rna8255, rna8255 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8255
Unique Name	rna8255
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1558
Alignment location	KK037248.1:196419..199213 -

Link to JBrowse

Properties


Property Name	Value
Product	ccr4-not transcription complex subunit 10-like protein
Orig transcript id	gnl\|cribi\|Naga_100011g65.3463.mrna
Orig protein id	gnl\|cribi\|Naga_100011g65.3463
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:196419..199213 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g65	gene7995	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22463.1	cds8231	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8255	rna8255-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:196419..199213-
coding sequence from alignment at KK037248.1:196419..199213-

mRNA sequence

>rna8255 ID=rna8255|Name=rna8255|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp
GCCCGCGGTCTCACAGCGCAATACTTTCACAATCCTCCACACAGTACCAC
GAGAATGGGGGGCTCCACTGTCACTCGGAGCCGGCGAACTGCGGCAGCAC
GGAGGACCGGACTTTCGTCGAGCTTGCCTCCTTGCACACCTTTCAAGAAC
GCATTGACCATCAGAAGCCCGGCCGCTGCAACAGCCGAAGACTGTCCAAG
CCAACACGCACCCAAAGCTGCAGTCAAAAATCCTAGCTGCGTCAAATTGG
ATTTCGAAAAATCCTCCGTATCGCACTCCTCTACCGCGGTGGCCGCTGCC
GTTGCACTTGATGTTTGTAAACCGGAATGTTCGGGCTCCGATAGGCGGGC
TTTGGTTTTGCCTGCAGGTCTTCCAACTTCTCCGGCCGCATCCTCGAGAC
TTCCTGCTAAAAAACAAACCGAGGGCACCAAAGTTGATGAAAGCTCATTC
GTTTTGAAACTCGAGACTCAGGACGTGGAGGAAGCGCGGCGCGCCGTCCG
CTACGCCAGGTTACACCAACGACCGTTGCTCCTGCGGGGTCTCTTCCGGG
AGACCGTGAAGAGCTTCACGCCCGATCAGCTCCAGTGCCTCCCAGAGGAT
GTCAAGGTGTGCGCGGATGACAAGACAGGAATCGGGTTTCAGCCTTTGCG
TGACTGGGGGGTTCCCCACAAGCGCGTTCGCAAACCTACCGCGGCGGCTG
TGAGAGTGGCGACGGCTAAGAAGGGAGGCAGCCGGGGCAGCGACTCGAGC
CAGAGCGGTAGCAGCAATCACAACGGAACAATTGAGGCGGAAGACAGTAC
CGGAAGCATGCCTAGCAACTGGGGTCGTATTGCCAGCATTATGAGCGAGA
AACCGCTGCAGACTCGGCTGTGGGCCCGCTTCATGCAGAAGGATTTGTTT
GCTTTCCGCACCAAAACCGGACACAGCGCTCTCGCGGACTTCGCTGCTTC
GATACATCAAGGTTGTAAGCCCATGTCGAGCAACATGATAGTCACAGGAA
ATGCAGCGCCTTCTGCCGCTGGGCGGTGCTTCGAGATGAAGTCCGATGCG
CACCAAGACGAGTACCACAACTTCATGGTGGTCGCCTCGGGTGCGAAAAT
CTGGGCCTTGGCCGCCCTGACAGAGGAACAAGTGGCAAAGGGTCGCAAGA
CGAAGGGAAGGTTGAGCAGCTCGTTTCGCCTGGACGCGGTGGACCGGACG
AAGAACCGGACACCCGAGGAGCACGAGGTGGCCGGCCTGTTCGAGACCGT
CTGGATGGGCCCCGGCGACGTCCTCTTCAACCCAGCCTGGGTCTGGCACC
AGGTCAACAGCGAACCGCAGACGCTGGCGTACAGTGTCATGTACCCCGTA
GGGGGGGGTGGCAAGGACGCCCGTGTTGGAAACGAGGGACGCTGACAGCT
TCTGTTTCCTGGTAGGAGAGCGATGAGATGAAGAGCTCGACACGTGGTTC
AACAGGGAGTCAATGTTAGAGAAAGAAGACCAAAGGCCCTCATAAACAAA
TCAAAGTAGAATTTACCGAGGAAGTGCCGTGTGAGGAATTACAAACCGTT
GCCCGCCA

