rna8267, rna8267 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8267
Unique Name	rna8267
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2489
Alignment location	KK037248.1:230755..231784 -

Link to JBrowse

Properties


Property Name	Value
Product	Nicotinamide N-methyltransferase, putative
Orig transcript id	gnl\|cribi\|Naga_100011g79.3487.mrna
Orig protein id	gnl\|cribi\|Naga_100011g79.3487
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:230755..231784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g79	gene8007	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22487.1	cds8243	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8267	rna8267-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:230755..231784-
coding sequence from alignment at KK037248.1:230755..231784-

mRNA sequence

>rna8267 ID=rna8267|Name=rna8267|organism=Nannochloropsis gaditana|type=mRNA|length=2489bp
TGGTCGGGATGGTGTGCATGACCGTGTGAATTGCCAGTTTCCGATTTCTT
TGTGAAGTGGACTTGTGACTGGCAACGCGTGGATGCAGTGCACCGTTTTG
TGCGTCCCACTAACCTTCCCCTTATCTACCCCCTTAGGGGCCCCTGGGCT
CGGACGACGAGGCTCGTGTACAGCAAGTTGAGGCCGTCGACATACCACAC
CAGGGCCAAAACGACACCAATTTTTGGCATTAGCATAGGACGGGGGACAT
GAGAAGGAGACGGCAAAGGGCTGAGGAGCGTCGAAGATCATCTGCGCCGT
CATGTACGCGCATTCGAGTGCCAGCACAGCGGGTCTTACACAAGGCGCCG
CTTCCTTCACATGGAATGTTCCGGTCCCTCAACGGGCCTTTCCTGTATGT
GGTGCTGCTGCACATGCTTCTTCCCAGAGGTGCTGCCTTCGTTGCACAAC
TGCCATATCAATCCCATGTCGCGTGCGGAAGTCGGCCATGGACATGGACA
GCGGCAGGTCGGGCTTGGGAATCAGCCTCGCACTCCTCGCTGGGCGCCAC
TCGCGTAGCGGACGAGACAGTTCCATGGCAAGATGAGGGAGACCACGCGG
CGGTGGCGAGGAACATTACTGAGGCCTCAGCGGGGAGGGAGGCAAGGTTA
GCTCGGAAGGCTGCTCGTCGACGCCAGAGGCAGCTCCGTGTGGAGGGCCA
GGGCGGGGCGCATGAAGAGAGGGGCAACGTGGCCACCCGCTACATGCTCC
CTTCCCCGACCGAAGCGGGCCTAAGGACTCGTGATGGCCCCCGTTCCCGT
