rna8262, rna8262 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8262
Unique Name	rna8262
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1715
Alignment location	KK037248.1:219049..221664 +

Link to JBrowse

Properties


Property Name	Value
Product	fad dependent oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100011g73.3428.mrna
Orig protein id	gnl\|cribi\|Naga_100011g73.3428
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:219049..221664 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g73	gene8002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8262	rna8262-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22428.1	cds8238	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:219049..221664+
coding sequence from alignment at KK037248.1:219049..221664+

mRNA sequence

>rna8262 ID=rna8262|Name=rna8262|organism=Nannochloropsis gaditana|type=mRNA|length=1715bp
TTGGACTGCCTCGAAATAATTTGAGGCCGTGTTCTCTCTTTTTTACTTTT
GCTGAGGGCATGTGCGCAGGACACCGACCTTGCCAGCCAAAGTAGCCACA
ACATTATCTTTTTGATATTGCACGGAATTGCAAAGACGATTAAATATGAG
CGGGCCGTCGGACGGACCATCCTTTCATGGTGTCTCGGTCTTTGGGAGCG
TGAAAAGGAAGACTTCGGTTCCGGCGCCGACCTCGTCGTCGCTGCCAAAT
CCCTCCGTCCAACGCGCATTGCAGGTCGCTCAACGCGCTGTCGAGCTCGA
CGAATGCGGTCGTGCCGAGGAGGCGTTCCCACTGTATCAAGAGGCTGTCG
CTCTTTTGCTTGCTGCTGTAAAACAAGATAGGGCTGGCAACGATCAGATC
AAACGGGCGGCCAACAAATACCTTACCCGAGCGGAGGAAATCGATCGACT
GTTGACCCTGAGAAAGCAACAAACCAAGGAATCACCAAATTCGAGGCTGA
AAAAAGACGCTCGTTCCAATAACTTTCCACTTGCATCGACAAAAGGCCTC
GAGAAGGGGCGTGCCTCGGCGGCGGTCCCGACGGGGTCTCGAATGCCCAG
GAGGCCCGACGACTACGATTACACGGGGGGGCGGGCAAGGAAAGGCGAGG
GGGGGGCGGCAGTAAGCCACGGGTCCGTGGGCCGAGCAGGTGGTATGGGT
GAAAGGAGTGGGGGGAACACTCTCAGTTCAACCGGTGCGCGTCCAGGGCG
AGCAAGCGACCTGGAAGCGATTGTGATGGAGGAGATGCTTGACAGGTCAC
CCGGGGTGACCTGGGAACAGATTTCAGGTCTCGAGGATGCAAAGCACACT
TTGCAGGAGGCTGTGGTGTTGCCAAACCTCCGTCCCGACCTCTTCAAAGG
ACTGCGTGCCCCCCCCCGTGGGGTCCTGCTCTTCGGTCCTCCAGGTACGG
GAAAGACACTTCTAGCCAAGGCAGTGGCCAGTGAAACGGGCTTTGCGTTC
TTCTCCATCTCTGCCTCTTCCCTGGTATCAAAGTTCCTCGGCGAGGGCGA
GAAGATGGTTCGCGCGCTTTTTCAAGTGGCGCGCAGAGAGCAGCCATCGG
TTGTTTTCATCGATGAAATAGATAGTATGCTGGGTCAGCGCAAAGATCAA
GAACACGAAGCCACGCGGAGGCTCAAGACTGAATTTCTCGTGCAGCTCGA
CGGGGCTGGCACAGACAATGAGGACAGAATCCTGGTTATGGGTGCCACTA
ATTTGCCGTGGGCCTTGGACGAGGCTGTTCTCCGAAGGCTCCCAAAGAAA
ATTTTTATTCCGCTTCCTGATACCATCACTCGAGCGACGTTGCTCAAGAA
TCTACTGCAGAGCCAGAAGCACGCCCTTACGCCAGACCATCTAGGTGAGA
TTGTTGGTCGCACGGCAGGTTACAGCTGCAGCGATTTGGCACAGGTGGCC
AAGGATGCGGCGATGGGTCCGTTGCGGGACTTGGATGGTCCAGTGCTGAG
GACTGTAAAAGAAAACCAATTGCGCCCCATAAGCATGGCTGATTTTGACC
ACGCCATCTACGCTATTCGGCCCAGCGTCTCGCAAGGCACGGTGCAGGCG
TTCGAAAAGTACATGACAGATAATGGGTACATTCGACACAGTTAATCCAA
AATCCAATGTAGATAAAACTACGAACGATAGCATTACCATGAACCGAAGT
AGAAAGGTGTTGAAA