protein sequence of rna8255

>rna8255-protein ID=rna8255-protein|Name=rna8255|organism=Nannochloropsis gaditana|type=polypeptide|length=834bp
MSGSGKASIACQARAFYGVGKYEKALECLQQLSMQPGGGDDPRLQGNLVL
TEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGSVQGAFRAKESLRLDAE
DEDGDEEADDTETDTSVLLYNLAALNFHEKQYGASQHILHALFARIEVLE
EPLAVQVCFLFLDVLLHSARGNIHTVKDRERLSHNTAALLAYLERPHAFS
STALAASEMEDKNGNGSAESLVGSGKGLETAEFTFRLHLYKAKVRLLLRD
IKSSKKELKSALEIFQRELRPNPADPSASGKGGALGGGDSDDEVATAAST
ATTAGNTLMGGYDASLPPAGVANVAGLYLKANLEYLRQNYRKALKLLASC
HRGEDSAMGAAYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANG
SPAGETPGMPLLPGGRPLETDGRVLPHTFCEIAYNTGLQLLILGRSVQAF
RCFENASLVFYNRPRVWLRMAECCVHAYREEEGRREGPVRDRLVRRVVGR
GPHRRLVLATRRGGDCREFQGGDGAGGARGGGLDGSVGEEARGRCTLIYA
VKCLQNALFLLSVASQGGGRSRLPMTSLLGGSKLAGAGETGGEGGSLDTS
NGSVGGGEQHETSALGGSTGAAYASADKKRGSWQEQGDAQVEQVVLLTLS
YVYLCLHEPVLALHYAELLLTRGAGWAEDEGNRVAARTYAAEALCVLGRP
DEALKHLLPGGTPLSEEVGVSSLQKQCQAESKRVVVTAESFLPPEHFAAR
ARCALHLNLANVYLLQNNLAAAEKCVGLGLAACPTSPDALRCLVFILLRT
GNTSAALEALKSRRPLSLSVPPSPSTMPPLPVHR

