rna8242, rna8242 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8242
Unique Name	rna8242
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1769
Alignment location	KK037248.1:161015..162518 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g53.3481.mrna
Orig protein id	gnl\|cribi\|Naga_100011g53.3481
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:161015..162518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g53	gene7983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8242	rna8242-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22481.1	cds8218	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:161015..162518+
coding sequence from alignment at KK037248.1:161015..162518+

mRNA sequence

>rna8242 ID=rna8242|Name=rna8242|organism=Nannochloropsis gaditana|type=mRNA|length=1769bp
CACCATCGGACAGCTGGAGTGAAAGATTAAAAACACATCCCTTTTTCCTC
TTACGGTTTCCGATCAATCCACAATAAAACATGCGGCACAGGTCATAGTG
GTGGTGAAGCTTGACAACAAGATGGGGGACGATGAACTGTCAACGTCCTT
GAGTGAGATGTCTTTAACTGGGTCCCGGAGTCTCGGTGGAATAGGAGATG
ATCGTCCGGGGTCGGCGCTGAGCTCCTCGCCCGCAAGCCCAGGATTTGTG
GGAAAAGGGACGTTGCGACCTAAGCACAAGCAGCAGCAGTCGGGAGCATC
CCCAACCCGCGTGCGAAAGAGCTCCTCCCCCAAAAGTGGAAAAGGGGGCG
GAGGCAAAGCCAGTGGGGGCGTGAAAGAAGATAGGAATCGAGGAAGGGAT
GTGAGCAGCGGCACTACCACCTCCAGAAATACTCCTGGAGGCTCTTCTCG
GTGCGAATCTGAGCGCACGCAGGGGCATATCAGCGCCGGGGCGAAGCGTC
AGGGGCCGCAAAGCCACCGTGGTGCCCGGGCGGAGTCTGAGGATTGGGGG
CGACACCAGGCCCCCTCGAAAATGATTCACCTGTTTAGCCACCTTCCGCA
GTATTCGAAGCGCTCTACGCAAAGTAAATCCGACCTGCACCCGGCGATAG
AAACCTTGGGGTTGCTGTACGCGGACGGGTCGGTGCGAGGCTCCAACGCG
CGCACAGCAGCTATGCTGTTGGCGTTCAAAGAAGTGGTGCGAGAATACCA
GCTCCCGCCGGGCGAGGTTCTACGCCTGGACCTTGATAAAGCCTTAAAGC
CGCACATCCAATATCTCATCAATTGTCGGCCCCACTCTATCGCTATGGGC
AACGCTATCAAATGGCTGCGGGGCCGTATCCACAGCCTGGACCCCGAGGC
CGGGCCTGCGGAGGCAAAAGAGAGCATCGTGGAAGCCATTGATGCGTACG
TGGAAGAACGGATAACGTTCGCGGCAAAAACATTGGCCGAGGTGACTGCG
AATAAGATCTCGGACGGGGACGTGGTGCTGGTCTACGGTCGCTCCTATTC
CGTGGAGCTCACGCTGCTTCGCGCAAAGGCTCAAGGGAAGAAGTTCCGCG
TACTCGTGGTGGACTCACGACCGCTCCTTGAGGGCCGACGCCTTCTGGCA
TCATTGTCACGTGCGAATATTCCCAGCACCTACCTGAATTTAAACGCTGT
CTCATACGTCATGCGTGGAGTGTCAAAGGTTCTCCTGGGTGTTGCCGCCA
TGCTATCGAACGGCGCCGTCATATCCCGTGCGGGCACAGCAGTTGTCGCC
ATGCTTGCTCGACGCTTTAATATTCCCGCAATTTTTTGTTGCGAGACTTA
TAAGTTCTCAGACAAGGTACAACTTGACTCCATTTGTTGGAACGAAGTAG
GCGATCCAGCCGAGCTCCTCCGGCCTGCTGGCGGTCCTGGAGTTACTCGT
CAGATGGAACAGGCCCACTCTCTGCAAAAAGACAAGCCTGGAATCGCAGC
ATCGGAATTGACGGCGTCCCTGCCGCAACGACTGAAGCTTTTAAATATCC
GTTACGACTTGACACCCATGAAATATGTCTCCCTCGTCATCACAGAGGTT
GGAATGATTCCTCCAACGTCTGTGCCTGTTCTCTTGCGAGAGAGTAGCAA
GGATGACGTCAACGTCAATTTTGAGTTTTGAGAGAGCAGCAGAGAGCGTA
AACGTGTCGTCATTTTGCGAGCAAGGAAGCGAAAGCAATGTCACATACTG
GGCGGTCACGTGTTTAGGT