protein sequence of rna8262

>rna8262-protein ID=rna8262-protein|Name=rna8262|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MASATTSAASEIGILVIGGGAVGLSVARTLAERQIGRGVLLVERHAKLGW
ESSSHNSEVIHASVYYPPGSLKARLCRKGNEMMYALCKAKSIPHANIGKL
LVPKNMDEVRLLPRVLATAVGSGGQGVRVVNRDELRDLEPNVEAPAAIYC
PTSGIVDSHALVQYYESDFLANGGDVALNAEVVGLRKYKGIPAYQVDVEE
VDLSGPQRRVKARTSLQARCVVNCAGLGSGRISALAGIDVDEAQYRLHPT
KGVYFRVHRQLSLYPKRLIYPLPIRGSVGVHTTPDLYGGMRLGPLETWLP
QRESGKEGKGAVGDFSHARNESYYGAASLDMSVSEDLKAKFVDAVKPFLP
FIESEDIAPESSGIHARLQREHEEVMRDWVITHEAARGLPNFFNLVGIES
PGLTASAAIGEYVAHMVHAESK

mRNA from alignment at KK037248.1:219049..221664+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8262 ID=rna8262|Name=rna8262|organism=Nannochloropsis gaditana|type=mRNA|length=2616bp|location=Sequence derived from alignment at KK037248.1:219049..221664+ (Nannochloropsis gaditana)
CGCCCCTTCTCGAGGCCTTTTGTCGATGCAAGTGGAAAGTTATTGGAACG
AGCGTCTTTTTTCAGCCTCGAATTTGGTGATTCCTTGGTTTGTTGCTTTC
TCAGGGTCAACAGTCGATCGATTTCCTCCGCTCGGGTAAGGTATTTGTTG
GCCGCCCGTTTGATCTGATCGTTGCCAGCCCTATCTTGTTTTACAGCAGC
AAGCAAAAGAGCGACAGCCTCTTGATACAGTGGGAACGCCTCCTCGGCAC
GACCGCATTCGTCGAGCTCGACAGCGCGTTGAGCGACCTGCAATGCGCGT
TGGACGGAGGGATTTGGCAGCGACGACGAGGTCGGCGCCGGAACCGAAGT
CTTCCTTTTCACGCTCCCAAAGACCGAGACACCATGAAAGGATGGTCCGT
CCGACGGCCCGCTCATATTTAATCGTCTTTGCAATTCCGTGCAATATCAA
AAAGATAATGTTGTGGCTACTTTGGCTGGCAAGGTCGGTGTCCTGCGCAC
ATGCCCTCAGCAAAAGTAAAAAAGAGAGAACACGGCCTCAAATTATTTCG
AGGCAGTCCAACAGCTTCCAAATGCTCCTAACGTCCGTGAAATTACAAGG
AAAAAGTTATTATATGAACATGTCGAGAAAAAAGTAGCACGGGCAAAGCG
GTTGCGAGCCGGTAACGCATATCACGTTCAGGCGATCAGAAGCTGTCGCT
GTCGCTCTGCGCCGTGGGACTCACAATATGCACTCAAATATAACATAACA
ttttgagggaggaaaaggacttCCAAAATATTTAATTTACATGTTTGGGG
AGAGCACGTCAAGCAAGGCGGCTTGCGATCCCGCACAGCTTCATTTGGCA
GGCTTGTGCTTCGGATAAGGaggccaacctcccccctccctctgaaCTGC
