGGGAAGGAGGTTATGGAGGGAGTA
CAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
ACGGGGGGGGGGTCTTTAA

protein sequence of rna8277

>rna8277-protein ID=rna8277-protein|Name=rna8277|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MIPRPLFGSLFLVLLLTWPRQAPSLVFKHAHIMATQLSITSRDPHANMPI
LGLGTWRSDKGKVKDAVVEALRLGYIHVDAAQVYENQCEVGEGLHEARAK
GYIKEMNDVWITSKLWNTDHHPDAVRPACDRILRELKLPKIQQLLIHWPT
AFQKVKGEENLWPKDAQGRHLSDPNGDNKAVWKEMEKLVDAGLVETIGLS
NFNEQEVQEILDVARIKPVCVQIECHPYLPQDEMRAFLHSQGIALCAYSP
LANLDPNDASKPCALRDPVIERLARKHGKSPAQVILRWHAQKKNVVIPKS
VTLSRIAENAGIYDFELSEEDMALIAGMGKTHRVRLVNPGFRPGGQPVFS
Q

mRNA from alignment at KK037248.1:259894..261667+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8277 ID=rna8277|Name=rna8277|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at KK037248.1:259894..261667+ (Nannochloropsis gaditana)
TAACAGGTGACGCCTCCCAGTCCAGAGCGCCAGACAATGGAGGAAAGTAC
GTTCAAACGCTTCATCTGGCAACGGCTAGCGCTATTTATACGCGTTTTCA
GGCCTTGATCATTCCTTTTTGAGACGATGCTAAGGACATTAGACGATAAG
TATGTTTTGGAATACAAACACGAAGTGCAAGGTCGCCAGGAAGGGGCATA
GCTTGATAGAGCGTGTCTGCGGGCATCGCAGAGGCTGTGAAGTGCATCAC
ATACGGAGTTAACCTCCCGGCTCCAGGTCGCTATGGCCTCCATGTCCGAC
TGCATGGCAACAACAATGGGGCGTCTCGCGCACGGCACACGCACACGTGC
ACACGGggactttttttttcctcattcCACCTCCCGATTGACCCTCATTC
AGGAAAATgattcctcgtcctctcttcgggtcccttttcctcgtaTTGCT
TCTGACCTGGCCACGACAGGCACCATCACTGGTATTCAAGCACGCCCACA
TCATGGCGACGCAGCTTTCTATTACTTCGCGTGATCCACACGCCAACATG
CCAAGTAAGTGGAGGGGGGATCGGGGTGGGCATTACTCCCATAGAATTTT
TCTGATCAATCTTTCCGACGTTTCATGTGTGTTTTTCAGTCCTGGGATTG
GGTACGTGGCGATCTGACAAAGGCAAGGTTAAAGACGCAGTCGTGGAGGC
CTTGCGCCTGGGTTACATCCATGTAGATGCAGCTCAGGTGTACGAGAACC
AATGCGAGGTTGGAGAGGGGCTGCATGAGGCGCGAGCGAAGGGATATATC
AAAGAGATGAATGACGTCTGGATTACAAGCAAGCTGTGGAACACGGACCA
CCACCCCGATGCGGTGCGGCCCGCCTGCGACCGGATTTTGCGGGAACTGA
AACTACCGAAGATCCAACAGCTCTTGATCCACTGGCCAACCGCGTTCCAG
AAagtgaagggagaggaaaattTGTGGCCCAAGGACGCCCAGGGCCGGCA
TTTAAGCGACCCGAACGGCGACAACAAAGCCgtgtggaaggagatggaga
agctGGTGGACGCAGGCCTGGTGGAAACGATAGGGCTGTCGAACTTCAAC
GAGCAAGAAGTGCAAGAGATCCTGGACGTGGCTCGAATCAAGCCGGTCTG
TGTGCAGATCGAGTGCCACCCCTACCTCCCGCAGGACGAGATgcgcgcct
tcctccactcccaggGCATTGCCCTTTGCGCGTACTCCCCCTTGGCGAAC
CTGGACCCCAACGATGCGAGTAAGCCGTGCGCGCTCCGAGACCCCGTGAT
TGAGCGGTTGGCCCGTAAGCACGGCAAGAGCCCCGCACAGGTGATCCTCC
GTTGGCACGCTCAGAAGAAGAACGTGGTCATCCCCAAGAGCGTCACCCTC
TCGCGCATCGCCGAGAACGCGGGCATTTACGACTTTGAACtctccgagga
ggacatggccctGATCGCGGGGATGGGCAAGACGCACCGGGTCCGTTTGG
TCAATCCGGGCTTTCGACCGGGGGGGCAGCCCGTCTTCAGTCAGTAGGcc
ctcggagggaggggacggggagagcgCACGCGCCCGGGCATAGACATGGG
GCACAAATCTAGAAAATGTTCCCGAATACATGAAGCGGCggtgcaggtgg
tggaggtggatgtgGAGATCGTCCTTTTAGGCTCAAAGGCATATCCGAGA
GAGATGAACAATGATCAATGATTCGAACAGACTTTAACCGCGCGATCCAT
GCGATGCTCGCATACGTATTCTTT

