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Properties
| Property Name | Value |
|---|
| Product | vacuolar protein-sorting-associated protein 36 |
| Orig transcript id | gnl|cribi|Naga_100011g27.3448.mrna |
| Orig protein id | gnl|cribi|Naga_100011g27.3448 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:101455..104129 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8214 ID=rna8214|Name=rna8214|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp
ATTTCCCCCGGTTTATCTTCCAAGATGTGCGCTCAATGCCCTCATCTTTT
CTACGTTTGCTCTTATGTCGGCGTCCAACCCGCCAAATCATTCCGCGGTC
TCATCCTGATCGCTCAACTCAGTTTTCCAGGGAGTCGGGCATTACGGCAA
ACATGCTTATCAGCTCCTTTATGGCTGCTCCCAAAACATTGCTCCGTCCC
TCGACGATCCTAAGACGTCACGCTAGCGGGAATAGCTCGAAGGCAGCATA
TCGCATGGTCCTAGTCAGGCACGGGGAGAGTGAGTGGAACAAAGAAAATC
GCTTCACTGGTTGGTACGATGTGCAACTATCAGAAAAAGGCATTGCTGAG
GCCAAGGAGGGTGGACGGCTGCTGAAAGAAGCTGGTTTTACTTTCGACAA
GGCATACACGTCCGTGCTGCGCCGGGCTATCAAGACCTGCTGGCTCGTCC
TGGAGGAAATGGATCTCATGTGGATCCCCGTCGAAAAAGCTTGGCAGCTG
AACGAGCGGCACTACGGGGCCCTGCAGGGGCTGGACAAGAACGAGACTGT
CGCCAAGCACGGCAAGGATCAGGTGCACATTTGGCGTCGGTCCTACGACA
TCCCCCCTCCGCCGCTTGAAAAAAACAATCCCCATTACCCTGGTAACGAC
GTCCGATATGGCCAACTACTGCAGAGGGAGACGCCTGTCACCGAGAGCCT
GAAGACCACGTTGGATCGCGTCGTGCCGTTCTGGGAGAAGGTCATCAAGC
CGGATGTAACCGCTGGAAAAGGCCTCCTTATTGCCGCACACGGTAATTCC
TTGCGAGCATTGGTCAAGAAGCTGGACAATATCCCTGACTCGGACATTAC
GGAGCTGAACATTCCCACCGGCACCCCCCTTGTGTACGAGCTCGACTCTG
AGTTTAAGCCCATCAAGCACAAGGAGAGCATAGGGCCCCTGTCAGGGCGC
TACCTTGGCAACCAGGAGGCTATCAAGGCCCGCATCTTGGGCGTCAAGAA
CCAGACCAAGTGAAAGCGCCGGAGTGTTGACAGGGCTGGATGCGGGGCCC
TGTAGTGGACCGGCCGGGGGCCTCTGGCACGTGTCTCTGCATGGCGCGCA
TTTGGGCTTCCTCGGTGGATGTTATGGCTGAGGATTTATAAAATCCTATC
AGTCTGCTATCTATGTGCTCCTAAAATATCCGAAGAAGTTCCTGTCGCGC
GTTGGCTTCCGTTTCCGTCAGGGGACACCTCGGAAGGACAATGGAAGAAA
ATTTGTATCGAGGCTAAGGCATTGATGGCTCAGAAAGTGTGCGCTACTTT
TGCTTCAAACCCTTCTTGAGACCAATCTGTTGTGAAATACCGCAATCCCC
TCTTTAAGGAAGATGTGCCGTGCTGAACGGCCTCGCCTGTGAT back to topprotein sequence of rna8214 >rna8214-protein ID=rna8214-protein|Name=rna8214|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MAALQTTNPFELFWQDLPLPPGSTRPPLSEFEIECLMRDRVSLVDGRSNR
IVHRDGIVLLTSHRIIWHCQSQSRALHGHLSRVAEARTSRNIFKPSTRVH
LYLQGKVQDLDSRPATKIEFAHGGRDEFLKQVRSLLMMRDWEKPPPVKLR
LSPCAIEADGSTPASMPCSSPASPVQTVEPVFTTRLAGVGGILRQQETAR
AAQDRLATEAFADLEALMSKAREVVGVIERYATVLASKDKGEGEKGGSEA