mRNA from alignment at KK037248.1:196419..199213-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8255 ID=rna8255|Name=rna8255|organism=Nannochloropsis gaditana|type=mRNA|length=2795bp|location=Sequence derived from alignment at KK037248.1:196419..199213- (Nannochloropsis gaditana)
GTCCGCCGGCGGGGTTCTTCCGCACGACTTGGTGATGATGGTGCCTTTAT
GCAGCATATCTCCAACCATTCCCAACCAATGCGTCATCATTACCAATACT
AATTCCTCGGCTTACTCATACTATTGCAATGCTATTTCTCGCGCAGATTG
ACTGCATGATCATGCACTGAGGCGTGCCGCCAACGTTGCGCTGACGCTTC
TTATCCTTCTATACCTTGGATGCCAGCACTCCTAGACCGACTCATACCAT
GAGCGGTAGTGGCAAAGCTTCCATCGCGTGTCAGGCACGCGCTTTTTATG
GTGTGGGGAAGTACGAAAAGGCGTTGGAATGCCTTCAACAGCTGTCTATG
CAGCCTGGGGGAGGGGACGACCCACGCCTGCAAGGCAATTTGGTGTTGAC
AGAACATGCCAAGGGCGGTTTCAAACGCCCTCTGATTATAAAAGATCGTA
TTACGACGTTGAGAAACTCTCTTAAGACACGGTCTGAAAAGGTTGGCAGT
GTCCAAGGAGCTTTCAGGGCCAAAGAATCCCTTCGCCTCGACGCGGAGGA
CGAGGACGGCGACGAGGAAGCAGACGACACCGAGACGGACACCTCCGTCC
TGCTCTACAATCTTGCAGCTCTGAATTTTCACGAGAAGCAGTACGGAGCG
TCTCAGCATATATTGCACGCCTTGTTCGCCCGCATCGAAGTCCTGGAAGA
ACCTTTAGCGGTGCAGGTCTGCTTCCTCTTCCTCGACGTGCTCCTGCATA
GCGCGCGGGGCAATATACACACAGTAAAAGATCGTGAACGCCTTTCCCAC
AACACGGCTGCACTTTTGGCGTATCTGGAGCGACCGCACGCATTTAGTTC
CACGGCTCTGGCCGCGTCAGAGATGGAAGACAAGAACGGCAACGGCAGTG
CGGAGAGCCTCGTCGGCTCGGGCAAGGGCCTAGAGACGGCTGAATTTACC
TTCCGCCTGCACTTGTACAAGGCAAAGGTGCGACTGCTTCTGAGGGATAT
CAAGTCCTCAAAAAAGGAGCTGAAAAGCGCCCTGGAGATATTTCAGCGGG
AGTTGCGGCCCAACCCGGCAGACCCTTCGGCGTCGGGTAAGGGGGGCGCG
CTCGGGGGCGGAGACTCGGATGACGAGGTGGCCACAGCCGCTTCCACGGC
CACCACGGCAGGCAACACTCTGATGGGGGGATATGATGCCTCGCTGCCGC
CCGCCGGAGTTGCAAATGTGGCGGGCTTGTACCTGAAGGCCAACCTGGAG
