rna825, rna825 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna825
Unique Name	rna825
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2532
Alignment location	CM002456.1:508068..510530 -

Link to JBrowse

Properties


Property Name	Value
Product	iduronate 2-sulfatase
Orig transcript id	gnl\|cribi\|Naga_100017g14.313.mrna
Orig protein id	gnl\|cribi\|Naga_100017g14.313
Gene	ITS3
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:508068..510530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ITS3	gene789	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29815.1	cds825	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna825	rna825-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:508068..510530-
coding sequence from alignment at CM002456.1:508068..510530-

mRNA sequence

>rna825 ID=rna825|Name=rna825|organism=Nannochloropsis gaditana|type=mRNA|length=2532bp
ATGTTTCAAGGTGGGAACCGTGCATTGGACAACACATTCGGGCACCGCGA
GTCTGGACTTATCTCCAATCCCTTCCCACACCAGAAGCAGAACACAGCGA
GTACGAGAAGCTCGGATAGCAACTATTCCGTCCGAGCTCGACCGTTGCAC
CCCGGACACCGTGTTGATAAAGCCTACATTCTGGCACCTGCGGGCGTGTC
TCCTCGCGGTGTGGCACAGAGAGACCGGGCAACGAGGCAGCCTCGAGGAG
AGGGCGACCCCATTTCAACAAGCTTAGTGGAGCTTCCACGCTTACAAGAA
GGGGTGGAGGATCCCACAGACCGCCCCGTTGAGGGCAAAATCTGTCAGAA
AGACGCCAGCCAGACGGAAGCGTCGTCGACCTCGTCTCCCAGTCATTTGG
AAGCCAGTCGTCGCGGGAGGAGTGCGAGCCCGTACAACGACGACCTCCGG
CCTCCCCCGGCGATGCAAACCGGGAAAAGCCTCCAGACGCATTGTGCTGA
GGAGATAACTGGCAGTCAGAGCAGCAGCGGAGGCGGCAGCAGTCATCTCG
CCTCGCCTCTTTCGTCGCCCAACCGACGTCGCTTGCTCCTCCTCCGACAG
AGTCGAGCCCGCTCCCACCAAGACGCCTGCCCGTCGACACGAAGCGCGAT
GGGTATGACCAGCGAGGGCGACGAAGGGCAAGATGAAATACTTTTTCATC
CACACGGGAAACAAACAGAAAACACTCCTTTTTTCAGACTTCAGTCGCCC
AAAGAAGTGCAGGCCGGCTTCTACATCTTCCTCTTGACCGGGATCTGCGC
CGTTTCCTCCCTCCTCTTTGGCTACGACACGGGCGTTGTCTCCGGCGCCT
TGCTTTCCATCCGGAACGACTTGCAACTCTCGGAATGGGAGCAGGAGCTC
ATCGTGAGCATCACCACCATCGGGGCAGTCGTCGGGTCCTTATCGGGAGG
TTTCTTGACCGAGCGAGCCGGCCGTCGGCCCGTAATCCTCCTCTCCTCTG
TTATCTTCACACTGGGCGCCGTGGTGATGGGGGCAGCGCCTTCGTTTTTC
CTCCTGACCTTGGGGCGGGCTGTGATCGGTCTCGCCATCGGGTTTTCCAG
CATGACCGTGCCCGTCTACATTGCCGAGGCCGCTCCTTCCTCCATCCGCG
GCCGGCTGGTGACCATCAATTGCATTTTCATCACGGGGGGGCAGTTTGTG
GCGGGGATGGTGGACGGCGGCTTTGCGGAGGTTCCGGGCGGGTGGCGGTA
CATGCTGGGCGTGGCGGCCATCCCCGCTGCCCTGCAGTTCATCGGGGTCC
TCTACCTCCCCGAGTCTCCCCGGTGGCTGGTGGCGCGAGGGCGCGTCAAC
GATGCCAAAGGGGTCTTGGAGAGGCTTCGGGCGTCGGAGGATATCGCCTT
CGAGCTCGCAGAAATCGAGGAAGACGTGGCGGCGACGGCGTCTTTGCCAC
GGGCACGGATGCGAGACCTGTGCACCTCCCCACCCATCCGGCGGGCAGTG
ACCCTCGGATGCGGCTTGATGCTGCTGCAACAGCTCTCGGGCATCAACAC
GGTGATGTACTATTCGGCCTCTATATACAATATGGCCGGGTTCTCCGACA
CCACGTCCATCTGGCTGGCGGGGTTCACGGCCTTGGCCCAGTTCGTGGGC
ATGCTCACGAACATGAGCCTGGTGGAGAGGTGGGGCCGTCGCACCCTGGT
GCTGACCTCGCTGAGCCTGGTGACCTTGTCGTTGGTGGTGATAGGCGCGA
GTTTTTACCTGGCCATGGCCTCGTCGCAGCCGGTCGGCGTGGTGGATCCG
TCATGCGCGCGCGTCCACAATGTCTTTGTCGGCTCCTTCCCCGTGACTAC
GTGTTTCCAGTGCGTCGAGAGCGCATCTTGCGGCTTTTGTCCTGCCTTGG
GGGCCTGCCTGCCGGGAAACAAGACGATGGACAGTTTGGGCACCTGTCCC
GTGGGGGACGGAACGGGTGTGGCAGGTCCCTGGGCGTACACGGTGTGCGA
GAACCCGTATGGGTACATGAGCGTGGCGAGCATGGTGCTTTACCTCTTCA
CGTTCGGACTGGGAATGGGAGCAATGCCCTGGACGATCTGCGCCGAGATT
TTCCCTTTGCATGTCCGCTCCTTGGCGAACAGTTTGACGACGAGCGTGAA
CTGGCTCGGGAACGTGATCATTTCTGCCACTTTTCTGACCATCGCCAGCC
CCCACGTTTTGACGCAATACGGGGCCTTTTGGATGTACGCCGTGATTGCC
CTCTCGGGGCTGATCGGACTGGCCTTCACTTTGCCGGAGACCAAAGGCGT
GCCGTTGGAGGAGATTGAGGCCCTCTTTATCAAGCCAGGGGATCGGATAC
GAGGGATGGACGAGAGAGTCACCGACATGCGGCAAGAAGCACGCCCGGTG
GCGATGGGAAAAGACACGGGGGAGGCGAGCTTTTGTCCTATCATATGGGC
TGAAGGGTGCTCGTTGACATCGGGAAGAGAGGAGAAGTGTACAATAAAGT
GTATGGGGAGAAAGCAATATATAAACGATTAG