CTCGGCGCCCGGGGGCATGGAGAGAGCGCGGCGCCCGGGCTCACCCCCCC
CTCTCGACCTCACACGGTGGACCTATACGTGCCCTCGGCGGACTTGGACG
TCATGCTCGACTGGGCGGACCGGCTGCCCCCGGCGCTTGATAGGCCCGGC
GAAGCTGCAGGCTCGGGGGGGGGAAGCAGCCTGCCCTCTCTTCGCCCGCG
TGCGGCCCACCAACTCGTCTGGCTCGACAAGGAGCAGCGGCTCTTGGCAC
TCGCCCAGATGGTGATGGGGATGGAGAAAGTCCGGGCCGAGATGGTCGAG
AAGTCGGCCCCTGGCGAGGGAGCCCGAGGCATCACGACCAGGATGCTCGC
GGCGCGGCTGGGCCTCTCTCCCGAGGAGGCGGCGGCCTTTTACAAGCTGG
GTCTCAGGGCGCGGTCTTACATCCTCGTCTCCATGCACTCCCTCATTGCC
GCCTTGGCCCGCAAGTACGGAGCCACGTTCGGGGTGGACGAGGCAGAGCT
AGTGCAGGAGGGGTACAGGGGCGCGATGCAAGCGCTGGAGCGGTACGACC
GGGGCAAGGCCGAGGCGACCGGGGCCACCTTCCGTGCCTTCTCCTACTTC
TATGTCATGTCCGCCATGATCACGGCGGCACGGAAAGAACTCCATCTTGA
TGCGACCCCCTCGTCGACACGAAATGCCGCTTCGATGCGGCTGCCACCGG
GCACGCAAGGGCGGGGCGACGCGAGCTTCCTCCTGCCTGCCGGGACCGCC
GGGGCATTGCCGGCCGCAGCATCGGGACTAGGAGGCTCTCGGCCTGTGTC
CACGACGGAAATTCCACCTGAGCTTTTATGGAAGGACGTCAAGGCTAAAG
AGGATGACGGGGAATGGAAGCACGGGGCCGAGGAAGGGGAGGAGGAGGAC
CCTGAGGAGGCTGCCGAAGCCGCCCTCTACCGAAGGCCACTCCCTCGCCC
GGGACGACGGCCGCGACTTGGGCCGATGCGCCGCGTGACTCGCATGGGGC
CCGCACAGGAGGTAATCGCGGAGGCGGTGGGCGCAGGCAAGCAGGGGGCC
GGGGCCAGGGGGGACTTGGGTGTGGGCGGCCGGCGCGCAGAGCTGTTTGG
TGTGGACCCGGAGACGACTCGGCCCGCTTATGAAATTGTAGACGAGAGCA
AGCGGGCGTGGGAGCTTGGCATGTTCCTGCGCCGAGCTGCCCAGGAGCTC
TCGCCGCAGGACATGGAGGTGTTGTCCTTGCTCTACGGCTTGAAGGGCCA
CAGCCCCCTATCTCGCCCGCAAGTGGCGCGGAAGTTGGGCTTGTCGACCG
CGGTGGTCAGTAAGAGCGAGCGTCGGGCGTTGAAGAAGCTGAGAGAGATG
CTGAACATTGGCGTTGTCGAGTAGAGGGCGGGGGTTCGGAGGGTCGAGCT
CCCCCCAAAAGCCAAGGGCGCGCGGGACGGTCCCAAGGCTGGAGGGAGGG
AGGGACTTTGGTTGGTGTACATCGAAGTTAGTTAGAGTAGAGACAGGCGT
GCGCTCTTTTTTAATGATGACTGCCGCGTGAGGCAGTCTGAAAATTGAGA
CGACTTCCATGAAATTAATTGATCTAGACATCCCAGGGGGTGCCTTGAAA
ATGTATGATAGCATGTCTTTTGAAGAACCGACAGACTAATTAAAAAAATG
CAGAGGATTGGCAACCTGCAGAACGAAGTGATTTTCTCT

