rna8256, rna8256 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8256
Unique Name	rna8256
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2795
Alignment location	KK037248.1:199416..202344 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g66.3452.mrna
Orig protein id	gnl\|cribi\|Naga_100011g66.3452
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:199416..202344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g66	gene7996	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8256	rna8256-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22452.1	cds8232	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:199416..202344+
coding sequence from alignment at KK037248.1:199416..202344+

mRNA sequence

>rna8256 ID=rna8256|Name=rna8256|organism=Nannochloropsis gaditana|type=mRNA|length=2795bp
GTCCGCCGGCGGGGTTCTTCCGCACGACTTGGTGATGATGGTGCCTTTAT
GCAGCATATCTCCAACCATTCCCAACCAATGCGTCATCATTACCAATACT
AATTCCTCGGCTTACTCATACTATTGCAATGCTATTTCTCGCGCAGATTG
ACTGCATGATCATGCACTGAGGCGTGCCGCCAACGTTGCGCTGACGCTTC
TTATCCTTCTATACCTTGGATGCCAGCACTCCTAGACCGACTCATACCAT
GAGCGGTAGTGGCAAAGCTTCCATCGCGTGTCAGGCACGCGCTTTTTATG
GTGTGGGGAAGTACGAAAAGGCGTTGGAATGCCTTCAACAGCTGTCTATG
CAGCCTGGGGGAGGGGACGACCCACGCCTGCAAGGCAATTTGGTGTTGAC
AGAACATGCCAAGGGCGGTTTCAAACGCCCTCTGATTATAAAAGATCGTA
TTACGACGTTGAGAAACTCTCTTAAGACACGGTCTGAAAAGGTTGGCAGT
GTCCAAGGAGCTTTCAGGGCCAAAGAATCCCTTCGCCTCGACGCGGAGGA
CGAGGACGGCGACGAGGAAGCAGACGACACCGAGACGGACACCTCCGTCC
TGCTCTACAATCTTGCAGCTCTGAATTTTCACGAGAAGCAGTACGGAGCG
TCTCAGCATATATTGCACGCCTTGTTCGCCCGCATCGAAGTCCTGGAAGA
ACCTTTAGCGGTGCAGGTCTGCTTCCTCTTCCTCGACGTGCTCCTGCATA
GCGCGCGGGGCAATATACACACAGTAAAAGATCGTGAACGCCTTTCCCAC
AACACGGCTGCACTTTTGGCGTATCTGGAGCGACCGCACGCATTTAGTTC
CACGGCTCTGGCCGCGTCAGAGATGGAAGACAAGAACGGCAACGGCAGTG
CGGAGAGCCTCGTCGGCTCGGGCAAGGGCCTAGAGACGGCTGAATTTACC
TTCCGCCTGCACTTGTACAAGGCAAAGGTGCGACTGCTTCTGAGGGATAT
