rna8238, rna8238 (mRNA) Nannochloropsis gaditana

Overview
Namerna8238
Unique Namerna8238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1353
Alignment locationKK037248.1:152188..153578 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g49.3480.mrna
Orig protein idgnl|cribi|Naga_100011g49.3480
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:152188..153578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g49gene7979Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8238rna8238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22480.1cds8214Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8238 ID=rna8238|Name=rna8238|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp
TATCATCATATTTAAAGTATGCTGTTGAATTATCTTGATTTCGTTGGAAA
TTTCACGAGTCCAGGAAAGAGTTGCACTATCCGAGAGAGAGCCACGAGGT
GTCGGGTGATGGAAAAAAAAACACATGTACGCATGATTCACACGATATAC
CCAGTATTTCAGGCGTCGCAAAACTCATTTGCCCTATTAAGATAAAGCCC
GATAAAAGTCCTACTTACACAGGGGAATGTGTCAATATTCAGCCAAAGCA
TGTGTTAATACTGGAACGGCAACTAAAAAAAAACATTTCGGTTCCTACCA
ACATGTGTTTCGACGTCAACAGAATTTAAGCCTTTAAGCCCAAGTTTGTC
AACATATTTCTATCCTTACGATAACAGCAATCAGAACTGAGCATATTAGG
CACCTTTATCCTGCAACTTAGCTGAAATGGGAGGTGGCCAATCCATTGCA
GCTGCAGCTCCAGAGCCACTTGAGTTTACAATGTCTTCAAGTGCTTCGTT
ACCTAAAGCATATCGTCACTTGTGTCATTTTCCTGTTCTGGCAAAGCAAG
CTCGTGGCCCAATCCGTCACCATCCAAACGAACGAATCACACACTTCCTC
AAAGAACAGGATGCGACCGCTCTTCTGATTGCGGACTACTTATCCGTGCG
AGAACGTCTCGTCTTCCTGCAGACTCACAAGGTGGGCCTTCCGCCGAAGC
ATCTGAAACATTTATTATTCAGCGGACCTTCGCGGGAACTGAAATTTCTG
TATAGTCCCGCGACTACCGCTATGGTAGAGGGGAAGCACCCAGTCTCGAG
TTCTTTCAATAACAACTTAAAGGAGACCAAGACTGAAATATACGCCACGA
ATAATTTTGGCAACACATTCCAGCTCGAGATTCGGTATCGAGGGAGTTTT
TTGTCCAGAGCGGTGCCCTTGTCATTGGTGTCTACCGCGCTTCATCGCGT
TATTCGGAGTTGGATGGACGACACATTACGCAAGCGTGGATTTTCAACTC
TTCTGACTATGGTCAACAGGCTCTTATCTGTATTCCGACCAACAGAAGAA
GTCTGGTACACCATCATCAACAGCTTTGGGAAAGACGGGACTACCTTGCT
CACATACGCCTGCAGTAGCCGGGATACACCGTTGTCTGTTATAGAAAAAC
TACTACAAATACCTTGTTTCGACCTGGCACTCCCTGATCACAAGTTTGGC
CTCAATGCCATCCAGCTTGCACACATGCACGATCGTCAGGACGTACTCGC
ACATTTCGCCTCGCTGGTAGGGCTTCAAAGATGAACTTAATGCAAGAGCT
TGCAATCATTCGAATGATTTTTGTTTCTTATGTATAGAAGAGAAACGAGA
GCG
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protein sequence of rna8238

