rna8258, rna8258 (mRNA) Nannochloropsis gaditana

Overview
Namerna8258
Unique Namerna8258
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1792
Alignment locationKK037248.1:204646..206550 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g69.3450.mrna
Orig protein idgnl|cribi|Naga_100011g69.3450
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:204646..206550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g69gene7998Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22450.1cds8234Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8258rna8258-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8258 ID=rna8258|Name=rna8258|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp
TTAAAATTCACTACCTGTATGCCACTTTCCTCACTCTTTCCGATAGGACA
TGCATCGAGGATTGGTCCCAGGGAACGTCTGAGGAGCAAGCCAAAAGCTG
AAATCTGAGGACACTTCTCTGCCATGATGACAGGCAAGCGATTCGATCGC
TCAGCCACGGATATCCTTCTCAATGGGGGGTTGCAGGAAAGAGGCTCCGA
GGTGCGCATGCTCCCCTCATGGGAAGGCGCTTCCAAAGTCCGTTCAGATC
CAGCCTTGCTTCCATTGAATATGGTGCGGATCGGCACAGAAGAGTATCAA
CTATTTGCCCCTAAGAGGGATGAAAGCAGATCTGTCACCCCCCGCCAAGC
ACCTTACCCAGTGAAGGAGCGACTGCCTCGCTGGTTACCACCTCGGTTGA
AATGGCCTCTGGAAAATGCACTGGGCCGCTTCCTGGGCGAAAGACCGCGG
CAGCCACCTTGGTTGTTGCAAGTGGATGTGTCATGGCCCAGCGGCCACCG
CTGGAACAAGGGCGCGGCCTTAATGGTTCTATGCCCCCTCTTGGCCTGGT
CCTCTGGCATGAGCCTGGCCACGGTGATGGCGGGGACGGGAACGGGCTTC
CTGCACGGCATTTTCCTGCGCATCCGGACGGAAAAGTGTTTCGACTGGAA
TGTATGCAAAGGCGGGCTCATGGCCTCAAGTGCTGCACTGTACTTGGCGC
TCGCCGTCTCAGGCACGCCGCCGGCCTTGCGGGGGTGGACCGCGAGGGCC
TTACTCTGGAAGCCTTTGAGCGGCTGCTTGGGCCTGGCCGAATGGTTCCT
GGTCATGTGGGTGTCCTTGCTGCTTCCGTTCTTCAAAGACCCGAAGGCCT
CTTACTACTCGAGCGATACCGTGACCGTGGGCATGCTCCTCCTCACCCTT
CTCTACGCTAGCAACTTCATGGTGCCACTGGGCCTCTGGGCGGGCACCTT
GCTCAAGGTAACCCCCCCACCTCCCCCTCCCCCTCCGCCCGCGTCGGCCG
TCACAGGAGCATTAAGACTCGGCGGGACGCCGCACGTGAGCACAGGTAGA
CCGCACCAGGGGCCAGCTCAGTCGCTCCTCCCCGAGAAAGCCGGCTCCTT
CCTTACTACTGCCTCGCCTACGGTCGCTGCTGCGCCTGCAATGGCGGCTG
GAGAGCTGCAGCACCCGCAACATTCTCATTTTACGCTGCTTGAGGCACCA
CAAGAGGCTTGGCATGGATGCGAGCCCCCCCCCCCTCTCGGGGCGTGAGA
GACTCCTCGCGAAAGCGGCGCTCTTGAAGCGGGAGCAGGGCATGCCCGGC
GATCCGCGCCGATGGTTGAGCCCTACCCAGGAAGATGAGCAGGAGCCGGG
CTTTGACGACGGTCTATCTCGGGCTAGGCCGAGAATCAATGCGCAGCGGG
GGCCGGGGGCTGGAAACGAGGAGTTGACGTGGTCGAGGCATAGGGGGAGT
CGGTCGTCCCGAGGAGGGAGCAGGAGCCAATGGGGAGACCGCATAAGGGA
GGAACAGCCTCAGAGCGGGGCATCTCGGTACGGGCTACGCTCGCGAAGAG
GGAGGACGGTGGGGTGGGAGGACGGCAAAGGGGAACTGGAGCCTGCACCT
ATGGAGCTCTCGGCGTCGCCCCCCCCACCCGTGCCCATGGACACGGAGGA
TAACGTGGATGGCGTTTCCAGGGGCTCGATGCGGGGACTGGGGCGTTTCG
