rna8271, rna8271 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8271
Unique Name	rna8271
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3066
Alignment location	KK037248.1:239952..242642 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g83.3459.mrna
Orig protein id	gnl\|cribi\|Naga_100011g83.3459
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:239952..242642 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g83	gene8011	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22459.1	cds8247	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8271	rna8271-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:239952..242642-
coding sequence from alignment at KK037248.1:239952..242642-

mRNA sequence

>rna8271 ID=rna8271|Name=rna8271|organism=Nannochloropsis gaditana|type=mRNA|length=3066bp
ATGACAATCTCAATGTCGCCAGCACAGGAACCCCGGACGGTGCCGTTGGT
GTCCCGCCGAGTCACGCCAACATCTCGTCATTTACCTTCGAGCCCCCCGT
CTCCTCCATCCGCTGCCAAACTCGCAGCAACCAGGCCAATAAATACCCTC
GCCCTTTCTGATGGACGAAGGGATGATGTCAAATGCCCCTATAAATGTCG
TGCTCCCCCTCTGTTGATAGGCCTGGGAGATTCTGGACGTGTCCATGAGC
ACAGGACAGAAGAAAAACCACCTTCCCTCCCAGAGCGAGAGACGGTTGAG
AGGCTGCAGCGAAAAGTTTCCCGACTGGAGACCGAAAACTTGTTGCTGCG
GCAGCAAATGAAATTGCATCTACCAAACGCATCCTGGTCGAAAACTCCAT
CACCCTTTGCGCTGCAGGGCACTTCTGCGATGTCGGCCTCTAACACTCTC
GCAACAAAGGCGTGCGAGCGCTATCAAGAGAGCGTGTCATCACCCTCCTC
GACTTCCTCTTCAGCGTCGCCAAAGTACCCTCTCGGTGTGTCTCGATTTT
CCTGGCCACCTGGAAGGAGTATGAAGGAATGCGTGCAGGAGGGCGAGCGT
TCAGATGATCCGGGCTTCCCAACTGGCGGCGATGATACCCGGGTTCAGTT
TGGGACTCCTCGACGCACGGCCAAGATCATGATGGGCGCAGCAAGCCGAG
GTGCAACACGAACTTCCATGTCGCCGGCGGCAGTGCTGTCCTCGACCCCA
TTCAGTGAGTTTGCCATCGTCGGTATCCAGGAGAGCATCCTAAAGGGGGA
GGTGTCCCCCGCCCCTTGTATGCAGCCTGTAGAGGCGATGGAGGTCGTGA
TGGGTGAAAGCCCAGAGGAAGAAGCCAAGCCTAGGGAGCTGAGCCGGATC
AGTGAATTTTGCTTCCCTCAGGGCGGGCGCCTAGATCTCGCGCCTGCGAC
GCAGATAAATGTGTGGACCGGGACGCATCGCGACCAGACCCATGTTCTCC