protein sequence of rna825

>rna825-protein ID=rna825-protein|Name=rna825|organism=Nannochloropsis gaditana|type=polypeptide|length=608bp
MTLNRAHFVHNVCIKFFTALQLFTFLKLTIYTLTLFGHGFGIGVAAAPAT
TSCNPTSPCAENGSLAVKNILYIIIDDLTADLSLFGGKIDQAPIPNLQHR
LAPRAVNFLRAYAQQSVCGPSRNSFLSGRHPDETQSYTFKTSFRDTLPDA
VSLPQAFKNAGYLTCGFGKTFHDDGIPSPPDYDNPYSWSPECPYYAPEED
FCGEGQHGWCTPDMPEGNFTDGLVVDAAIERLRGHVHAQSVEGRGDRPFF
FAVGIRKPHLDWAVPKAYFDAQVSLRDVRLPSDSVRVAPPGMPAVAYYNC
STEPPWKLAMPEIVLSPHEPLQDELERELRRAYYAAVTWMDANVGKLLDA
LTELGLDENTAIVFHSDHGFHLSEEGMWCKQNTREIGTRVPLLVSAPGLT
VPSEARREKEQRETAGLSEAIVQLVDIYPTLLDLAGLTLPDPNMRGRSLI
PLMRRWGSGGNETENATGFGAAFSQYPRCASTSLAPSGLASQGYRWNRQC
AWLENDKIDVMGYSVRVEGWRYTEWYTWEARRARPRWNAAGLVAVELYAM
DMSRGKGVMEEMKMEDKVARNVANDVRYRQEQEHLSKLLYDHFSSFQPFA
MSADAVDT