CAAGTCCTCAAAAAAGGAGCTGAAAAGCGCCCTGGAGATATTTCAGCGGG
AGTTGCGGCCCAACCCGGCAGACCCTTCGGCGTCGGGTAAGGGGGGCGCG
CTCGGGGGCGGAGACTCGGATGACGAGGTGGCCACAGCCGCTTCCACGGC
CACCACGGCAGGCAACACTCTGATGGGGGGATATGATGCCTCGCTGCCGC
CCGCCGGAGTTGCAAATGTGGCGGGCTTGTACCTGAAGGCCAACCTGGAG
TACCTGCGGCAGAACTACCGGAAGGCGCTGAAGCTCTTGGCCTCCTGCCA
CCGGGGGGAGGACAGCGCGATGGGCGCTGCCTACCTGAATGACATGGGCT
GCTTGCATTCGAAGATGGGTCTGCACTCAGTGGCCCTGCAATACTTTCAA
AGGGCGGTGGCCTCCTCAGGCCAAGATCGACCGGCCAGCGCCAACGGCTC
CCCGGCAGGCGAGACCCCCGGCATGCCCCTCTTGCCCGGCGGCCGGCCCC
TGGAGACGGATGGCCGCGTCCTCCCGCATACGTTCTGCGAAATTGCCTAC
AACACAGGCCTGCAACTCCTCATCCTCGGCCGCTCCGTACAGGCTTTCCG
GTGCTTCGAGAACGCCTCTTTGGTCTTCTACAACCGCCCGCGCGTCTGGC
TGCGGATGGCCGAGTGTTGCGTGCACGCGTACCGGGAGGAGGAGGGCCGG
CGCGAGGGTCCGGTGCGCGACCGCTTGGTCAGGCGGGTGGTGGGTCGGGG
CCCGCACCGGCGCTTGGTGCTAGCGACGAGGAGGGGCGGCGACTGCCGCG
AGTTTCAGGGCGGGGACGGCGCGGGAGGAGCAAGAGGCGGTGGTTTAGAT
GGGAGCGTCGGGGAGGAAGCACGGGGCCGGTGTACGCTTATTTATGCCGT
CAAATGCCTGCAAAACGCGCTCTTCCTTCTCTCAGTCGCCTCCCAGGGGG
GCGGCCGGTCGCGGCTGCCCATGACCTCTCTGCTGGGCGGAAGTAAATTG
GCAGGGGCTGGGGAGACAGGCGGGGAGGGTGGAAGCCTGGACACAAGCAA
CGGGAGTGTGGGTGGCGGTGAGCAGCACGAGACCTCGGCACTGGGGGGCA
GCACGGGTGCCGCATATGCAAGCGCAGACAAGAAAAGGGGATCTTGGCAG
GAGCAAGGCGACGCTCAGGTAGAGCAGGTCGTCCTTCTGACGCTCTCCTA
CGTCTATCTTTGCCTGCACGAGCCCGTCTTGGCCCTGCATTACGCAGAGC
TCCTCCTCACCCGGGGGGCGGGATGGGCGGAGGACGAGGGCAATCGAGTG
GCCGCCCGTACCTACGCGGCGGAGGCCCTGTGTGTCCTGGGCCGGCCTGA
CGAGGCCTTGAAGCACCTGCTGCCGGGTGGCACTCCGCTCTCCGAGGAGG
TAGGGGTAAGCTCATTGCAGAAGCAGTGCCAAGCCGAAAGCAAGAGGGTT
GTGGTAACGGCGGAGTCCTTCCTACCGCCCGAGCATTTCGCTGCTCGTGC
CCGATGCGCCCTTCACCTCAATCTTGCCAACGTCTACCTGCTGCAGAACA
ACCTGGCGGCTGCCGAAAAATGTGTCGGATTGGGTCTCGCCGCCTGCCCA
ACCAGTCCGGACGCCCTGCGCTGCCTGGTATTCATCCTGCTGCGCACTGG
GAACACGTCCGCGGCTCTGGAAGCTCTCAAGTCCAGGAGGCCCCTGAGCT
TGAGCGTGCCTCCTTCACCCAGCACAATGCCGCCACTGCCCGTGCATCGG
TAATTAAGGAAAAGAGAGAGAGTTGGATGAAAGAGAAGTGCTTTA