ACTCCACCCACGCACACGCCAATCCCGCCACCCCCGTTTGACCATCACCT
TATAAAAGACAAGTTCAGGAGCTTCGATTTCTTGGAGGCGACGAGGTGCA
TTGAGGGAAGCATTATGGCGTCTGCCACCACATCTGCAGCCTCGGAGATC
GGAATCCTCGTCATTGGAGGCGGTGCCGTCGGGCTCTCTGTAGCAAGAAC
ATTGGCCGAGCGGCAGATTGGTAGGGGCGTCCTACTGGTGGAACGTCATG
CCAAACTAGGCTGGGAATCAAGCTCACACAATAGCGAGGTTATTCATGCC
TCAGTCTACTACCCGCCAGGCTCTCTCAAGGCGCGCCTTTGCCGAAAAGG
AAATGAGATGATGTACGCATTGTGCAAAGCGAAGAGCATACCACATGCAA
ATATTGGCAAACTCCTCGTACCCAAAAATATGGACGAGGTCAGGTTGCTT
CCGCGGGTGCTAGCCACGGCGGTGGGTTCCGGGGGCCAGGGTGTAAGGGT
AGTAAATCGTGACGAGCTTCGGGATCTGGAGCCAAACGTTGAGGCGCCGG
CCGCCATTTATTGTCCCACGTCCGGTATTGTCGACAGTCATGGTAAGACG
CAGGTGAAAGACGagaacagggaggaggtagaaagagtatggggcggagg
aagagcatcGCCGCAAGTTCTCAAATCGCAATAATTGACTCTTTTTTTCA
CCCGTGCAACCTAAACTCGATTGGTCGCCGGCGAAGCTTTGGTGCAGTAC
TATGAAAGCGATTTTTTGGCGAACGGGGGCGACGTGGCCTTGAACGCGGA
AGTGGTGGGGCTTCGCAAATACAAGGGCATCCCGGCCTACCAGGTCGACG
TCGAGGAGGTGGACCTGTCGGGGCCCCAGCGCCGCGTAAAGGCCCGTACC
TCGCTCCAAGCCCGCTGTGTCGTGAACTGCGCGGGCCTAGGTAGTGGCCG
TATCTCTGCTTTGGCGGGCATCGACGTGGATGAGGCTCAGTACCGACTGC
ACCCGACCAAAGGGGTCTACTTCCGCGTCCACCGGCAGCTCTCCCTCTAC
CCAAAGCGCCTGATCTACCCCTTGCCCATCCGGGGATCCGTAGGCGTGCA
CACGACCCCGGACCTGTATGGCGGCATGCGCCTAGGGCCCTTGGAGACCT
GGCTGCCGCAGAGGGAatcagggaaggagggaaaaggagctgTGGGGGAT
TTCAGCCACGCCCGGAACGAGAGCTACTACGGCGCGGCCTCACTTGACAT
GTCCGTTTCCGAGGACCTCAAGGCCAAGTTCGTGGACGCGGTGAAGCCCT
TTCTGCCCTTCATCGAGTCCGAGGACATCGCTCCTGAGTCCAGCGGGATC
CATGCCAGGCTGCAGCGCGAGCACGAGGAGGTCATGCGGGACTGGGTGAT
CACCCACGAGGCGGCGAGAGGCCTTCCCAACTTTTTCAACTTGGTCGGCA
TCGAGTCTCCCGGGCTGACGGCGAGCGCAGCGATCGGGGAGTACGTGGCT
CATATGGTTCACGCGGAGTCGAAATGATGAGCGGGACGCCGCGCTTAGGC
TAGTAAAAAGGAATTCAAATCTCATGACGGAAACGGGTGGTATGCAAATG
TTTGGCTTCTTTCGAGAACAAGGGACCGAAACAGGCACCGGAGGCCTCCT
GCACAGAAGTGGCACATGGCTTAATTTTGCTCCTGCCCTCGCGTACTagc
cttcctccatttcgcC

