rna8260, rna8260 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8260
Unique Name	rna8260
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2794
Alignment location	KK037248.1:213268..215409 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g71.3451.mrna
Orig protein id	gnl\|cribi\|Naga_100011g71.3451
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:213268..215409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g71	gene8000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8260	rna8260-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22451.1	cds8236	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:213268..215409+
coding sequence from alignment at KK037248.1:213268..215409+

mRNA sequence

>rna8260 ID=rna8260|Name=rna8260|organism=Nannochloropsis gaditana|type=mRNA|length=2794bp
CCGGGAGGTGCCTTGCGTCGAGGGAGATCAGAGGGCGAAGGAAACTGTCT
TCGTGCGGGCGCCTGGTTGTTTTTTTTAAATTATCGACGTTGCGGTGTAC
GCGTCGCATTTGTGTTCAGCCTGTGTGTTTACCACTGCAAGTTACTTCAC
CTAGAGGTCGCTGCCTCGTCATGCCGGTCATATCAGAAGCAACCAGCATG
CGAGAGTGTATGACTATGTGGGCGTCAAAGTGGCATCGCATTCCACTATC
ACTGGGCAGATAATATGTGATGTCCCTTCATCAGTACTTGTGCATGAACC
TGTAGTCTATTCTTTCGTTTGGCCCTTCCTTCTTGTTTCGCACATCATGC
AGTTTCTATAGAATGTGTGGTCCGGAGACCCCTGAATTTGAATTTGCGGA
GGATGCACGCCCTTTATTACAGAACTTTTTATCAGGTCCTTCGCCACGAA
TTTGGTCACTGTCCACATAAGTGGAAGTTATACATACGATGCTTGATTGG
ACGAACTCATAATGTTACGTAAGTCACCAACCTCGAATCCTCAAATTGAA
CAGGTACTTTCTTCCTTCCAGAAGCACCGCCACTACAATGCAGAGAGTAC
GAAGCTGGGTCGCAGGTGCCCTCGTGACCGTAGGCCTCATGATGGCCTCG
TCCTTGGGATCTGTGAAAGCCGAGGACGAGCCCCTGGGTACCGTGATTGG
TATCGATCTGGGGACCACCTATTCTTGTGTAGGTGTCTTCAAGAACGGCC
GCGTGGAGATTATCCAAAACGATCAAGGCAATCGTATTACTCCTTCCTAC
GTGGCGTGGGACCCTGAGTCTGGCGAGCGCCTGATTGGAGACGCTGCTAA
GAACCAGGCCACGGTAAATCCGGAGAACACGGTCTTTGACATCAAACGTT
TGATCGGCCGCAAATTCATGGACAAGACGGTCCAGTCCGACATCAAGCTG
CTGCCCTACGCCGTGGTGAACAAGAATGACAAGCCCCAGGTGGAGGTGGA
AGTGTCGCCTGGTGATCGCAAGCAGTTTTCGCCCGAGGAAGTGTCTGCCA
TGATACTTCAGAAGATGCGCTCCATCGCCGAGACCTATCTCGGCGAAGAC
GTGAAGCACGCCGTGGTGACGGTCCCCGCCTATTTCAACGACGCCCAGCG
CCAGGCCACCAAGGACGCTGGAACCATTTCGGGCATGACGGTGCAGCGCA
TCATCAACGAGCCTACTGCCGCCGCCATTGCTTACGGTCTTGACAAGAAG
GGCAAGGAGCAGAACATCCTCGTCTTCGATCTTGGTGGGGGTACCTTCGA
TGTGACCTTACTGACGATCGACAACGGTGTATTCGAGGTCTTGGCCACGA
ACGGTGACACGCATCTGGGTGGTGAGGACTTCGACCAACGGGTCATGCAG
TACTTCATCAAGATGATTAAGAAGAAGAACAACGTGGACATCTCCTCTGA
TAAGCGCGCCGTTCAAAAGCTTCGCCGAGAGGTGGAACGTGTCAAGCGTG
CTCTCTCCACGCAGCCCCAGGCACGTGTCGAAATCGAGGCCCTTTACGAG
GGCATCGACCTGTCGGAGACATTGACTCGCGCCCGTTTCGAGGAACTGAA
CGTGGATCTCTTCAAGAAGACCTTGGGGCCTGTGCAGAAAGTGTTGGACG
ACGGCGACATGGCCAAGACCGACATCGACGAGGTGGTGCTGGTGGGCGGT
TCCACGCGCATCCCCAAAGTCCAGCAGCTCCTCAAGGACTTTTTCGGTGG
AAAGGAACCTTCCAAGGGGGTCAACCCCGATGAGGCCGTGGCGTACGGTG
CGGCTGTCCAGGGAGGCATCCTCTCGGGTGATACCTCTGGCTTCACCCAG
GACCTGTTGCTGCTAGATGTGACCCCTCTGTCTCAAGGAATCGAAACTGT
GGGCGGAGTCATGACCAAGCTGATCACGCGCAACACTGTCATCCCCACCA
AGAAGTCCCAGACGTTCTCCACCTACCAGGACAACCAGCCCGCCGTCCTC
ATCCAAGTGTTCGAGGGCGAGCGCTCCATGACCAAGGACAACCACCTCCT
GGGCAAGTTTGAGCTGACTGGCATCCCTCCCGCTCCTCGCGGCGTTCCTC
AGATTGAAGTGACGTTTGAAATCGATGCCAACGGCATCCTGCAAGTGTCG
GCCGAGGACCGAGGCACAGGCAAGAGCGAGAAGATCACCATTACGGCAGA
GAAGGGTCGCCTGTCTCAGGACGAAATTGAGCGCATGGTCCGAGAAGCCG
AGGAATTCGCAGACGAGGACAAGAAGGTGAAGGAAAAGATCGACGCGAGA
AATGGTCTGGAATCTTATCTCTACAACTTGAAAAACACTCTGGAAGATGA
AGAGAAGGGACTTGCCGACAAGCTCTCTGCCTCGGACAAAAAGGAGGTCG
AAGCGACCATCAATGAGGCCATGGAATGGCTGGAAGACAATGCGGACGCC
GACACAGAGGAGTACACGAAGAAACAGAAAGAGGTTGAGACGATCGTGAA
CCCCATCCTGAAGGAGGTGTACCAGTCTGCTGGCGGGCCTCAAGGCGGCG
CCGACGACAGCTCGTATGACGAGGAGCTGTAAAGGAAGCACACTGTGACC
TTAATCGTGGGCGTCTTTCACGCGTGTTGTGTTAGTATCAAGGACTTGAG
GAGGAAAACCCAAGAGACTCCATCGACCCATCTCGATAGACGACGAGGTT
GGGCAGCGTCTGCAGTCCGTCATTTCCGGGCCTTAGGAAGAAGTATTTTT
GAAACAGATTTTTTTCAAACAACTTCGTTTGTTTCTTGTTGAAG