protein sequence of rna8256

>rna8256-protein ID=rna8256-protein|Name=rna8256|organism=Nannochloropsis gaditana|type=polypeptide|length=834bp
MKRGRLVIVEDEDNTHLSSTSAHSSARLVKVDAETGHVEIFPARKSLATR
HVAPESAHEDAFHSDPPGIGEVPATVEESNAILFPVVGKPSLCFSIIPML
FLFAVLLFAFRLCRARERLRRTGSGAGHTCVSRQILAAVLTPLTFTNKIV
KWCLEGHAAGLDREGDVREQAERARRALDRALARDEALGARDALRRLSQL
AESPDFPLWMREIADPLEEEAWEVEEREEYQDELVRGLTAAMARCEEALG
ATRQRLSHQAHSCSLGLGVQRGMSPTSLVLSLPSAAGDQEMRLVGSLEKV
GEYCRGTGEAASRQARALVEEGESLLKRWFEAQDSPILGALSQDEVSAPF
LTLGPGSVSWKPTPFRDVELIRDRVGGEEVKEIVKSGDQGEKGASERAIL
SRREEAAGDPSEETDTRTATGGRAETEVVWAQEEAEEDRQGATRDSKVKQ
KGDGGGVGGEEVGNGSLLSHTLLTGVREGTERGMVVMGGGSGLLSVHREA
VEMDGPVSLLGAFKEELRRHAGAVRMVELQRTLEGRGHERRQRREESRRA
AEAERLRRLEGLRERGKDLMAVRACRAAGRLEAQEARRAGDQALFTYLLP
VSLVAFGLLVWVASLEEEMEGRRGPSLLLGALWRVPIHDLLYGDCLGPSP
TPSSTVSRVVQHHVKRFPGADRPTLPRASTLGLETLARWLDLALPSSIST
GVVGALEATGCYARRTLWLATNAGMLVLLHFVVGSLGLGPHRAKMHVAIL
LFCLKNAFARVTWRGLSSVRSILGFHFVLFALTAWKGFGRSFAHRHFLFR
RLIPLLAVMVGLLDGAIYVGPAAVSGSLQALRAL