AGTTCACGGACGAGCAAGGCGCCACGTCTTATGGCGTTTGCTTGACCATC
TACGAGGCGCGTGTCGACTGTCCTCCGTCGCTGATTAAGGCCTTGCAGGC
GGTGCGGAGGAAGCACGCGGCAGCGCGGACGCTGCAGTACTTTGTCAGGC
GGCGCGTTGGTCTCTCATCGAGGAGTAGCAAGACGCTCCGCCGTAGCAAG
AGCAGCCGAAGCAGGAGCGGCAGCTACAGCTACAGCGACACAAACAGTGC
TATCGTCAGATCCAAGACTAGCGTCGTTGCTTGCCAGGCTGCAGGCAGCG
ACCTTGCGGGCGTCATTGACGAAGGTAAAGGTGCCCGCCGAGGGCTCCTG
GACCATGTCAGGACCGGCATGCGCAAGCTACAGCAAGGCGGTGGATGGGG
CACGCCCAGGGGGGATCGCCAGCGGACTAGAAGTCGAGCAATGAGGCTGG
AGGGACAGGATTGGGAGCGGTCGCAGCTGGGTAGGGAAGTGTCGGGGGAT
GTGGATGAGTACCGCCGACTCGTTCGCGCCACCGAAGCTTTGTGGGGGAG
TGCTGTGGTGTCCACCTGCCGCTACGGGGTTTCGCCTACTTACAAGCTAT
ATTGCCAGCAGGAGCGAGAGGAGATAGATTTTGTGGTGGTGGCGCCGCGG
TGCTTCTGCCTGATCAGCCACCAACCCAATCATCCCCTCCTGTGCAAACT
CTTGTCTATCATTGTCGAACGGGAGCGCACACAGCCGCAGAGGGAAAACG
TGCTGTCCGCGTTGAAGCGACGACGCAGCTGCAATGCGCTGTCACTTGCA
TGCTCGCCCTCTGGCAGCCTATGTTCATCCCCCACTGTTGCGGGCACCTT
GATGGAGAAGCACGCAGGCGAGGTCGCAAGCGGAGGGGGCGTGGGAGCCA
TGGGCGGAGCAATCTATTACGCTCCCGATGGGGGACACTGCAGTGGCGAC
GACGATCTAGTTTCTTCGCGGCGACGGTTTTTGCGGTATATCCAGCATGA
TGTGGTCTTCCCATCCACAGGGATCCTCACGCTCTCTTTTCCCCCGTACG
CCCCCTCGACAACCCGCCTGGACCTCCCTCTTGTGCCACTGCAAGACTGG
ACTGTAGCAGTGCTTTTCTCGCACGTCTCGGTGGATGTGATCATCAAGTG
CGTCAATCTTCTCCTCCTTGAGCAGAGCCTGGTTGTTATAGGCGAGGACC
AAGGACTGGTAAGCGCGATTAGTACGGCTTTCGTCAGCCTCCTCCAGCCT
TTCAAATGGGACGGGGTCTTCATTCCTCTGCTTCCAACAGCCTTGAGCGA
CATTCTCCAGTCTCCGGTGCCCTTTGTGCTGGGCGTTCAACCTCCTTTCG
ACCCCACTCGTAGCACTCCTCACGCCGCCGCCTTGCACATCGGCCGCTGT
AAGGAGCACCTTCGTCTTCCCGATCTGACCGTCAAGTTGCCCCTCTGCTA
TCAGCTGTTGCAAGCTCTCAAACAAGCGTCAAAGCTTTTCTCTTGTCGTC
GGTCCAGGTGGGCGAATCTTCATTTAGCCACTTATATGGCTGGACTCACA
GGAGACGAGAGACAGGCGTTGGCGTCCCTCCGAGGTATCTTTCATGAATA
CGTGCAAGGGCTTTGTGGAGACCTTGCCTATCCAGGGGCATGGAGGAAAT
ACGGAACTTTTGATAGCACCAGCGAAACATTCGAGTTCTTTCCGAGCTGG
TTCTTGGAGCCGATGCGGATGATGTTGGAGTATCAGAGTGCCTTCGTTCA
CACGCAGATGTTCTCCTCCTATGTCGACAAAAGAAGAATCGAGGACATGC