Coding sequence (CDS) from alignment at KK037248.1:219049..221664+

>rna8262 ID=rna8262|Name=rna8262|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at KK037248.1:219049..221664+ (Nannochloropsis gaditana)
ATGGCGTCTGCCACCACATCTGCAGCCTCGGAGATCGGAATCCTCGTCAT
TGGAGGCGGTGCCGTCGGGCTCTCTGTAGCAAGAACATTGGCCGAGCGGC
AGATTGGTAGGGGCGTCCTACTGGTGGAACGTCATGCCAAACTAGGCTGG
GAATCAAGCTCACACAATAGCGAGGTTATTCATGCCTCAGTCTACTACCC
GCCAGGCTCTCTCAAGGCGCGCCTTTGCCGAAAAGGAAATGAGATGATGT
ACGCATTGTGCAAAGCGAAGAGCATACCACATGCAAATATTGGCAAACTC
CTCGTACCCAAAAATATGGACGAGGTCAGGTTGCTTCCGCGGGTGCTAGC
CACGGCGGTGGGTTCCGGGGGCCAGGGTGTAAGGGTAGTAAATCGTGACG
AGCTTCGGGATCTGGAGCCAAACGTTGAGGCGCCGGCCGCCATTTATTGT
CCCACGTCCGGTATTGTCGACAGTCATGCTTTGGTGCAGTACTATGAAAG
CGATTTTTTGGCGAACGGGGGCGACGTGGCCTTGAACGCGGAAGTGGTGG
GGCTTCGCAAATACAAGGGCATCCCGGCCTACCAGGTCGACGTCGAGGAG
GTGGACCTGTCGGGGCCCCAGCGCCGCGTAAAGGCCCGTACCTCGCTCCA
AGCCCGCTGTGTCGTGAACTGCGCGGGCCTAGGTAGTGGCCGTATCTCTG
CTTTGGCGGGCATCGACGTGGATGAGGCTCAGTACCGACTGCACCCGACC
AAAGGGGTCTACTTCCGCGTCCACCGGCAGCTCTCCCTCTACCCAAAGCG
CCTGATCTACCCCTTGCCCATCCGGGGATCCGTAGGCGTGCACACGACCC
CGGACCTGTATGGCGGCATGCGCCTAGGGCCCTTGGAGACCTGGCTGCCG
CAGAGGGAatcagggaaggagggaaaaggagctgTGGGGGATTTCAGCCA
CGCCCGGAACGAGAGCTACTACGGCGCGGCCTCACTTGACATGTCCGTTT
CCGAGGACCTCAAGGCCAAGTTCGTGGACGCGGTGAAGCCCTTTCTGCCC
TTCATCGAGTCCGAGGACATCGCTCCTGAGTCCAGCGGGATCCATGCCAG
GCTGCAGCGCGAGCACGAGGAGGTCATGCGGGACTGGGTGATCACCCACG
AGGCGGCGAGAGGCCTTCCCAACTTTTTCAACTTGGTCGGCATCGAGTCT
CCCGGGCTGACGGCGAGCGCAGCGATCGGGGAGTACGTGGCTCATATGGT
TCACGCGGAGTCGAAATGAATGGCGTCTGCCACCACATCTGCAGCCTCGG
AGATCGGAATCCTCGTCATTGGAGGCGGTGCCGTCGGGCTCTCTGTAGCA
AGAACATTGGCCGAGCGGCAGATTGGTAGGGGCGTCCTACTGGTGGAACG
TCATGCCAAACTAGGCTGGGAATCAAGCTCACACAATAGCGAGGTTATTC
ATGCCTCAGTCTACTACCCGCCAGGCTCTCTCAAGGCGCGCCTTTGCCGA
AAAGGAAATGAGATGATGTACGCATTGTGCAAAGCGAAGAGCATACCACA
TGCAAATATTGGCAAACTCCTCGTACCCAAAAATATGGACGAGGTCAGGT
TGCTTCCGCGGGTGCTAGCCACGGCGGTGGGTTCCGGGGGCCAGGGTGTA
AGGGTAGTAAATCGTGACGAGCTTCGGGATCTGGAGCCAAACGTTGAGGC
GCCGGCCGCCATTTATTGTCCCACGTCCGGTATTGTCGACAGTCATGCTT
TGGTGCAGTACTATGAAAGCGATTTTTTGGCGAACGGGGGCGACGTGGCC
TTGAACGCGGAAGTGGTGGGGCTTCGCAAATACAAGGGCATCCCGGCCTA
CCAGGTCGACGTCGAGGAGGTGGACCTGTCGGGGCCCCAGCGCCGCGTAA
AGGCCCGTACCTCGCTCCAAGCCCGCTGTGTCGTGAACTGCGCGGGCCTA
GGTAGTGGCCGTATCTCTGCTTTGGCGGGCATCGACGTGGATGAGGCTCA
GTACCGACTGCACCCGACCAAAGGGGTCTACTTCCGCGTCCACCGGCAGC
TCTCCCTCTACCCAAAGCGCCTGATCTACCCCTTGCCCATCCGGGGATCC
GTAGGCGTGCACACGACCCCGGACCTGTATGGCGGCATGCGCCTAGGGCC
CTTGGAGACCTGGCTGCCGCAGAGGGAatcagggaaggagggaaaaggag
ctgTGGGGGATTTCAGCCACGCCCGGAACGAGAGCTACTACGGCGCGGCC
TCACTTGACATGTCCGTTTCCGAGGACCTCAAGGCCAAGTTCGTGGACGC
GGTGAAGCCCTTTCTGCCCTTCATCGAGTCCGAGGACATCGCTCCTGAGT
CCAGCGGGATCCATGCCAGGCTGCAGCGCGAGCACGAGGAGGTCATGCGG
GACTGGGTGATCACCCACGAGGCGGCGAGAGGCCTTCCCAACTTTTTCAA
CTTGGTCGGCATCGAGTCTCCCGGGCTGACGGCGAGCGCAGCGATCGGGG
AGTACGTGGCTCATATGGTTCACGCGGAGTCGAAATGA

Synonyms

Publications