mRNA from alignment at KK037248.1:199416..202344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8256 ID=rna8256|Name=rna8256|organism=Nannochloropsis gaditana|type=mRNA|length=2929bp|location=Sequence derived from alignment at KK037248.1:199416..202344+ (Nannochloropsis gaditana)
TTCCCCTCAAggagcctcctcttcgagcgTAGAGACGTGGGGTTGTGTGA
CGTGCTGATATCGAATCGCACCACACTGGTAAagtcctcccttcttctta
tTTTGTGCCTGTCCTATCTTTCTATGTCCTACCCTTCGCTGTCTACAGGG
AAAATGATAGCTTTGCAGTAGCCTTCTATCGCGCCTTCCATCATGAAGAG
GGGCCGCCTCGTAATagtggaagacgaggataACACTCATCTGAGCTCGA
CGTCAGCTCATTCTTCTGCACGGCTGGTCAAGGTTGATGCCGAGACAGGA
CACGTGGAGATTTTTCCGGCTCGAAAATCATTGGCAACGCGGCATGTGGC
TCCTGAGTCCGCACATGAAGATGCTTTCCATTCCGATCCCCCCGGTATCG
GAGAGGTCCCTGCCACAGTGGAGGAGTCGAACGCCATTTTGTTTCCTGTT
GTTGGAAAGCCGTCATTATGCTTTTCCATTATTCCAATGCTAttcctctt
cgccgtcctcctctttgccttcagaCTTTGCCGGGCACGGGAGCGATTGA
GAAGGACTGGAAGTGGGGCGGGCCACACGTGTGTCTCCCGACAAATATTG
GCCGCTGTCCTCACGCCCCTCACCTTCACCAATAAAATCGTAAAGTGGTG
CCTGGAAGGCCATGCGGCGGGTCTCgatcgggagggagacgtcaGGGAGC
AGGCCGAGCGCGCGCGGAGAGCCCTGGACAGGGCTCTGGCCCGAGACGAG
GCCCTGGGAGCCCGCGACGCCTTGCGCAGGCTGTCGCAGCTCGCCGAGAG
TCCGGACTTCCCGCTTTGGATGCGAGAGATCGCGGACccactggaggagg
aggcttgggaggtggaggaaagagaggagtACCAGGACGAGCTGGTTCGG
GGGCTGAccgcggccatggcgcggTGCGAGGAGGCCCTAGGCGCGACCCG
GCAGCGACTCAGCCACCAGGCTCATTCGTGCTCCCTAGGTCTTGGCGTGC
AGAGGGGCATGAGCCCCACGTCCCTCGTTCTGTCCCTTCCGTCCGCTGCC
GGCGACCAGGAGATGCGCTTGGTGGGGTCGCTTGAGAAAGTCGGAGAGTA
CTGTAGAGGAACGGGGGAGGCTGCGAGTCGACAGGCGCGTGCTCTTGTGG
AAGAAGGTGAGAGCCTTCTGAAGCGCTGGTTCGAAGCGCAGGACAGCCCC
ATCTTGGGCGCCCTCTCTCAGGACGAGGTCTCTGCCCCGTTCCTAACCTT
GGGGCCCGGCTCCGTGTCCTGGAAGCCCACACCCTTCCGAGACGTGGAGC
TCATCAGGGATagagtggggggggaggaggtcaaggagatAGTCAAATCG
GGAGaccagggggaaaagggggcgtCCGAGCGGGCTATTCtctcgaggag
ggaggaagccgcgggcGACCCCTCGGAGGAGACCGACACCAGGACggcga
caggaggaagggcggagacggaggtcGTGtgggcccaggaggaggctgag
gaggataGACAGGGGGCCACACGAGACTCGAAAGTAAAGCAGAAGGGAGA
CGGtggcggcgtgggaggcgaagaggttGGGAATGGCTCTCTGCTTAGCC
ATACCTTACTGACCGGCGTccgggaagggacagagcGAGGGATGGTTGTG
ATGGGCGGGGGTTCGGGTCTTTTGAGCGTACATCGCGAAGCTGTAGAAAT
GGACGGCCCAGTGTCCTTGCTCGGGGCcttcaaggaggagctgcgccGAC
ACGCGGGGGCGGTGCGTATGGTGGAGTTGCAGCGAACATTGGAAGGCCGG
GGGCACGAGAGGCGGCAACGTCGAGAAGAGAGCAGGCGCGCCGCGGAGGC
AGAGCGGCTGCGGCGCCTCGAGGGGCTCcgcgagagaggaaaggactTGA
TGGCGGTGCGGGCGTGCCGGGCAGCGGGGCGCCTGGAGGCTCAGGAGGCG
CGCCGGGCGGGGGACCAGGCCCTGTTCACTTACTTGCTGCCCGTCAGCCT
GGTCGCCTTCGGTCTTCTTGTCTGGGTGGCgtcgctggaagaggaaatgg
agggcaggcgcggcccctccctcctcctagGCGCTCTGTGGCGCGTGCCC
ATCCACGATCTCCTGTATGGAGACTGTCTGGGCCCatcgcccacgccctc
ctcgaccgtcTCCAGGGTGGTGCAGCACCACGTCAAGCGCTTCCCCGGCG
CAGACCGGCCGaccctcccccgggcctcCACCCTTGGACTGGAAACCCTC
GCACGATGGCTCGATCTGGCTCTTCCTTCAAGCATCAGCACGGGCGTGGT
CGGAGCTTTAGAAGCGACTGGGTGCTATGCGAGGCGCACTCTGTGGCTGG
CTACCAACGCAGGAATGCTTGTCTTGCTGCATTTCGTGGTCGGCAGCTTA
GGTCTGGGTCCGCACCGTGCCAAAATGCACGTGGCTATTCTATTGTTCTG
CTTAAAAAACGCCTTCGCCCGCGTCACTTGGCGCGGTCTCTCATCCGTTC
GAAGTATTTTGGGGTTTcatttcgtcctcttcgctttGACGGCTTGGAAG
GGCTTCGGTCGTTCATTTGCCCATCGCCATTTCCTCTTTCGCCGCTTAAT
TCCACTCCTGGCTGTGATGGTTGGGTTGTTGGATGGAGCCATATACGTGG
GCCCAGCAGCAGTATCTGGAAGTCTACAAGCATTAAGGGCCCTGTAAAGC
TTCTGTAACCTGAGCGATTAAATCAAAAGTGTGAATAAGAAAGTAGGCCC
GTGCAGGCATAAGAGTATGAGGATGTACACAAAACTTCACAAAGAGAGCA
ATTTCGACCATCTACAGTGTATATGTAACTTTATAGTCTAACGTAAGGTC
AGTTGCATGCTTCTCTCTACGCTAGCGTTTAAGATTTTTTTGAAAACCAC
GATAGCTCGCACTGTGACTACGCATCCCA