AAAAGTCTAGACAGAGCCAGCGATGTGGGGCCTTTTTGGCGACCTTTTTG
GCCTTTCGATACCGGATCAGGCGACTGCGGCGAATGTCTAGTTTTGCCGT
TCAAGTTCGCGAAGACGTGGGCAACTTCGGAGGCAACGAGTGGATGGCTG
AAGCGAGAGAAAGTGTGGCGAAGGAAAGTGAAGCGTCTACGGATGGGGTG
CGATATCCCTTTCGGGGCTATGTTGCGAGGCCATCGCCTTTGCGCATTGA
GGAAGAGGAACATTAG

protein sequence of rna8271

>rna8271-protein ID=rna8271-protein|Name=rna8271|organism=Nannochloropsis gaditana|type=polypeptide|length=896bp
MLFKHQLPGPVRSGVSTVLDVLVPASSPTSVYIAVTSGTSRLYVYRWDRF
LGVVEAPNAITSCRLVLMRGAIKPSVSLFIGCQPAAVFIVENLEATLTGI
DNNGKKKTPAGFLRLGVDQFRSVLPEKALKVISFEGGAVGTALTEDISSG
RDVFAVVETEAAMAVCCVSSSMQGDARLPFIILSGRHNCGRGPMLCTSTG
AHLLLVIHSRTQQQVSTTASQLYSAPLPGARSSLRSDAAPCPAGTLRKGF
ASKVIALVEFAAGEAKDVVIAVEETGWLSLLPVSHVEDMPENGKTHRVRL
RLGATDKRVRAAVVVGDFLACLSSRGVVWLTPLSNCFSKLPDEGPRWEES
MAVHCARLNCAPNVVAVAASPSSLLRPALFVLTQQGRLLCFQDLPFPPLS
SEPPLDAPVRVVEARCEEKASLQVEAILRRVEDACRRTQASHLELAKTEE
DLKRLRAAWAVAAGKGFLVASIDVTHASSPATIPAPSLKVRLQNATEDEA
FSLQGWSLMLRVEGAAPSMSPDPVGGLLRALSPPGAGVLVGASWPLPDLG
PREDFQAETPLPDTGSLLPLTARLSLCLPFLTSSPSARGDAGIAGISEQA
GLCLELGSRPLDMLDLAHPVKSVPATPSEVRALEVEARKQGRGPSWERCL
ARHLLADVLGKEGEGGAEIRNLSQREAPRGAEQGGMLGSSPRPLLSSTLR
ILWPVLSTGREHLQNFHGDAAPCAAPLPALADILGACDGARMSMKGQERT
LAIQAPEGEVLLARLLAGDMRVRMDESEGVEAMALQLKLYGTDQGLLSLL
RATCCQRLGPGASVRTRRLLLTDTRMKTLESVHHQLAALAAELQNGYDVR
NGKEETDRNRFGWKFDMARRTARLAVVLSREVDEAFLLDLRPDFHD

mRNA from alignment at KK037248.1:239952..242642-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8271 ID=rna8271|Name=rna8271|organism=Nannochloropsis gaditana|type=mRNA|length=2691bp|location=Sequence derived from alignment at KK037248.1:239952..242642- (Nannochloropsis gaditana)
ATGTTGTTCAAACACCAGCTTCCTGGACCGGTGCGAAGCGGGGTCTCGAC
AGTGCTTGATGTATTGGTCCCTGCAAGCTCCCCCACTTCCGTGTACATTG
CTGTCACGTCAGGAACTTCGCGTCTCTATGTTTATCGATGGGATCGCTTT
CTTGGGGTCGTGGAAGCGCCCAATGCGATTACAAGCTGTAGACTTGTCCT
GATGAGAGGCGCCATCAAGCCGTCTGTGTCCCTGTTCATAGGCTGTCAGC