EGGTGREDAELQGLLLNMGISNPVTRISAGSLYHQELARQLARFLTGGST
SAGALGRRSLLSERGGMMTLHDVFCLFNRARGTALISPEDLLDACEALEP
LQLGMRLRRFPSGVSVVEAMDFSEERVGARLRALAEAEADGSLTALDVAT
HLRVSIALAQEFLGTAEAQGLLCRDQSVQGTLFWPNRFPAWVAQAGEGND
RAA back to topmRNA from alignment at KK037248.1:101455..104129+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8214 ID=rna8214|Name=rna8214|organism=Nannochloropsis gaditana|type=mRNA|length=2675bp|location=Sequence derived from alignment at KK037248.1:101455..104129+ (Nannochloropsis gaditana)
GCACTGGCGATATGCCTCCCTATATGCTTGCACTTACCGCACTCGAACAA
TATCAACAGCGCTTCCGGTAAAAGCGGGCCTCCGCATTTACCTCTGTATA
TATTAGCGGCCCATGGCTGCACTTCAAACGACGAACCCGTTTGAGCTCTT
CTGGCAAGACTTGCCTTTACCTCCCGGAAGCACGCGGCCGCCGCTCTCAG
AGTTTGAAATCGAGTGCCTGATGCGAGACAGAGTGTCCCTGGTTGACGGA
CGTAGCAATCGAATCGTGCATCGCGATGGGATTGTACTCCTGACCTCGCA
TCGCATCATTTGGCATTGCCAAAGTCAGTCTCGCGCCTTGCACGGTCACC
TCTCCCGGGTCGCCGAGGCGCGTACCTCTCGCAACATATTCAAACCCTCC
ACGAGGGTGCATCTATATCTGCAAGGAAAAGTCCAGGACCTAGATAGTCG
GCCAGCGACCAAGATTGAATTTGCACACGGCGGCCGGGACGAGTTTCTAA
AACAAGTGCGTTCGCTGTTAATGATGCGGGATTGGGAGAAGCCCCCCCCG
GTGAAGCTTAGGCTGAGTCCGTGTGCCATCGAAGCTGACGGCAGCACTCC
AGCCAGCATGCCAtgttcctcccccgcctcccctgtccAGACGGTCGAGC
CCGTCTTCACCACGCGGCTGgccggggtgggaggaattCTGCGCCAGCAG
GAGACCGCGCGTGCCGCACAAGATCGACTCGCCACCGAAGCCTTCGCAGA
CCTGGAGGCGCTCATGAGCAAAGCGCGCGAGGTGGTAGGAGTGATTGAGC
GGTATGCTACGGTGCTGGCATCCAaagacaagggggagggcgagaagggc
ggctcggaggcggaaggcgggacagggagggaggacgcggagctGCAGGG
GCTGCTCCTGAACATGGGCATATCCAACCCGGTTACGCGGATCTCCGCCG
GCTCTCTCTACCATCAGGAACTGGCCCGACAGCTAGCCAGGTTCTTGACC
GGGGGAAGCACCTCCGCCGGCGCgcttggaaggaggagcctgCTGTCTGA
GCGCGGGGGCATGATGACCCTCCACGATGTCTTCTGTCTCTTCAACCGAG
CCCGTGGCACCGCCCTGATCTCTCCAGAGGACCTATTGGACGCCTGCGAG
GCTTTGGAGCCGCTGCAGCTGGGCATGCGGCTGCGGCGATTCCCAAGCGG
CGTGAGCGTAGTAGAGGCGATGGACTtcagcgaggagagggtgggcgCGC
GGCTCCGGGCGCTAGCGGAGGCCGAAGCAGATGGCTCCCTGACGGCCCTA
GACGTGGCTACCCACCTTCGCGTGTCCATTGCACTCGCGCAGGAATTCTT
GGGGACGGCGGAAGCCCAGGGCCTGCTCTGTCGAGACCAGAGCGTCCAAG
GCACCCTCTTCTGGCCCAACCGATTCCCCGCGTGGGTGGcgcaggcgggc
gagggaaacGACAGGGCTGCCTAGGTCGCTCAGGGAGAAGGGTTCAAAGC
AATGGCTAgcaaaggcggagggcgccgaggccgACTTCGATGACGGCGac
gctcttctttctttcacaCACCAGCGATACCTCTAATCTACGGCTGCTTG
CCTACTCTGTCCTCCACTGACGCCgatgccgccgcctcctcctcctcttt
ccgccGTCTGGCAGCGTCCAAGTCATGGagcatctccttcttccgccccc
cGTCCGTTTCAAACCCCCATTCCCggatcctctccatcgcccgctTCCCG
CGGCCCCGCGGTTGCaggccctgcccctcctcatACAGCGGCCGTCGcca