Coding sequence (CDS) from alignment at KK037248.1:259894..261667+

>rna8277 ID=rna8277|Name=rna8277|organism=Nannochloropsis gaditana|type=CDS|length=2112bp|location=Sequence derived from alignment at KK037248.1:259894..261667+ (Nannochloropsis gaditana)
ATgattcctcgtcctctcttcgggtcccttttcctcgtaTTGCTTCTGAC
CTGGCCACGACAGGCACCATCACTGGTATTCAAGCACGCCCACATCATGG
CGACGCAGCTTTCTATTACTTCGCGTGATCCACACGCCAACATGCCAATC
CTGGGATTGGGTACGTGGCGATCTGACAAAGGCAAGGTTAAAGACGCAGT
CGTGGAGGCCTTGCGCCTGGGTTACATCCATGTAGATGCAGCTCAGGTGT
ACGAGAACCAATGCGAGGTTGGAGAGGGGCTGCATGAGGCGCGAGCGAAG
GGATATATCAAAGAGATGAATGACGTCTGGATTACAAGCAAGCTGTGGAA
CACGGACCACCACCCCGATGCGGTGCGGCCCGCCTGCGACCGGATTTTGC
GGGAACTGAAACTACCGAAGATCCAACAGCTCTTGATCCACTGGCCAACC
GCGTTCCAGAAagtgaagggagaggaaaattTGTGGCCCAAGGACGCCCA
GGGCCGGCATTTAAGCGACCCGAACGGCGACAACAAAGCCgtgtggaagg
agatggagaagctGGTGGACGCAGGCCTGGTGGAAACGATAGGGCTGTCG
AACTTCAACGAGCAAGAAGTGCAAGAGATCCTGGACGTGGCTCGAATCAA
GCCGGTCTGTGTGCAGATCGAGTGCCACCCCTACCTCCCGCAGGACGAGA
TgcgcgccttcctccactcccaggGCATTGCCCTTTGCGCGTACTCCCCC
TTGGCGAACCTGGACCCCAACGATGCGAGTAAGCCGTGCGCGCTCCGAGA
CCCCGTGATTGAGCGGTTGGCCCGTAAGCACGGCAAGAGCCCCGCACAGG
TGATCCTCCGTTGGCACGCTCAGAAGAAGAACGTGGTCATCCCCAAGAGC
GTCACCCTCTCGCGCATCGCCGAGAACGCGGGCATTTACGACTTTGAACt
ctccgaggaggacatggccctGATCGCGGGGATGGGCAAGACGCACCGGG
TCCGTTTGGTCAATCCGGGCTTTCGACCGGGGGGGCAGCCCGTCTTCAGT
CAGTAGATgattcctcgtcctctcttcgggtcccttttcctcgtaTTGCT
TCTGACCTGGCCACGACAGGCACCATCACTGGTATTCAAGCACGCCCACA
TCATGGCGACGCAGCTTTCTATTACTTCGCGTGATCCACACGCCAACATG
CCAATCCTGGGATTGGGTACGTGGCGATCTGACAAAGGCAAGGTTAAAGA
CGCAGTCGTGGAGGCCTTGCGCCTGGGTTACATCCATGTAGATGCAGCTC
AGGTGTACGAGAACCAATGCGAGGTTGGAGAGGGGCTGCATGAGGCGCGA
GCGAAGGGATATATCAAAGAGATGAATGACGTCTGGATTACAAGCAAGCT
GTGGAACACGGACCACCACCCCGATGCGGTGCGGCCCGCCTGCGACCGGA
TTTTGCGGGAACTGAAACTACCGAAGATCCAACAGCTCTTGATCCACTGG
CCAACCGCGTTCCAGAAagtgaagggagaggaaaattTGTGGCCCAAGGA
CGCCCAGGGCCGGCATTTAAGCGACCCGAACGGCGACAACAAAGCCgtgt
ggaaggagatggagaagctGGTGGACGCAGGCCTGGTGGAAACGATAGGG
CTGTCGAACTTCAACGAGCAAGAAGTGCAAGAGATCCTGGACGTGGCTCG
AATCAAGCCGGTCTGTGTGCAGATCGAGTGCCACCCCTACCTCCCGCAGG
ACGAGATgcgcgccttcctccactcccaggGCATTGCCCTTTGCGCGTAC
TCCCCCTTGGCGAACCTGGACCCCAACGATGCGAGTAAGCCGTGCGCGCT
CCGAGACCCCGTGATTGAGCGGTTGGCCCGTAAGCACGGCAAGAGCCCCG
CACAGGTGATCCTCCGTTGGCACGCTCAGAAGAAGAACGTGGTCATCCCC
AAGAGCGTCACCCTCTCGCGCATCGCCGAGAACGCGGGCATTTACGACTT
TGAACtctccgaggaggacatggccctGATCGCGGGGATGGGCAAGACGC
ACCGGGTCCGTTTGGTCAATCCGGGCTTTCGACCGGGGGGGCAGCCCGTC
TTCAGTCAGTAG

Synonyms

Publications