CTGCTGCCGTGTTCATCGTCGAGAATTTGGAGGCCACGCTTACTGGCATT
GACAACAATGGTAAAAAAAAAACTCCCGCCGGCTTTTTGCGCTTGGGAGT
GGATCAATTTCGCTCTGTCCTACCTGAAAAAGCTCTCAAGGTCATCAGTT
TCGAAGGAGGGGCCGTCGGAACTGCTCTTACGGAAGACATTTCGTCCGGA
AGAGACGTTTTCGCCGTCGTGGAGACAGAGGCTGCAATGGCTGTGTGCTG
CGTCTCCAGCTCTATGCAGGGTGATGCGCGACTTCCTTTCATCATTTTGT
CGGGTCGGCACAACTGCGGGCGAGGGCCAATGTTGTGTACCTCGACTGGG
GCTCATCTCTTGCTTGTTATTCATTCAAGAACCCAACAGCAGGTATCGAC
GACTGCTTCTCAACTTTACAGCGCACCTCTCCCAGGGGCGCGCTCTTCAC
TACGAAGCGACGCCGCGCCCTGCCCGGCCGGCACGCTGAGGAAAGGGTTT
GCGAGCAAAGTCATCGCCTTGGTTGAGTTCGCCGCCGGCGAGGCCAAAGA
CGTGGTCATTGCTGTGGAGGAAACCGGATGGTTGTCCCTGCTACCCGTTT
CACACGTCGAGGACATGCCCGAGAACGGAAAAACGCACCGGGTTCGCCTC
AGGTTGGGAGCCACCGATAAGAGGGTCCGAGCCGCAGTCGTTGTGGGCGA
TTTCCTGGCCTGCCTATCCTCTCGAGGAGTTGTGTGGCTTACTCCCTTGT
CCAATTGTTTTAGCAAGCTGCCAGATGAGGGACCGCGCTGGGAGGAGTCG
ATGGCGGTGCACTGCGCGCGCCTAAACTGCGCCCCCAACGTGGTGGCCGT
GGCCGCCTCCCCATCATCTTTGCTCCGCCCTGCTCTCTTCGTCCTCACAC
AACAAGGTCGCCTCCTGTGCTTTCAAGACCTCCCGTTCCCCCCCCTATCC
TCCGAACCCCCTCTGGACGCGCCAGTCAGGGTCGTGGAAGCGCGGTGCGA
GGAGAAAGCCTCCCTCCAGGTCGAAGCGATCCTCAGACGTGTGGAGGACG
CCTGCAGACGAACACAGGCCTCTCACCTGGAACTGGCGAAGACCGAGGAA
GATCTGAAGAGGCTGCGGGCAGCCTGGGCCGTGGCTGCGGGCAAGGGTTT
CCTGGTCGCTTCGATTGACGTGACACACGCTTCCTCCCCTGCTACAATAC
CCGCCCCGAGCCTCAAGGTGCGCTTGCAAAATGCCACTGAGGACGAGGCT
TTCTCTTTGCAAGGATGGTCGCTTATGCTAAGAGTCGAAGGGGCGGCTCC
CTCCATGTCGCCTGACCCCGTGGGCGGCCTCCTCCGAGCCCTGTCGCCGC
CCGGGGCGGGGGTCCTGGTGGGGGCAAGCTGGCCCCTTCCAGACCTGGGG
CCGAGGGAAGACTTTCAGGCAGAGACACCGCTTCCTGACACGGGCTCTCT
TCTCCCGCTGACGGCACGCCTCTCGCTTTGCTTGCCTTTCCTGACTTCCT
CGCCTAGTGCTAGGGGAGACGCAGGGATTGCAGGAATTTCGGAGCAGGCT
GGCCTGTGCCTGGAGCTCGGCTCGCGGCCGTTGGACATGCTTGATTTGGC
TCATCCTGTAAAAAGTGTACCTGCCACTCCTTCAGAGGTGCGGGCCCTGG
AGGTGGAGGCCAGAAAGCAGGGCCGTGGTCCGAGCTGGGAACGGTGTCTG
GCGCGGCATCTGCTTGCGGACGTGCTTGGGAAAGAGGGAGAGGGAGGAGC
TGAAATTAGAAATCTCAGTCAGAGGGAAGCGCCCAGGGGCGCTGAGCAAG