Coding sequence (CDS) from alignment at KK037248.1:199416..202344+

>rna8256 ID=rna8256|Name=rna8256|organism=Nannochloropsis gaditana|type=CDS|length=2505bp|location=Sequence derived from alignment at KK037248.1:199416..202344+ (Nannochloropsis gaditana)
ATGAAGAGGGGCCGCCTCGTAATagtggaagacgaggataACACTCATCT
GAGCTCGACGTCAGCTCATTCTTCTGCACGGCTGGTCAAGGTTGATGCCG
AGACAGGACACGTGGAGATTTTTCCGGCTCGAAAATCATTGGCAACGCGG
CATGTGGCTCCTGAGTCCGCACATGAAGATGCTTTCCATTCCGATCCCCC
CGGTATCGGAGAGGTCCCTGCCACAGTGGAGGAGTCGAACGCCATTTTGT
TTCCTGTTGTTGGAAAGCCGTCATTATGCTTTTCCATTATTCCAATGCTA
ttcctcttcgccgtcctcctctttgccttcagaCTTTGCCGGGCACGGGA
GCGATTGAGAAGGACTGGAAGTGGGGCGGGCCACACGTGTGTCTCCCGAC
AAATATTGGCCGCTGTCCTCACGCCCCTCACCTTCACCAATAAAATCGTA
AAGTGGTGCCTGGAAGGCCATGCGGCGGGTCTCgatcgggagggagacgt
caGGGAGCAGGCCGAGCGCGCGCGGAGAGCCCTGGACAGGGCTCTGGCCC
GAGACGAGGCCCTGGGAGCCCGCGACGCCTTGCGCAGGCTGTCGCAGCTC
GCCGAGAGTCCGGACTTCCCGCTTTGGATGCGAGAGATCGCGGACccact
ggaggaggaggcttgggaggtggaggaaagagaggagtACCAGGACGAGC
TGGTTCGGGGGCTGAccgcggccatggcgcggTGCGAGGAGGCCCTAGGC
GCGACCCGGCAGCGACTCAGCCACCAGGCTCATTCGTGCTCCCTAGGTCT
TGGCGTGCAGAGGGGCATGAGCCCCACGTCCCTCGTTCTGTCCCTTCCGT
CCGCTGCCGGCGACCAGGAGATGCGCTTGGTGGGGTCGCTTGAGAAAGTC
GGAGAGTACTGTAGAGGAACGGGGGAGGCTGCGAGTCGACAGGCGCGTGC
TCTTGTGGAAGAAGGTGAGAGCCTTCTGAAGCGCTGGTTCGAAGCGCAGG
ACAGCCCCATCTTGGGCGCCCTCTCTCAGGACGAGGTCTCTGCCCCGTTC
CTAACCTTGGGGCCCGGCTCCGTGTCCTGGAAGCCCACACCCTTCCGAGA
CGTGGAGCTCATCAGGGATagagtggggggggaggaggtcaaggagatAG
TCAAATCGGGAGaccagggggaaaagggggcgtCCGAGCGGGCTATTCtc
tcgaggagggaggaagccgcgggcGACCCCTCGGAGGAGACCGACACCAG
GACggcgacaggaggaagggcggagacggaggtcGTGtgggcccaggagg
aggctgaggaggataGACAGGGGGCCACACGAGACTCGAAAGTAAAGCAG
AAGGGAGACGGtggcggcgtgggaggcgaagaggttGGGAATGGCTCTCT
GCTTAGCCATACCTTACTGACCGGCGTccgggaagggacagagcGAGGGA
TGGTTGTGATGGGCGGGGGTTCGGGTCTTTTGAGCGTACATCGCGAAGCT
GTAGAAATGGACGGCCCAGTGTCCTTGCTCGGGGCcttcaaggaggagct
gcgccGACACGCGGGGGCGGTGCGTATGGTGGAGTTGCAGCGAACATTGG
AAGGCCGGGGGCACGAGAGGCGGCAACGTCGAGAAGAGAGCAGGCGCGCC
GCGGAGGCAGAGCGGCTGCGGCGCCTCGAGGGGCTCcgcgagagaggaaa
ggactTGATGGCGGTGCGGGCGTGCCGGGCAGCGGGGCGCCTGGAGGCTC
AGGAGGCGCGCCGGGCGGGGGACCAGGCCCTGTTCACTTACTTGCTGCCC
GTCAGCCTGGTCGCCTTCGGTCTTCTTGTCTGGGTGGCgtcgctggaaga
ggaaatggagggcaggcgcggcccctccctcctcctagGCGCTCTGTGGC
GCGTGCCCATCCACGATCTCCTGTATGGAGACTGTCTGGGCCCatcgccc
acgccctcctcgaccgtcTCCAGGGTGGTGCAGCACCACGTCAAGCGCTT
CCCCGGCGCAGACCGGCCGaccctcccccgggcctcCACCCTTGGACTGG
AAACCCTCGCACGATGGCTCGATCTGGCTCTTCCTTCAAGCATCAGCACG
GGCGTGGTCGGAGCTTTAGAAGCGACTGGGTGCTATGCGAGGCGCACTCT
GTGGCTGGCTACCAACGCAGGAATGCTTGTCTTGCTGCATTTCGTGGTCG
GCAGCTTAGGTCTGGGTCCGCACCGTGCCAAAATGCACGTGGCTATTCTA
TTGTTCTGCTTAAAAAACGCCTTCGCCCGCGTCACTTGGCGCGGTCTCTC
ATCCGTTCGAAGTATTTTGGGGTTTcatttcgtcctcttcgctttGACGG
CTTGGAAGGGCTTCGGTCGTTCATTTGCCCATCGCCATTTCCTCTTTCGC
CGCTTAATTCCACTCCTGGCTGTGATGGTTGGGTTGTTGGATGGAGCCAT
ATACGTGGGCCCAGCAGCAGTATCTGGAAGTCTACAAGCATTAAGGGCCC
TGTAA

Synonyms

Publications