TACCTGCGGCAGAACTACCGGAAGGCGCTGAAGCTCTTGGCCTCCTGCCA
CCGGGGGGAGGACAGCGCGATGGGCGCTGCCTACCTGAATGACATGGGCT
GCTTGCATTCGAAGATGGGTCTGCACTCAGTGGCCCTGCAATACTTTCAA
AGGGCGGTGGCCTCCTCAGGCCAAGATCGACCGGCCAGCGCCAACGGCTC
CCCGGCAGGCGAGACCCCCGGCATGCCCCTCTTGCCCGGCGGCCGGCCCC
TGGAGACGGATGGCCGCGTCCTCCCGCATACGTTCTGCGAAATTGCCTAC
AACACAGGCCTGCAACTCCTCATCCTCGGCCGCTCCGTACAGGCTTTCCG
GTGCTTCGAGAACGCCTCTTTGGTCTTCTACAACCGCCCGCGCGTCTGGC
TGCGGATGGCCGAGTGTTGCGTGCACGCGTACCGGGAGGAGGAGGGCCGG
CGCGAGGGTCCGGTGCGCGACCGCTTGGTCAGGCGGGTGGTGGGTCGGGG
CCCGCACCGGCGCTTGGTGCTAGCGACGAGGAGGGGCGGCGACTGCCGCG
AGTTTCAGGGCGGGGACGGCGCGGGAGGAGCAAGAGGCGGTGGTTTAGAT
GGGAGCGTCGGGGAGGAAGCACGGGGCCGGTGTACGCTTATTTATGCCGT
CAAATGCCTGCAAAACGCGCTCTTCCTTCTCTCAGTCGCCTCCCAGGGGG
GCGGCCGGTCGCGGCTGCCCATGACCTCTCTGCTGGGCGGAAGTAAATTG
GCAGGGGCTGGGGAGACAGGCGGGGAGGGTGGAAGCCTGGACACAAGCAA
CGGGAGTGTGGGTGGCGGTGAGCAGCACGAGACCTCGGCACTGGGGGGCA
GCACGGGTGCCGCATATGCAAGCGCAGACAAGAAAAGGGGATCTTGGCAG
GAGCAAGGCGACGCTCAGGTAGAGCAGGTCGTCCTTCTGACGCTCTCCTA
CGTCTATCTTTGCCTGCACGAGCCCGTCTTGGCCCTGCATTACGCAGAGC
TCCTCCTCACCCGGGGGGCGGGATGGGCGGAGGACGAGGGCAATCGAGTG
GCCGCCCGTACCTACGCGGCGGAGGCCCTGTGTGTCCTGGGCCGGCCTGA
CGAGGCCTTGAAGCACCTGCTGCCGGGTGGCACTCCGCTCTCCGAGGAGG
TAGGGGTAAGCTCATTGCAGAAGCAGTGCCAAGCCGAAAGCAAGAGGGTT
GTGGTAACGGCGGAGTCCTTCCTACCGCCCGAGCATTTCGCTGCTCGTGC
CCGATGCGCCCTTCACCTCAATCTTGCCAACGTCTACCTGCTGCAGAACA
ACCTGGCGGCTGCCGAAAAATGTGTCGGATTGGGTCTCGCCGCCTGCCCA
ACCAGTCCGGACGCCCTGCGCTGCCTGGTATTCATCCTGCTGCGCACTGG
GAACACGTCCGCGGCTCTGGAAGCTCTCAAGTCCAGGAGGCCCCTGAGCT
TGAGCGTGCCTCCTTCACCCAGCACAATGCCGCCACTGCCCGTGCATCGG
TAATTAAGGAAAAGAGAGAGAGTTGGATGAAAGAGAAGTGCTTTA