mRNA from alignment at CM002456.1:508068..510530-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna825 ID=rna825|Name=rna825|organism=Nannochloropsis gaditana|type=mRNA|length=2463bp|location=Sequence derived from alignment at CM002456.1:508068..510530- (Nannochloropsis gaditana)
AAAAAATCACGACAGGTTGTGGTGAGAGCTCTGAAAGTGTGGGAGTTGTC
TGTGTCGACTTGTTCGAATTGAAGTGAGGGGGAGGTTATTCTGATTCAAA
TGCGATCCCAAAAGCCTGAAGGGACGCGACCTTTACGGTTAGGCATAAAC
GTCGTGCCACCTGCATGGTGAACCTCATGTCCACCATTGTTGCCTGTGGG
ACGAAGCAGTGGATTCCTCAGTTTCCTTTATCACTTGCTTTCATATACCT
CCGCTCACACGGGAGCGTGGGGATTCGGTTCTCAGCACTCCTCTGCAACA
GAATTTTCTAACTCGATGCCATCATTTTTCAATCATTTTATGTATCAACA
AAGCGTCGACACTCAAAAAGCTCTTCGCTGTAACGTCTTTACTATCAATA
CCAGCCAGAGCGTTGGGAACTGGCGGACACATGACTTTGAACCGAGCACA
TTTCGTGCATAACGTTTGCATCAAGTTTTTCACGGCGCTTCAACTCTTCA
CCTTTTTAAAGTTGACAATATATACTTTGACGCTCTTTGGTCATGGTTTC
GGTATCGGAGTAGCCGCCGCCCCGGCCACGACGTCTTGCAATCCCACATC
TCCTTGCGCGGAGAACGGTTCTCTCGCAGTGAAGAACATACTGTACATAA
TCATAGACGATTTGACGGCCGATTTGTCACTTTTTGGTGGAAAAATAGAT
CAAGCTCCCATTCCTAATCTGCAACATCGACTTGCTCCTCGTGCCGTGAA
CTTTCTGCGTGCGTATGCACAGCAAAGCGTGTGCGGGCCTTCGCGCAATT
CATTTCTCTCAGGGCGGCATCCCGACGAGACACAGTCCTACACGTTTAAA
ACGAGCTTCCGGGACACTTTGCCCGACGCTGTGTCTCTACCTCAAGCCTT
CAAAAACGCGGGCTACTTGACCTGTGGCTTCGGGAAGACCTTCCACGACG
ACGGGATTCCAAGCCCGCCGGACTACGACAATCCGTACAGTTGGTCCCCA
GAGTGCCCATACTACGCTCCTGAAGAAGATTTTTGTGGGGAAGGTCAGCA
TGGTTGGTGCACTCCCGACATGCCTGAAGGTAACTTTACGGACGGGCTGG
TTGTGGACGCGGCGATTGAGCGACTACGCGGGCACGTACATGCACAATCC
GTTGAAGGACGAGGTGATCGACCGTTTTTTTTCGCCGTGGGGATCCGGAA
GCCTCATTTAGATTGGGCAGTGCCCAAGGCCTACTTTGACGCGCAGGTCT
CCCTGAGAGATGTCCGCCTTCCCTCGGACTCGGTCCGAGTGGCCCCGCCA
GGCATGCCAGCTGTCGCTTACTACAACTGTAGCACGGAGCCGCCTTGGAA
GCTGGCCATGCCGGAGATTGTCCTATCGCCCCACGAGCCCTTACAAGACG
AGTTGGAACGAGAATTGCGACGGGCGTACTATGCGGCAGTGACATGGATG
GACGCGAATGTAGGAAAGCTTTTGGACGCCTTGACTGAGCTAGGCCTCGA
CGAGAACACGGCCATAGTTTTCCACTCTGACCACGGTTTTCATCTCTCCG
AGGAAGGAATGTGGTGCAAACAAAACACGCGAGAGATCGGCACGCGCGTA
CCTTTGCTCGTGTCAGCCCCCGGTCTGACAGTGCCATCGGAGGCGCGCCG
AGAAAAGGAACAGAGAGAGACAGCCGGCCTGTCAGAGGCAATCGTCCAGC
TTGTGGACATATACCCCACATTGCTGGACCTGGCTGGGCTCACACTACCT
GATCCCAACATGCGAGGAAGAAGTTTGATCCCTCTAATGCGGCGCTGGGG
CAGTGGAGGCAATGAAACCGAAAATGCGACCGGGTTCGGCGCCGCCTTCT
CCCAGTATCCCCGTTGTGCGAGCACCTCGCTGGCTCCCAGTGGACTGGCA
TCCCAGGGATATCGATGGAATCGGCAATGTGCCTGGCTTGAGAACGACAA
GATCGATGTGATGGGGTACAGCGTGAGAGTGGAGGGATGGAGATACACAG
AGTGGTACACGTGGGAGGCGCGACGAGCCCGGCCTAGATGGAATGCTGCA
GGTCTTGTAGCCGTGGAGCTGTATGCGATGGACATGAGCAGAGGAAAAGG
TGTGATGGAGGAGATGAAGATGGAAGATAAAGTGGCTCGGAATGTGGCAA
ACGACGTACGCTATCGTCAAGAGCAGGAGCATCTGAGCAAGTTGCTCTAT
GACCACTTTTCGTCCTTCCAACCCTTTGCTATGAGCGCCGACGCCGTGGA
TACCTGACCTGTTTACACCACAGACATGGTGCATAAGCTTGAGCGAAAGC
ATGTAACAAAAACTTGGAAGTCTTGCGGCGACATAGTTCTTAATGGCACA
TTCAATAAAAGTCGCTTATTGAGGGTAGCAAGGTTGCCCGTTCTTACACA
GCAGGATGTAAAATTGTACACAAAGCTGCAGGCAATTGAAAATTCACTAT
TTAATCCTGTGTC