GGGGTATGTTGGGGTCATCGCCGAGGCCCCTTCTATCATCGACACTGCGT
ATCTTGTGGCCTGTGCTTTCCACAGGGAGGGAGCACCTTCAAAACTTCCA
CGGAGATGCAGCACCATGCGCCGCACCGTTACCAGCTTTAGCCGATATTC
TAGGTGCATGTGACGGAGCTAGGATGTCAATGAAAGGGCAAGAGCGGACA
TTGGCTATCCAAGCTCCGGAGGGCGAGGTCTTACTCGCCCGTCTGCTGGC
CGGGGACATGCGGGTCCGGATGGACGAGAGTGAGGGTGTCGAAGCGATGG
CTCTTCAGCTAAAACTTTATGGTACAGACCAAGGCCTTCTTAGCTTGCTC
AGGGCGACATGTTGTCAACGATTAGGACCGGGAGCATCAGTGCGCACGCG
GAGATTGTTGCTAACCGATACGCGTATGAAGACGCTCGAATCGGTTCATC
ATCAGCTTGCCGCGCTTGCAGCAGAGCTACAGAATGGATATGACGTTAGA
AATGGGAAGGAGGAAACAGATCGGAACCGTTTCGGGTGGAAATTCGATAT
GGCGCGACGAACAGCAAGACTGGCAGTCGTGCTGAGTCGAGAGGTCGACG
AGGCTTTCCTCCTAGATCTGCGACCGGACTTTCATGATTGA

Coding sequence (CDS) from alignment at KK037248.1:239952..242642-

>rna8271 ID=rna8271|Name=rna8271|organism=Nannochloropsis gaditana|type=CDS|length=2691bp|location=Sequence derived from alignment at KK037248.1:239952..242642- (Nannochloropsis gaditana)
ATGTTGTTCAAACACCAGCTTCCTGGACCGGTGCGAAGCGGGGTCTCGAC
AGTGCTTGATGTATTGGTCCCTGCAAGCTCCCCCACTTCCGTGTACATTG
CTGTCACGTCAGGAACTTCGCGTCTCTATGTTTATCGATGGGATCGCTTT
CTTGGGGTCGTGGAAGCGCCCAATGCGATTACAAGCTGTAGACTTGTCCT
GATGAGAGGCGCCATCAAGCCGTCTGTGTCCCTGTTCATAGGCTGTCAGC
CTGCTGCCGTGTTCATCGTCGAGAATTTGGAGGCCACGCTTACTGGCATT
GACAACAATGGTAAAAAAAAAACTCCCGCCGGCTTTTTGCGCTTGGGAGT
GGATCAATTTCGCTCTGTCCTACCTGAAAAAGCTCTCAAGGTCATCAGTT
TCGAAGGAGGGGCCGTCGGAACTGCTCTTACGGAAGACATTTCGTCCGGA
AGAGACGTTTTCGCCGTCGTGGAGACAGAGGCTGCAATGGCTGTGTGCTG
CGTCTCCAGCTCTATGCAGGGTGATGCGCGACTTCCTTTCATCATTTTGT
CGGGTCGGCACAACTGCGGGCGAGGGCCAATGTTGTGTACCTCGACTGGG
GCTCATCTCTTGCTTGTTATTCATTCAAGAACCCAACAGCAGGTATCGAC
GACTGCTTCTCAACTTTACAGCGCACCTCTCCCAGGGGCGCGCTCTTCAC
TACGAAGCGACGCCGCGCCCTGCCCGGCCGGCACGCTGAGGAAAGGGTTT
GCGAGCAAAGTCATCGCCTTGGTTGAGTTCGCCGCCGGCGAGGCCAAAGA
CGTGGTCATTGCTGTGGAGGAAACCGGATGGTTGTCCCTGCTACCCGTTT
CACACGTCGAGGACATGCCCGAGAACGGAAAAACGCACCGGGTTCGCCTC