protein sequence of rna8260

>rna8260-protein ID=rna8260-protein|Name=rna8260|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MSPRLMVRVCNRETEGAEVRGVPLFSAWSPRDRVVEGLAMAVDATAQKAD
VSDPKRKQKEAYSTTDEEVSENLEEVEARKEKQRRNRMLADMFLEVLFIL
AEPLAFTPIALQARRFAQSSATDNGLPKRPVGLSASVMEGFEAQVLLEKL
LARWSCEVTVNGPAAAASPREKRFTPATTLMRALRGEYKNSGAAALLLEA
AGDWEDALRLRLEEIIEILVSGGNGDDDELSDQAVEVLLGLLHSHVLRRR
GINKLSTRERMAINLLQAWASMELPSNPLEDAILSPAFCNAVSYGNVTSP
ISTNDCLWVWHMGMALMASLLILHAGTPGSLVDADGGLTVPGSKPLRFSS
SFYVRLTEHVIEHGSVMQELGVTDLWSTGGREPTQLRIPMPIPALWDSVC
QQISHLERGQAASNRVEVPVESLLAAAYRSPSYEGGDTRDRLDEERGSEY
SRAFANGRSSEGVVGRFRVVAFSCGHVLNQAELVQVFVPSLASKLTSLAR
PLHLTAEILCQEYQAAIRSNKYGPESSVNKQRSDAHISLACPSCVADFLV
NMLEQDKNDCKPPLR