Coding sequence (CDS) from alignment at CM002456.1:508068..510530-

>rna825 ID=rna825|Name=rna825|organism=Nannochloropsis gaditana|type=CDS|length=1827bp|location=Sequence derived from alignment at CM002456.1:508068..510530- (Nannochloropsis gaditana)
ATGACTTTGAACCGAGCACATTTCGTGCATAACGTTTGCATCAAGTTTTT
CACGGCGCTTCAACTCTTCACCTTTTTAAAGTTGACAATATATACTTTGA
CGCTCTTTGGTCATGGTTTCGGTATCGGAGTAGCCGCCGCCCCGGCCACG
ACGTCTTGCAATCCCACATCTCCTTGCGCGGAGAACGGTTCTCTCGCAGT
GAAGAACATACTGTACATAATCATAGACGATTTGACGGCCGATTTGTCAC
TTTTTGGTGGAAAAATAGATCAAGCTCCCATTCCTAATCTGCAACATCGA
CTTGCTCCTCGTGCCGTGAACTTTCTGCGTGCGTATGCACAGCAAAGCGT
GTGCGGGCCTTCGCGCAATTCATTTCTCTCAGGGCGGCATCCCGACGAGA
CACAGTCCTACACGTTTAAAACGAGCTTCCGGGACACTTTGCCCGACGCT
GTGTCTCTACCTCAAGCCTTCAAAAACGCGGGCTACTTGACCTGTGGCTT
CGGGAAGACCTTCCACGACGACGGGATTCCAAGCCCGCCGGACTACGACA
ATCCGTACAGTTGGTCCCCAGAGTGCCCATACTACGCTCCTGAAGAAGAT
TTTTGTGGGGAAGGTCAGCATGGTTGGTGCACTCCCGACATGCCTGAAGG
TAACTTTACGGACGGGCTGGTTGTGGACGCGGCGATTGAGCGACTACGCG
GGCACGTACATGCACAATCCGTTGAAGGACGAGGTGATCGACCGTTTTTT
TTCGCCGTGGGGATCCGGAAGCCTCATTTAGATTGGGCAGTGCCCAAGGC
CTACTTTGACGCGCAGGTCTCCCTGAGAGATGTCCGCCTTCCCTCGGACT
CGGTCCGAGTGGCCCCGCCAGGCATGCCAGCTGTCGCTTACTACAACTGT
AGCACGGAGCCGCCTTGGAAGCTGGCCATGCCGGAGATTGTCCTATCGCC
CCACGAGCCCTTACAAGACGAGTTGGAACGAGAATTGCGACGGGCGTACT
ATGCGGCAGTGACATGGATGGACGCGAATGTAGGAAAGCTTTTGGACGCC
TTGACTGAGCTAGGCCTCGACGAGAACACGGCCATAGTTTTCCACTCTGA
CCACGGTTTTCATCTCTCCGAGGAAGGAATGTGGTGCAAACAAAACACGC
GAGAGATCGGCACGCGCGTACCTTTGCTCGTGTCAGCCCCCGGTCTGACA
GTGCCATCGGAGGCGCGCCGAGAAAAGGAACAGAGAGAGACAGCCGGCCT
GTCAGAGGCAATCGTCCAGCTTGTGGACATATACCCCACATTGCTGGACC
TGGCTGGGCTCACACTACCTGATCCCAACATGCGAGGAAGAAGTTTGATC
CCTCTAATGCGGCGCTGGGGCAGTGGAGGCAATGAAACCGAAAATGCGAC
CGGGTTCGGCGCCGCCTTCTCCCAGTATCCCCGTTGTGCGAGCACCTCGC
TGGCTCCCAGTGGACTGGCATCCCAGGGATATCGATGGAATCGGCAATGT
GCCTGGCTTGAGAACGACAAGATCGATGTGATGGGGTACAGCGTGAGAGT
GGAGGGATGGAGATACACAGAGTGGTACACGTGGGAGGCGCGACGAGCCC
GGCCTAGATGGAATGCTGCAGGTCTTGTAGCCGTGGAGCTGTATGCGATG
GACATGAGCAGAGGAAAAGGTGTGATGGAGGAGATGAAGATGGAAGATAA
AGTGGCTCGGAATGTGGCAAACGACGTACGCTATCGTCAAGAGCAGGAGC
ATCTGAGCAAGTTGCTCTATGACCACTTTTCGTCCTTCCAACCCTTTGCT
ATGAGCGCCGACGCCGTGGATACCTGA

Synonyms

Publications