AGTCGTTGAACCCTCATCAGTACTGATCGCTAAGTGGATCATATCAGAAA
AGCATACGCGAACAAAGAAACGATTCGAAAGACATAAGCTGA
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protein sequence of rna8258

>rna8258-protein ID=rna8258-protein|Name=rna8258|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MLGTGARMRKKSNPNGKIKTTCTRGLGFVAIVGFSWGLFILTRLAGPVLA
PISREGSENRNALDTLASVPPAKNDPSMWQWNEAPEDDRLYLVFSTDCSG
YQNWQSLAVFFTADAVRQPGTIVRIASGCSEAEKKEVQKLYDTFPVRFQV
HFTPNFKKDAKSGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFL
FMRPLTYKVKQDRVLYSPPVTDGDLIDEVREGHPVAQYYGIGSQWTKFKV
EYIAGKDSPASKVSISDASRYYSVGAPYIAHVKDMRKIAESWANFVPRVY
EEYPHLLAEMYAYSIAAAHLELPHLRLDHYMVSNTQAAGEGWPFVDRLTD
KYVCSAEAPDQGQEQPVFLHYCQFYRVEHWGFHKRRVATNLFTCKSPLFI
MPPEDLEDTHWKDNGDKKTMYSKQEAQRAAYMLCNVIRKLNGAAVKFKNL
NCLAGSANYTQEIKIW
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mRNA from alignment at KK037248.1:204646..206550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8258 ID=rna8258|Name=rna8258|organism=Nannochloropsis gaditana|type=mRNA|length=1905bp|location=Sequence derived from alignment at KK037248.1:204646..206550- (Nannochloropsis gaditana)
GAGGCGGACACGTTGGGAAGGCTCGCCAAGGGAAGGGAAGCGACTCGCTC
GGAGGGAGTTCGAATATGGCTATGGGTCCGTCCCCTCTCTTTACCCATCC
CACTTTTTCACGGGCATGCAACCGAATGGCGTACCCTAAAATCCGTCTTC
AACTCTGATGAGTTGCTTTTGAGTCGTGGCAATTTTTTGCCTAGTCAATT
GAATATTGCTTTGCGGAAAGAGAGGCAAAAGAAGAAAGTTTTGGAAGATG
CAGGCCGGGCGAAATCGATTTGTCATGCTTATCGATAATCAATAATAAGC
ACGACTTGCATGGCTAATTTCCCTTTTTTCTTGTCACAACAAAGCATAAT
TGTTGGATAATTATGCTTGGCACCGGCGCGCGCATGCGCAAGAAGTCCAA
TCCTAATGGCAAGATAAAAACGACCTGCACTCGGGGCCTGGGCTTCGTAG
CCATTGTGGGGTTCAGTTGGGGACTTTTTATCCTAACACGCCTCGCAGGG
CCGGTCTTGGCGCCCATTTCGCGCGAAGGCAGTGAGAATCGCAACGCGCT
TGACACATTGGCGTCCGTGCCGCCTGCTAAGAACGACCCTTCGATGTGGC
AGTGGAACGAGGCCCCGGAGGACGACCGCCTCTACCTGGTCTTCTCCACG
GACTGCTCGGGTTATCAAAACTGGCAATCCCTTGCTGTATTCTTCACTGC
TGATGCCGTTCGACAGCCAGGGACGATCGTGCGCATCGCGAGTGGGTGCT
CAGAGGCCGAGAAGAAGGAGGTCCAGAAGCTCTACGACACATTTCCCGTC
CGCTTTCAGGTGCATTTCACCCCCAATTTCAAAAAGGACGCCAAGAGTGG
CAAGTCATATGACTTCTACAATAAACCGTATGGTCTTCAACATTGGTTGG
ACAGCAAAGCAGCTCCGAAGCATAAGGACGCCATCGTCGCGCTGCTCGAC
CCAGACTTCCTCTTCATGCGTCCTCTCACGTACAAAGTGAAACAAGACAG
GGTGCTCTACTCCCCTCCGGTCACTGACGGGGACCTCATCGACGAAGTTC
GCGAGGGTCATCCAGTCGCGCAATATTACGGCATCGGCTCGCAATGGACC
AAGTTTAAAGTCGAGTACATCGCGGGCAAGGACTCGCCAGCCTCGAAAGT
GAGCATCTCGGACGCGAGCCGCTACTACTCCGTGGGAGCTCCCTACATCG
CTCACGTCAAGGACATGCGCAAGATCGCTGAGAGCTGGGCCAACTTCGTC