mRNA from alignment at KK037248.1:213268..215409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8260 ID=rna8260|Name=rna8260|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp|location=Sequence derived from alignment at KK037248.1:213268..215409+ (Nannochloropsis gaditana)
CAAGCGGCCCGTTCCGTGCTTTGGGCGGTTTTACCTCTGCGTCTCCAGCT
CGATATCTTATTGTCAGACCCACAGCTTCTGCTTCTCGATGAGCAATACC
AGTGGCTGTTGTCAAAGCTCCCTCATCTACCGCGACCCTGCCTTGGAGCT
CTTGGGCTCCAGCTGTCGTACTGGGTGGGGGCCGGCCCGCTGCCTAATCG
AGacccacccccgcccctgcccaTGAGCCCACGCTTGATGGTGAGAGTAT
GCAATCGCGAGACTGAGGGAGCAGAGGTCCGGGGCGTGCCGCTTTTTTCT
GCTTGGTCGCCACGGGACAGGGTCGTGGAGGGTTTGGCCATGGCCGTTGA
CGCTACTGCTCAGAAAGCTGACGTTTCGGACCCGAAACGAAAACAAAAGG
AGGCTTATTCCACTACTGATGAGGAAGTCTCTGAGAActtggaagaggtg
gaggccaggaaggagaagcaacgGCGTAATCGCATGCTCGCCGATATGTT
TTTGGAAGTCCTCTTTATCCTCGCGGAGCCGCTCGCTTTCACCCCCATAG
CCTTACAGGCGCGCCGTTTTGCGCAGTCCAGTGCGACAGACAACGGGCTG
CCAAAGCGTCCTGTGGGTCTATCCGCTTCTGTAATGGAAGGGTTTGAAGC
TCAAGTGCTGCTTGAGAAGTTGCTTGCAAGATGGAGCTGCGAGGTTACCG
TCAACGGgccagccgccgccgcttctcCGCGGGAAAAGCGATTTACACCG
GCAACCACCTTAATGCGAGCACTGAGGGGGGAATACAAGAACTCTGGGGC
CGCGGCTTTGTTGCTAGAGGCAGCTGGCGACTGGGAGGATGCACTGAGGT
TGCGTTTAGAGGAGATAATTGAAATTTTGGTGTCTGGTGGAAATGGAGAT
GACGATGAGCTCTCTGATCAGGCGGTCGAGGTGCTCTTGGGGCTGCTTCA
TAGCCACGTATTGCGGCGTCGGGGAATCAACAAGCTGTCGACCCGTGAGC
GGATGGCGATCAACCTGTTGCAGGCGTGGGCCTCTATGGAACTACCTTCG
AATCCTCTGGAAGACGCCATACTGTCGCCCGCTTTCTGCAACGCTGTATC
CTACGGAAATGTCACAAGTCCCATAAGCACAAATGACTGCCTTTGGGTTT
GGCACATGGGCATGGCCCTCATGGCGAGTCTCCTGATCCTCCATGCCGGC
ACGCCAGGCAGCTTGGTGGACGCTGATGGCGGGTTGACGGTGCCAGGGTC
GAAACCTTTACgtttctcatcctccttctaTGTTCGTCTGACCGAACACG
TGATAGAGCATGGCTCTGTGATGCAGGAACTGGGTGTGACAGACTTATGG
AGCACGGGAGGTCGAGAGCCAACGCAGCTCCGCATCCCCATGCCAATCCC
AGCTTTGTGGGACTCGGTGTGCCAGCAAATAAGTCATCTCGAGCGGGGTC
AAGCAGCCTCCAATCGCGTCGAGGTTCCCGTTGAGAGCTTACTGGCAGCT
GCGTATCGGTCTCCAAGCTATGAAGGCGGCGACACGCGCGACCGATTAGA
TGAAGAGCGGGGCTCTGAATACTCAAGAGCTTTCGCGAACGGGCGGAGTT
CGGAGGGAGTGGTAGGGAGATTTCGTGTCGTGGCTTTCAGTTGCGGACAT
GTGCTGAACCAAGCCGAGCTAGTTCAGGTTTTCGTGCCATCGCTGGCAAG
CAAGTTGACAAGTCTAGCCAGACCTCTGCATTTAACAGCAGAAATTTTGT
GCCAAGAGTACCAAGCAGCCATTAGGTCTAATAAATATGGCCCTGAAAGT
AGTGTCAATAAACAAAGGTCCGACGCACACATAAGCCTTGCGTGTCCGTC
GTGTGTTGCGGACTTTTTGGTCAACATGCTTGAACAGGACAAGAATGATT
GTAAACCACCTCTGCGCTGAGCTCGGAAAACTAGTGTTAAATGATGTTGG
CAAGTGTGCTTATGTACATAAAAGATGAAACAAAATATTGTGTATTCTTT
ATGCTACTCTCTagattcctcctcctccaacgcctgAGGAGCCAAGTCCT
CCGGGTGCGGCGACAGGTGCAGGGAGACCCCTGGGATGTGTACAGGCTGG
TCAGAGTTAGCATTTTTTTCAAAAGCCATCGAACCTTGACAG