AGGTTGGGAGCCACCGATAAGAGGGTCCGAGCCGCAGTCGTTGTGGGCGA
TTTCCTGGCCTGCCTATCCTCTCGAGGAGTTGTGTGGCTTACTCCCTTGT
CCAATTGTTTTAGCAAGCTGCCAGATGAGGGACCGCGCTGGGAGGAGTCG
ATGGCGGTGCACTGCGCGCGCCTAAACTGCGCCCCCAACGTGGTGGCCGT
GGCCGCCTCCCCATCATCTTTGCTCCGCCCTGCTCTCTTCGTCCTCACAC
AACAAGGTCGCCTCCTGTGCTTTCAAGACCTCCCGTTCCCCCCCCTATCC
TCCGAACCCCCTCTGGACGCGCCAGTCAGGGTCGTGGAAGCGCGGTGCGA
GGAGAAAGCCTCCCTCCAGGTCGAAGCGATCCTCAGACGTGTGGAGGACG
CCTGCAGACGAACACAGGCCTCTCACCTGGAACTGGCGAAGACCGAGGAA
GATCTGAAGAGGCTGCGGGCAGCCTGGGCCGTGGCTGCGGGCAAGGGTTT
CCTGGTCGCTTCGATTGACGTGACACACGCTTCCTCCCCTGCTACAATAC
CCGCCCCGAGCCTCAAGGTGCGCTTGCAAAATGCCACTGAGGACGAGGCT
TTCTCTTTGCAAGGATGGTCGCTTATGCTAAGAGTCGAAGGGGCGGCTCC
CTCCATGTCGCCTGACCCCGTGGGCGGCCTCCTCCGAGCCCTGTCGCCGC
CCGGGGCGGGGGTCCTGGTGGGGGCAAGCTGGCCCCTTCCAGACCTGGGG
CCGAGGGAAGACTTTCAGGCAGAGACACCGCTTCCTGACACGGGCTCTCT
TCTCCCGCTGACGGCACGCCTCTCGCTTTGCTTGCCTTTCCTGACTTCCT
CGCCTAGTGCTAGGGGAGACGCAGGGATTGCAGGAATTTCGGAGCAGGCT
GGCCTGTGCCTGGAGCTCGGCTCGCGGCCGTTGGACATGCTTGATTTGGC
TCATCCTGTAAAAAGTGTACCTGCCACTCCTTCAGAGGTGCGGGCCCTGG
AGGTGGAGGCCAGAAAGCAGGGCCGTGGTCCGAGCTGGGAACGGTGTCTG
GCGCGGCATCTGCTTGCGGACGTGCTTGGGAAAGAGGGAGAGGGAGGAGC
TGAAATTAGAAATCTCAGTCAGAGGGAAGCGCCCAGGGGCGCTGAGCAAG
GGGGTATGTTGGGGTCATCGCCGAGGCCCCTTCTATCATCGACACTGCGT
ATCTTGTGGCCTGTGCTTTCCACAGGGAGGGAGCACCTTCAAAACTTCCA
CGGAGATGCAGCACCATGCGCCGCACCGTTACCAGCTTTAGCCGATATTC
TAGGTGCATGTGACGGAGCTAGGATGTCAATGAAAGGGCAAGAGCGGACA
TTGGCTATCCAAGCTCCGGAGGGCGAGGTCTTACTCGCCCGTCTGCTGGC
CGGGGACATGCGGGTCCGGATGGACGAGAGTGAGGGTGTCGAAGCGATGG
CTCTTCAGCTAAAACTTTATGGTACAGACCAAGGCCTTCTTAGCTTGCTC
AGGGCGACATGTTGTCAACGATTAGGACCGGGAGCATCAGTGCGCACGCG
GAGATTGTTGCTAACCGATACGCGTATGAAGACGCTCGAATCGGTTCATC
ATCAGCTTGCCGCGCTTGCAGCAGAGCTACAGAATGGATATGACGTTAGA
AATGGGAAGGAGGAAACAGATCGGAACCGTTTCGGGTGGAAATTCGATAT
GGCGCGACGAACAGCAAGACTGGCAGTCGTGCTGAGTCGAGAGGTCGACG
AGGCTTTCCTCCTAGATCTGCGACCGGACTTTCATGATTGA

Synonyms

Publications