protein sequence of rna8242

>rna8242-protein ID=rna8242-protein|Name=rna8242|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MHDGGYSTTQGPSEEVDLLSLWTLETNLLTSLMYRNKNQHGRTGYWKRLE
EVRRRTEELDVPSLLHLLVEERQHLFMVEGSTQTRKEKPRRQLHQVPATR
SAALSTAILQCCSAMTSITAAAELLVQEIAQGYFLNLLILFLAILGRFRT
LLRHLCVQIVASRDASFLAEDSLEGWEGKDGEKSGERHQLFARKVMRILE
KEAHVTLSGVKRPRQNREESAGSDRDQEDDLGVALNLQSSVACSTSGAAG
IITRIISPRSGASKALVARSKSGAASRAMLASEYSSSSEEGEEENKELED
GKNCALTALRDGQDENEGLQTIVAHKMNQKEQECRAVSFVIDRIPDSHQP
DSSKKNLPAANKRKRLFKCKASYSSLAGSPISQKKSKQEAPHSSGASLIR
AIDDIFNAAGAKKGGSKYQSKTRIHQQTQSKKMK

mRNA from alignment at KK037248.1:161015..162518+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8242 ID=rna8242|Name=rna8242|organism=Nannochloropsis gaditana|type=mRNA|length=1504bp|location=Sequence derived from alignment at KK037248.1:161015..162518+ (Nannochloropsis gaditana)
GGCGACCCGTCACATACAGGTCAGGACAATACTCGCATCACTCATCAAAT
GCACTTGAAAAATCGCATGCTCCTCAAGGTGACGACGCGACCGGCATTCT
TGAGGGGAGAAGCTGAAAAAGACAATTGTTGCCATGCATGATGGTGGTTA
TAGCACGACCCAGGGGCCAAGTGAGGAGGTTGACTTGCTCTCGTTATGGA
CACTGGAGACAAACTTGTTGACGAGCCTCATGTACCGCAATAAGAACCAA
CACGGGCGAACGGGCTACTGGAAGAGGCTTGAGGTACGTCGCGTCGGTAT
TTCTTCAATGTGTCAAGTTATGCTTGGTCTCACTCACACGATCAACCAGG
AGGTGAGACGGCGGACGGAGGAGCTCGACGTGCCTTCTCTGCTGCACTTG
CTTGTGGAGGAGCGACAACACTTATTTATGGTTGAGGGCTCAACACAAAC
TCGAAAGGAAAAGCCAAGGAGGCAACTCCACCAAGTTCCAGCCACGAGGT
CCGCCGCGTTGTCCACGGCCATCCTGCAATGCTGCTCCGCGATGACCTCG
ATTACCGCAGCAGCAGAGTTGCTCGTGCAAGAAATCGCCCAGGGCTATTT
TTTAAACTTGTTAATATTGTTTTTGGCCATCTTGGGTCGTTTTCGCACAC
TTCTTCGACACTTGTGCGTCCAGATAGTTGCGTCACGTGATGCTTCTTTC
CTAGCGGAGGACTCCttggaaggatgggagggcaaggacggggagaaaaG
CGGGGAAAGGCATCAACTTTTCGCTAGAAAAGTGATGCGCATTCTGGAAA
AGGAAGCTCATGTTACTTTATCTGGGGTCAAACGGCCGAGGCAGAACCGG
GAGGAAAGTGCTGGAAGTGATCGTGACCAAGAGGATGATCTCGGCGTCGC
CTTAAATCTTCAGTCTTCTGTCGCTTGTTCGACTTCTGGAGCTGCGGGAA
TCATCACGAGAATAATATCACCTCGCTCAGGAGCTTCAAAAGCCTTGGTG
GCAAGGTCTAAGAGCGGTGCTGCTTCGCGGGCCATGTTGGCAAGTGAGTA
CAGCTCgtcgagcgaggagggcgaggaggagaacaaaGAGCTGGAAGATG
GAAAGAACTGTGCACTTACTGCCTTACGCGATGGACAAGACGAAAATGAA
GGGCTACAAACGATTGTTGCTCATAAAATGAAtcagaaggagcaggagtg
CAGGGCCGTCAGCTTTGTCATTGATCGGATACCAGACTCTCATCAACCAG
ACAGTTCAAAGAAAAACTTGCCCGCAGCAAACAAGAGAAAAAGACTTTTC
AAGTGCAAGGCAAGTTATTCGAGTCTAGCGGGCAGTCCGATTTCTCAAAA
GAAGAGCAAGCAAGAGGCCCCCCATTCTTCAGGTGCATCGCTAATTCGGG
CGATAGACGACATTTTCAACGCAGCTGGCGCGAAAAAGGGGGGATCAAAA
TATCAAAGCAAAACCAGGATTCATCAACAGACGCAAAGTAAAAAAATGAA
ATAG