Coding sequence (CDS) from alignment at KK037248.1:196419..199213-

>rna8255 ID=rna8255|Name=rna8255|organism=Nannochloropsis gaditana|type=CDS|length=2505bp|location=Sequence derived from alignment at KK037248.1:196419..199213- (Nannochloropsis gaditana)
ATGAGCGGTAGTGGCAAAGCTTCCATCGCGTGTCAGGCACGCGCTTTTTA
TGGTGTGGGGAAGTACGAAAAGGCGTTGGAATGCCTTCAACAGCTGTCTA
TGCAGCCTGGGGGAGGGGACGACCCACGCCTGCAAGGCAATTTGGTGTTG
ACAGAACATGCCAAGGGCGGTTTCAAACGCCCTCTGATTATAAAAGATCG
TATTACGACGTTGAGAAACTCTCTTAAGACACGGTCTGAAAAGGTTGGCA
GTGTCCAAGGAGCTTTCAGGGCCAAAGAATCCCTTCGCCTCGACGCGGAG
GACGAGGACGGCGACGAGGAAGCAGACGACACCGAGACGGACACCTCCGT
CCTGCTCTACAATCTTGCAGCTCTGAATTTTCACGAGAAGCAGTACGGAG
CGTCTCAGCATATATTGCACGCCTTGTTCGCCCGCATCGAAGTCCTGGAA
GAACCTTTAGCGGTGCAGGTCTGCTTCCTCTTCCTCGACGTGCTCCTGCA
TAGCGCGCGGGGCAATATACACACAGTAAAAGATCGTGAACGCCTTTCCC
ACAACACGGCTGCACTTTTGGCGTATCTGGAGCGACCGCACGCATTTAGT
TCCACGGCTCTGGCCGCGTCAGAGATGGAAGACAAGAACGGCAACGGCAG
TGCGGAGAGCCTCGTCGGCTCGGGCAAGGGCCTAGAGACGGCTGAATTTA
CCTTCCGCCTGCACTTGTACAAGGCAAAGGTGCGACTGCTTCTGAGGGAT
ATCAAGTCCTCAAAAAAGGAGCTGAAAAGCGCCCTGGAGATATTTCAGCG
GGAGTTGCGGCCCAACCCGGCAGACCCTTCGGCGTCGGGTAAGGGGGGCG
CGCTCGGGGGCGGAGACTCGGATGACGAGGTGGCCACAGCCGCTTCCACG
GCCACCACGGCAGGCAACACTCTGATGGGGGGATATGATGCCTCGCTGCC
GCCCGCCGGAGTTGCAAATGTGGCGGGCTTGTACCTGAAGGCCAACCTGG
AGTACCTGCGGCAGAACTACCGGAAGGCGCTGAAGCTCTTGGCCTCCTGC
CACCGGGGGGAGGACAGCGCGATGGGCGCTGCCTACCTGAATGACATGGG
CTGCTTGCATTCGAAGATGGGTCTGCACTCAGTGGCCCTGCAATACTTTC
AAAGGGCGGTGGCCTCCTCAGGCCAAGATCGACCGGCCAGCGCCAACGGC
TCCCCGGCAGGCGAGACCCCCGGCATGCCCCTCTTGCCCGGCGGCCGGCC
CCTGGAGACGGATGGCCGCGTCCTCCCGCATACGTTCTGCGAAATTGCCT
ACAACACAGGCCTGCAACTCCTCATCCTCGGCCGCTCCGTACAGGCTTTC
CGGTGCTTCGAGAACGCCTCTTTGGTCTTCTACAACCGCCCGCGCGTCTG
GCTGCGGATGGCCGAGTGTTGCGTGCACGCGTACCGGGAGGAGGAGGGCC
GGCGCGAGGGTCCGGTGCGCGACCGCTTGGTCAGGCGGGTGGTGGGTCGG
GGCCCGCACCGGCGCTTGGTGCTAGCGACGAGGAGGGGCGGCGACTGCCG
CGAGTTTCAGGGCGGGGACGGCGCGGGAGGAGCAAGAGGCGGTGGTTTAG
ATGGGAGCGTCGGGGAGGAAGCACGGGGCCGGTGTACGCTTATTTATGCC
GTCAAATGCCTGCAAAACGCGCTCTTCCTTCTCTCAGTCGCCTCCCAGGG
GGGCGGCCGGTCGCGGCTGCCCATGACCTCTCTGCTGGGCGGAAGTAAAT
TGGCAGGGGCTGGGGAGACAGGCGGGGAGGGTGGAAGCCTGGACACAAGC
AACGGGAGTGTGGGTGGCGGTGAGCAGCACGAGACCTCGGCACTGGGGGG
CAGCACGGGTGCCGCATATGCAAGCGCAGACAAGAAAAGGGGATCTTGGC
AGGAGCAAGGCGACGCTCAGGTAGAGCAGGTCGTCCTTCTGACGCTCTCC
TACGTCTATCTTTGCCTGCACGAGCCCGTCTTGGCCCTGCATTACGCAGA
GCTCCTCCTCACCCGGGGGGCGGGATGGGCGGAGGACGAGGGCAATCGAG
TGGCCGCCCGTACCTACGCGGCGGAGGCCCTGTGTGTCCTGGGCCGGCCT
GACGAGGCCTTGAAGCACCTGCTGCCGGGTGGCACTCCGCTCTCCGAGGA
GGTAGGGGTAAGCTCATTGCAGAAGCAGTGCCAAGCCGAAAGCAAGAGGG
TTGTGGTAACGGCGGAGTCCTTCCTACCGCCCGAGCATTTCGCTGCTCGT
GCCCGATGCGCCCTTCACCTCAATCTTGCCAACGTCTACCTGCTGCAGAA
CAACCTGGCGGCTGCCGAAAAATGTGTCGGATTGGGTCTCGCCGCCTGCC
CAACCAGTCCGGACGCCCTGCGCTGCCTGGTATTCATCCTGCTGCGCACT
GGGAACACGTCCGCGGCTCTGGAAGCTCTCAAGTCCAGGAGGCCCCTGAG
CTTGAGCGTGCCTCCTTCACCCAGCACAATGCCGCCACTGCCCGTGCATC
GGTAA

Synonyms

Publications