Coding sequence (CDS) from alignment at KK037248.1:213268..215409+

>rna8260 ID=rna8260|Name=rna8260|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at KK037248.1:213268..215409+ (Nannochloropsis gaditana)
aTGAGCCCACGCTTGATGGTGAGAGTATGCAATCGCGAGACTGAGGGAGC
AGAGGTCCGGGGCGTGCCGCTTTTTTCTGCTTGGTCGCCACGGGACAGGG
TCGTGGAGGGTTTGGCCATGGCCGTTGACGCTACTGCTCAGAAAGCTGAC
GTTTCGGACCCGAAACGAAAACAAAAGGAGGCTTATTCCACTACTGATGA
GGAAGTCTCTGAGAActtggaagaggtggaggccaggaaggagaagcaac
gGCGTAATCGCATGCTCGCCGATATGTTTTTGGAAGTCCTCTTTATCCTC
GCGGAGCCGCTCGCTTTCACCCCCATAGCCTTACAGGCGCGCCGTTTTGC
GCAGTCCAGTGCGACAGACAACGGGCTGCCAAAGCGTCCTGTGGGTCTAT
CCGCTTCTGTAATGGAAGGGTTTGAAGCTCAAGTGCTGCTTGAGAAGTTG
CTTGCAAGATGGAGCTGCGAGGTTACCGTCAACGGgccagccgccgccgc
ttctcCGCGGGAAAAGCGATTTACACCGGCAACCACCTTAATGCGAGCAC
TGAGGGGGGAATACAAGAACTCTGGGGCCGCGGCTTTGTTGCTAGAGGCA
GCTGGCGACTGGGAGGATGCACTGAGGTTGCGTTTAGAGGAGATAATTGA
AATTTTGGTGTCTGGTGGAAATGGAGATGACGATGAGCTCTCTGATCAGG
CGGTCGAGGTGCTCTTGGGGCTGCTTCATAGCCACGTATTGCGGCGTCGG
GGAATCAACAAGCTGTCGACCCGTGAGCGGATGGCGATCAACCTGTTGCA
GGCGTGGGCCTCTATGGAACTACCTTCGAATCCTCTGGAAGACGCCATAC
TGTCGCCCGCTTTCTGCAACGCTGTATCCTACGGAAATGTCACAAGTCCC
ATAAGCACAAATGACTGCCTTTGGGTTTGGCACATGGGCATGGCCCTCAT
GGCGAGTCTCCTGATCCTCCATGCCGGCACGCCAGGCAGCTTGGTGGACG
CTGATGGCGGGTTGACGGTGCCAGGGTCGAAACCTTTACgtttctcatcc
tccttctaTGTTCGTCTGACCGAACACGTGATAGAGCATGGCTCTGTGAT
GCAGGAACTGGGTGTGACAGACTTATGGAGCACGGGAGGTCGAGAGCCAA
CGCAGCTCCGCATCCCCATGCCAATCCCAGCTTTGTGGGACTCGGTGTGC
CAGCAAATAAGTCATCTCGAGCGGGGTCAAGCAGCCTCCAATCGCGTCGA
GGTTCCCGTTGAGAGCTTACTGGCAGCTGCGTATCGGTCTCCAAGCTATG
AAGGCGGCGACACGCGCGACCGATTAGATGAAGAGCGGGGCTCTGAATAC
TCAAGAGCTTTCGCGAACGGGCGGAGTTCGGAGGGAGTGGTAGGGAGATT
TCGTGTCGTGGCTTTCAGTTGCGGACATGTGCTGAACCAAGCCGAGCTAG
TTCAGGTTTTCGTGCCATCGCTGGCAAGCAAGTTGACAAGTCTAGCCAGA
CCTCTGCATTTAACAGCAGAAATTTTGTGCCAAGAGTACCAAGCAGCCAT
TAGGTCTAATAAATATGGCCCTGAAAGTAGTGTCAATAAACAAAGGTCCG
ACGCACACATAAGCCTTGCGTGTCCGTCGTGTGTTGCGGACTTTTTGGTC
AACATGCTTGAACAGGACAAGAATGATTGTAAACCACCTCTGCGCTGA

Synonyms

Publications