>rna8238-protein ID=rna8238-protein|Name=rna8238|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MHIAVHHEKERRSVRIILYNGWLRDWTYPRLWMKSLAIHLSHTQYCVLGE
GGHGLVDIDVEIVGNTVPVQTADSGRYIKHLSDMVGPAGPDENTFFIGQS
IGCLVILRYLACLPPGFKVCIYACGKKYCFIFPSGSYEYQLANHGT
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mRNA from alignment at KK037248.1:152188..153578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8238 ID=rna8238|Name=rna8238|organism=Nannochloropsis gaditana|type=mRNA|length=1391bp|location=Sequence derived from alignment at KK037248.1:152188..153578+ (Nannochloropsis gaditana)
GCTACGACTACTGAGTCGGCAATCTCAAAGGGGTTTGTATACCCATGACA
GGGTCGACGACATCGATTCGATCCAAGCAAAGCGTGGCAGAGGGTAGGAA
TATTTGACTATAAAACCTGCTCTTCCATCCCGGTTGCTTTCGATATGCAC
ATTGCAGTTCATcacgagaaagagaggcggTCAGTGCGGATCATTCTCTA
CAATGGATGGTTGCGCGATTGGACCTACCCACGTTTATGGATGAAGTCGC
TGGCAATCCATTTGAGCCATACGCAATATTGTGTATTGGGCGAAGGTGGG
CACGGTCTTGTAGACATTGACGTGGAAATTGTAGGCAATACTGTTCCCGT
GCAGACCGCTGACTCGGGAAGGTACATCAAGCACTTGTCTGATATGGTGG
GTCCCGCCGGGCCGGACGAGAACACTTTTTTCATTGGACAAAGCATTGGC
TGTCTGGTAATTTTGCGTTACCTGGCGTGTTTGCCGCCGGGCTTCAAGGT
ATGTATCTATGCGTGTGGAAAAAAATATTGTTTCATTTTCCCAAGCGGAT
CCTATGAGTATCAACTAGCAAATCATGGCACTTAACGCCATGTGAAAAGA
AACGATGAACAACGTCGTTTTTTTCCTCGCCACTGATGATTTAGATCGGC
GGTTGCCTTTTTGTGGGTTGCTGGTTGTCTCTGGATCACACAACACAACG
AAGACGATCTCCCGCTATCGACGACCTCATCAGGACCGAGTGGGATACAT
TcaaggaaggatggatgaATCACAATGATGTCGACTTTGCGGTATGACAT
CAAACGGAGAGGGTAGATGGTTAAACATTGTCTTTTTGTCCCTGCTACTT
GTTGAGTATATTGAGATTTCAAGTGATAAAGCACATTCATCGACATCTTT
ACTACTCTGATTGCTGATCGTAAAACAGGCCGTCCGGCGCGTCTGCAAAC
CTGGCAAGCTGCTTTGTCTCATAGCGGACAATGATCCGTATCGGGGACTC
GATGACAACGGCGTGAGCAACAAGCGAGACTTTGAAGAGACTGTGGGCGC
GGAAGTCATTCTTCGTCATGGGAAAGGCCATTTTAACACTTCTAAattgg
atgaggaggacacgaGATTGATCGAAGAAAAATTACTCAACTTTATGCGC
TCTGAAGCCGGAGACGTTCGGATACCACATCCAAGAACTTCTAGATTGTG
AATTCAGATAGGCAAAAATAAGACACACTACCTTCGACTTCTTATAGCat
gtttcttttcttctttatTTTTTACAATCTAAAGCCAAAAGTCCTCAATC
CGAAAGCTTTTGGGCGTATCACTTGTCACAGCAGGCTATAATCACCGCAA
GTAATAAAAGGTATTGCGGACTCAACTTTCAGGTGCTCTGC
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Coding sequence (CDS) from alignment at KK037248.1:152188..153578+

>rna8238 ID=rna8238|Name=rna8238|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at KK037248.1:152188..153578+ (Nannochloropsis gaditana)
ATGCACATTGCAGTTCATcacgagaaagagaggcggTCAGTGCGGATCAT
TCTCTACAATGGATGGTTGCGCGATTGGACCTACCCACGTTTATGGATGA
AGTCGCTGGCAATCCATTTGAGCCATACGCAATATTGTGTATTGGGCGAA
GGTGGGCACGGTCTTGTAGACATTGACGTGGAAATTGTAGGCAATACTGT
TCCCGTGCAGACCGCTGACTCGGGAAGGTACATCAAGCACTTGTCTGATA
TGGTGGGTCCCGCCGGGCCGGACGAGAACACTTTTTTCATTGGACAAAGC
ATTGGCTGTCTGGTAATTTTGCGTTACCTGGCGTGTTTGCCGCCGGGCTT
CAAGGTATGTATCTATGCGTGTGGAAAAAAATATTGTTTCATTTTCCCAA
GCGGATCCTATGAGTATCAACTAGCAAATCATGGCACTTAA
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Synonyms
Publications