Coding sequence (CDS) from alignment at KK037248.1:161015..162518+

>rna8242 ID=rna8242|Name=rna8242|organism=Nannochloropsis gaditana|type=CDS|length=2610bp|location=Sequence derived from alignment at KK037248.1:161015..162518+ (Nannochloropsis gaditana)
ATGCATGATGGTGGTTATAGCACGACCCAGGGGCCAAGTGAGGAGGTTGA
CTTGCTCTCGTTATGGACACTGGAGACAAACTTGTTGACGAGCCTCATGT
ACCGCAATAAGAACCAACACGGGCGAACGGGCTACTGGAAGAGGCTTGAG
GAGGTGAGACGGCGGACGGAGGAGCTCGACGTGCCTTCTCTGCTGCACTT
GCTTGTGGAGGAGCGACAACACTTATTTATGGTTGAGGGCTCAACACAAA
CTCGAAAGGAAAAGCCAAGGAGGCAACTCCACCAAGTTCCAGCCACGAGG
TCCGCCGCGTTGTCCACGGCCATCCTGCAATGCTGCTCCGCGATGACCTC
GATTACCGCAGCAGCAGAGTTGCTCGTGCAAGAAATCGCCCAGGGCTATT
TTTTAAACTTGTTAATATTGTTTTTGGCCATCTTGGGTCGTTTTCGCACA
CTTCTTCGACACTTGTGCGTCCAGATAGTTGCGTCACGTGATGCTTCTTT
CCTAGCGGAGGACTCCttggaaggatgggagggcaaggacggggagaaaa
GCGGGGAAAGGCATCAACTTTTCGCTAGAAAAGTGATGCGCATTCTGGAA
AAGGAAGCTCATGTTACTTTATCTGGGGTCAAACGGCCGAGGCAGAACCG
GGAGGAAAGTGCTGGAAGTGATCGTGACCAAGAGGATGATCTCGGCGTCG
CCTTAAATCTTCAGTCTTCTGTCGCTTGTTCGACTTCTGGAGCTGCGGGA
ATCATCACGAGAATAATATCACCTCGCTCAGGAGCTTCAAAAGCCTTGGT
GGCAAGGTCTAAGAGCGGTGCTGCTTCGCGGGCCATGTTGGCAAGTGAGT
ACAGCTCgtcgagcgaggagggcgaggaggagaacaaaGAGCTGGAAGAT
GGAAAGAACTGTGCACTTACTGCCTTACGCGATGGACAAGACGAAAATGA
AGGGCTACAAACGATTGTTGCTCATAAAATGAAtcagaaggagcaggagt
gCAGGGCCGTCAGCTTTGTCATTGATCGGATACCAGACTCTCATCAACCA
GACAGTTCAAAGAAAAACTTGCCCGCAGCAAACAAGAGAAAAAGACTTTT
CAAGTGCAAGGCAAGTTATTCGAGTCTAGCGGGCAGTCCGATTTCTCAAA
AGAAGAGCAAGCAAGAGGCCCCCCATTCTTCAGGTGCATCGCTAATTCGG