protein sequence of rna8267

>rna8267-protein ID=rna8267-protein|Name=rna8267|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MIYRDKVSNYENVDGDGEQDLTALGFLFDAAAAKAWVRHKFQAPTTGPFD
CHAEDKDLRSSIEVEVQVIADEDGPGALQTGQRTWPAAPFLAQYLVEHWA
GITFDRKCEVLELGAGCGLVGLTLAQLSGVDTIIMTDHDPGSLKLIQEGI
FRNQHRWRDGVRCEISHMEWGKELNRQIVSLVNIERVNAEHGSCKEGIML
LLVGSDLVYSLDVVESLFKTVADLFRHRDESGRGRGQFLLCGSFALGDEI
EKRVAEVTERLKLCTERLILGREDERRGMWITKYNLA

mRNA from alignment at KK037248.1:230755..231784-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8267 ID=rna8267|Name=rna8267|organism=Nannochloropsis gaditana|type=mRNA|length=1030bp|location=Sequence derived from alignment at KK037248.1:230755..231784- (Nannochloropsis gaditana)
GGCGAGCAAGAGCGTCCCAGTTGGGGGGAGGTTATCCTTGCTGCGTACAA
AGTATCGACGTCTTTAACGATACCTTACCCTGCTTCGCTCCGACAAAGCA
GAAAAATGATTTATAGAGACAAAGTGTCGAATTATGAAAATGTCGACGGC
GATGGGGAGCAAGACTTGACCGCGCTTGGGTTTTTGTTCGATGCGGCGGC
CGCCAAGGCGTGGGTACGGCATAAATTTCAAGCCCCAACGACCGGCCCTT
TTGATTGCCATGCCGAAGATAAGGATCTGAGAAGCTCGATTGAGGTAGAA
GTACAAGTTATAGCCGACGAAGATGGACCAGGAGCCCTGCAAACAGGCCA
GCGTACGTGGCCAGCAGCGCCCTTTTTAGCCCAATACCTAGTCGAGCACT
GGGCTGGAATAACATTTGATCGCAAGTGCGAGGTCCTGGAGCTAGGGGCT
GGTTGTGGACTGGTGGGACTTACTCTGGCGCAGCTTTCTGGTGTCGATAC
CATCATTATGACAGATCATGATCCCGGTTCCTTGAAGCTGATCCAGGAGG
GCATATTTCGTAATCAACATCGGTGGCGTGACGGAGTGCGTTGTGAAATA
TCGCACATGGAATGGGGGAAAGAACTCAATCGACAGATAGTGTCACTCGT
AAACATAGAACGCGTCAATGCAGAACATGGCAGTTGCAAGGAAGGCATCA
TGCTTCTCCTCGTAGGCAGTGACCTAGTGTATAGTTTGGACGTGGTGGAA
AGCTTGTTCAAGACTGTGGCAGACCTGTTTCGTCATCGAGACGAGAGCGG
AAGAGGCAGAGGCCAGTTTCTGCTCTGCGGAAGCTTCGCATTAGGCGATG
AAATAGAAAAGAGGGTTGCGGAGGTGACGGAGAGGCTGAAGCTTTGCACT
GAAAGGTTAATTCTTGGCAGAGAGGATGAGAGGAGGGGCATGTGGATAAC
TAAATATAACCTAGCTTAGTGTTCATGCCAATTAGAAATCAGAGAAAATC
ACTTCGTTCTGCAGGTTGCCAATCCTCTGC

Coding sequence (CDS) from alignment at KK037248.1:230755..231784-

>rna8267 ID=rna8267|Name=rna8267|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at KK037248.1:230755..231784- (Nannochloropsis gaditana)
ATGATTTATAGAGACAAAGTGTCGAATTATGAAAATGTCGACGGCGATGG
GGAGCAAGACTTGACCGCGCTTGGGTTTTTGTTCGATGCGGCGGCCGCCA
AGGCGTGGGTACGGCATAAATTTCAAGCCCCAACGACCGGCCCTTTTGAT
TGCCATGCCGAAGATAAGGATCTGAGAAGCTCGATTGAGGTAGAAGTACA
AGTTATAGCCGACGAAGATGGACCAGGAGCCCTGCAAACAGGCCAGCGTA
CGTGGCCAGCAGCGCCCTTTTTAGCCCAATACCTAGTCGAGCACTGGGCT
GGAATAACATTTGATCGCAAGTGCGAGGTCCTGGAGCTAGGGGCTGGTTG
TGGACTGGTGGGACTTACTCTGGCGCAGCTTTCTGGTGTCGATACCATCA
TTATGACAGATCATGATCCCGGTTCCTTGAAGCTGATCCAGGAGGGCATA
TTTCGTAATCAACATCGGTGGCGTGACGGAGTGCGTTGTGAAATATCGCA
CATGGAATGGGGGAAAGAACTCAATCGACAGATAGTGTCACTCGTAAACA
TAGAACGCGTCAATGCAGAACATGGCAGTTGCAAGGAAGGCATCATGCTT
CTCCTCGTAGGCAGTGACCTAGTGTATAGTTTGGACGTGGTGGAAAGCTT
GTTCAAGACTGTGGCAGACCTGTTTCGTCATCGAGACGAGAGCGGAAGAG
GCAGAGGCCAGTTTCTGCTCTGCGGAAGCTTCGCATTAGGCGATGAAATA
GAAAAGAGGGTTGCGGAGGTGACGGAGAGGCTGAAGCTTTGCACTGAAAG
GTTAATTCTTGGCAGAGAGGATGAGAGGAGGGGCATGTGGATAACTAAAT
ATAACCTAGCTTAG

Synonyms

Publications