CCCAGGGTCTATGAGGAGTACCCTCACCTGCTCGCCGAGATGTACGCCTA
CTCCATCGCCGCCGCCCACCTGGAGCTCCCGCACCTGCGCCTGGACCACT
ACATGGTGAGCAATACCCAGGCCGCGGGGGAGGGATGGCCCTTTGTTGAC
AGGCTTACGGACAAGTACGTTTGCAGCGCCGAGGCGCCCGATCAGGGGCA
GGAGCAGCCGGTCTTCCTGCACTACTGCCAGTTCTACCGCGTCGAGCACT
GGGGGTTCCACAAGCGGCGAGTGGCCACTAACCTATTCACGTGCAAGAGT
CCCCTGTTCATAATGCCCCCCGAGGACCTGGAGGACACGCATTGGAAGGA
CAATGGGGACAAGAAGACGATGTACTCCAAGCAGGAGGCCCAGCGCGCTG
CATACATGTTGTGCAACGTGATCAGGAAGCTGAATGGGGCTGCAGTCAAG
TTCAAAAATCTGAACTGTTTAGCGGGCTCGGCAAATTACACTCAGGAAAT
CAAGATTTGGTAAAAAAGGGTATGGCAGCAAAGCTTCGAAACTTCAAGGC
CTGAAGCATAAATGAAATGCGCGACAAATACCGGTCGGTCTCAATATATC
ACCGACTGAGAAAAGAGTTTAAAGTATACAATATTAGAAAACAGGTTTGC
GTCTC
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Coding sequence (CDS) from alignment at KK037248.1:204646..206550-

>rna8258 ID=rna8258|Name=rna8258|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at KK037248.1:204646..206550- (Nannochloropsis gaditana)
ATGCTTGGCACCGGCGCGCGCATGCGCAAGAAGTCCAATCCTAATGGCAA
GATAAAAACGACCTGCACTCGGGGCCTGGGCTTCGTAGCCATTGTGGGGT
TCAGTTGGGGACTTTTTATCCTAACACGCCTCGCAGGGCCGGTCTTGGCG
CCCATTTCGCGCGAAGGCAGTGAGAATCGCAACGCGCTTGACACATTGGC
GTCCGTGCCGCCTGCTAAGAACGACCCTTCGATGTGGCAGTGGAACGAGG
CCCCGGAGGACGACCGCCTCTACCTGGTCTTCTCCACGGACTGCTCGGGT
TATCAAAACTGGCAATCCCTTGCTGTATTCTTCACTGCTGATGCCGTTCG
ACAGCCAGGGACGATCGTGCGCATCGCGAGTGGGTGCTCAGAGGCCGAGA
AGAAGGAGGTCCAGAAGCTCTACGACACATTTCCCGTCCGCTTTCAGGTG
CATTTCACCCCCAATTTCAAAAAGGACGCCAAGAGTGGCAAGTCATATGA
CTTCTACAATAAACCGTATGGTCTTCAACATTGGTTGGACAGCAAAGCAG
CTCCGAAGCATAAGGACGCCATCGTCGCGCTGCTCGACCCAGACTTCCTC
TTCATGCGTCCTCTCACGTACAAAGTGAAACAAGACAGGGTGCTCTACTC
CCCTCCGGTCACTGACGGGGACCTCATCGACGAAGTTCGCGAGGGTCATC
CAGTCGCGCAATATTACGGCATCGGCTCGCAATGGACCAAGTTTAAAGTC
GAGTACATCGCGGGCAAGGACTCGCCAGCCTCGAAAGTGAGCATCTCGGA
CGCGAGCCGCTACTACTCCGTGGGAGCTCCCTACATCGCTCACGTCAAGG
ACATGCGCAAGATCGCTGAGAGCTGGGCCAACTTCGTCCCCAGGGTCTAT
GAGGAGTACCCTCACCTGCTCGCCGAGATGTACGCCTACTCCATCGCCGC
CGCCCACCTGGAGCTCCCGCACCTGCGCCTGGACCACTACATGGTGAGCA
ATACCCAGGCCGCGGGGGAGGGATGGCCCTTTGTTGACAGGCTTACGGAC
AAGTACGTTTGCAGCGCCGAGGCGCCCGATCAGGGGCAGGAGCAGCCGGT
CTTCCTGCACTACTGCCAGTTCTACCGCGTCGAGCACTGGGGGTTCCACA
AGCGGCGAGTGGCCACTAACCTATTCACGTGCAAGAGTCCCCTGTTCATA
ATGCCCCCCGAGGACCTGGAGGACACGCATTGGAAGGACAATGGGGACAA
GAAGACGATGTACTCCAAGCAGGAGGCCCAGCGCGCTGCATACATGTTGT
GCAACGTGATCAGGAAGCTGAATGGGGCTGCAGTCAAGTTCAAAAATCTG
AACTGTTTAGCGGGCTCGGCAAATTACACTCAGGAAATCAAGATTTGGTA
A
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Synonyms
Publications