GCGATAGACGACATTTTCAACGCAGCTGGCGCGAAAAAGGGGGGATCAAA
ATATCAAAGCAAAACCAGGATTCATCAACAGACGCAAAGTAAAAAAATGA
AATAGATGCATGATGGTGGTTATAGCACGACCCAGGGGCCAAGTGAGGAG
GTTGACTTGCTCTCGTTATGGACACTGGAGACAAACTTGTTGACGAGCCT
CATGTACCGCAATAAGAACCAACACGGGCGAACGGGCTACTGGAAGAGGC
TTGAGGAGGTGAGACGGCGGACGGAGGAGCTCGACGTGCCTTCTCTGCTG
CACTTGCTTGTGGAGGAGCGACAACACTTATTTATGGTTGAGGGCTCAAC
ACAAACTCGAAAGGAAAAGCCAAGGAGGCAACTCCACCAAGTTCCAGCCA
CGAGGTCCGCCGCGTTGTCCACGGCCATCCTGCAATGCTGCTCCGCGATG
ACCTCGATTACCGCAGCAGCAGAGTTGCTCGTGCAAGAAATCGCCCAGGG
CTATTTTTTAAACTTGTTAATATTGTTTTTGGCCATCTTGGGTCGTTTTC
GCACACTTCTTCGACACTTGTGCGTCCAGATAGTTGCGTCACGTGATGCT
TCTTTCCTAGCGGAGGACTCCttggaaggatgggagggcaaggacgggga
gaaaaGCGGGGAAAGGCATCAACTTTTCGCTAGAAAAGTGATGCGCATTC
TGGAAAAGGAAGCTCATGTTACTTTATCTGGGGTCAAACGGCCGAGGCAG
AACCGGGAGGAAAGTGCTGGAAGTGATCGTGACCAAGAGGATGATCTCGG
CGTCGCCTTAAATCTTCAGTCTTCTGTCGCTTGTTCGACTTCTGGAGCTG
CGGGAATCATCACGAGAATAATATCACCTCGCTCAGGAGCTTCAAAAGCC
TTGGTGGCAAGGTCTAAGAGCGGTGCTGCTTCGCGGGCCATGTTGGCAAG
TGAGTACAGCTCgtcgagcgaggagggcgaggaggagaacaaaGAGCTGG
AAGATGGAAAGAACTGTGCACTTACTGCCTTACGCGATGGACAAGACGAA
AATGAAGGGCTACAAACGATTGTTGCTCATAAAATGAAtcagaaggagca
ggagtgCAGGGCCGTCAGCTTTGTCATTGATCGGATACCAGACTCTCATC
AACCAGACAGTTCAAAGAAAAACTTGCCCGCAGCAAACAAGAGAAAAAGA
CTTTTCAAGTGCAAGGCAAGTTATTCGAGTCTAGCGGGCAGTCCGATTTC
TCAAAAGAAGAGCAAGCAAGAGGCCCCCCATTCTTCAGGTGCATCGCTAA
TTCGGGCGATAGACGACATTTTCAACGCAGCTGGCGCGAAAAAGGGGGGA
TCAAAATATCAAAGCAAAACCAGGATTCATCAACAGACGCAAAGTAAAAA
AATGAAATAG

Synonyms

Publications