ctcttcctccacaaaACCCCTCCCCGGGGCTGCCTCTGAGCCCGCCACCT
CGTAGCCCCCCAAGAACCAGGAGTAGTCCACGCGCGGCAAAGAGCGGGGC
CTCTCGCCCGTCAGCTTGAGCCGGCGCCTGTCCCTGTCCACCTCCATGGC
CCAGACCCGCAGGCGCATGCCAGGGAAGAATACGTCCTGTGTGAGGGCCC
CCTCGCTGCGCCTCGGATAGTAGATCACGTGCAAGAAGCCCTGCACCTCC
GCGCCCACGTCCACGAATGCCCCGTAGTTTGAGACCTTGGTCACCTCGCC
CCACagctcgtcgtcctcctccacctcctccaggcccgtgcgggcctcct
gctcctccgccgtctccacctcggccGGCACCAGACTCCCCGTGACGATG
CCCTCGGCGGGACTCAGGTACTTGACGAAGAAGCTGACCGCGTCCCCGGG
CCTCACGTAGTCGCGCGCGTCCAGCACGAAATCCCGATCGCTCAAGTCAC
GCAGGCGCACAAAGCCATCCTTCGTCGCCCCGAAGTCCACGTAGGCCCCG
TGCTCCTTCACCGTTATCACCACCCCCTCGTGCCGGGAGCCTAACTCCAG
CTCTCCCAGCGGGATCTGCCTCTCGCGCTTCGGCCTCTTCACCCATTTGA
AGCCGCTCTCCTGTCGCTCTTTTATCTGCATGAGCTTGAATGCCTTgcgc
atctcctccaggtATTCGTCTCGCTGGTCTCGGAATCTAGCCTTGTTGGC
CCGGGCTTGCTTCTTGTTTTTGCCGACCTCctgagggaaggcgggcataG
AGCGCGTAGAAAGTTGAAAGCAATGTTCACTTGTAAGATAAATTAAAGTC
ATACACACAAAGCGTACATTAAAGA back to topCoding sequence (CDS) from alignment at KK037248.1:101455..104129+ >rna8214 ID=rna8214|Name=rna8214|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at KK037248.1:101455..104129+ (Nannochloropsis gaditana)
ATGGCTGCACTTCAAACGACGAACCCGTTTGAGCTCTTCTGGCAAGACTT
GCCTTTACCTCCCGGAAGCACGCGGCCGCCGCTCTCAGAGTTTGAAATCG
AGTGCCTGATGCGAGACAGAGTGTCCCTGGTTGACGGACGTAGCAATCGA
ATCGTGCATCGCGATGGGATTGTACTCCTGACCTCGCATCGCATCATTTG
GCATTGCCAAAGTCAGTCTCGCGCCTTGCACGGTCACCTCTCCCGGGTCG
CCGAGGCGCGTACCTCTCGCAACATATTCAAACCCTCCACGAGGGTGCAT
CTATATCTGCAAGGAAAAGTCCAGGACCTAGATAGTCGGCCAGCGACCAA
GATTGAATTTGCACACGGCGGCCGGGACGAGTTTCTAAAACAAGTGCGTT
CGCTGTTAATGATGCGGGATTGGGAGAAGCCCCCCCCGGTGAAGCTTAGG
CTGAGTCCGTGTGCCATCGAAGCTGACGGCAGCACTCCAGCCAGCATGCC
AtgttcctcccccgcctcccctgtccAGACGGTCGAGCCCGTCTTCACCA
CGCGGCTGgccggggtgggaggaattCTGCGCCAGCAGGAGACCGCGCGT
GCCGCACAAGATCGACTCGCCACCGAAGCCTTCGCAGACCTGGAGGCGCT
CATGAGCAAAGCGCGCGAGGTGGTAGGAGTGATTGAGCGGTATGCTACGG
TGCTGGCATCCAaagacaagggggagggcgagaagggcggctcggaggcg
gaaggcgggacagggagggaggacgcggagctGCAGGGGCTGCTCCTGAA
CATGGGCATATCCAACCCGGTTACGCGGATCTCCGCCGGCTCTCTCTACC
ATCAGGAACTGGCCCGACAGCTAGCCAGGTTCTTGACCGGGGGAAGCACC
TCCGCCGGCGCgcttggaaggaggagcctgCTGTCTGAGCGCGGGGGCAT
GATGACCCTCCACGATGTCTTCTGTCTCTTCAACCGAGCCCGTGGCACCG
CCCTGATCTCTCCAGAGGACCTATTGGACGCCTGCGAGGCTTTGGAGCCG
CTGCAGCTGGGCATGCGGCTGCGGCGATTCCCAAGCGGCGTGAGCGTAGT
AGAGGCGATGGACTtcagcgaggagagggtgggcgCGCGGCTCCGGGCGC
TAGCGGAGGCCGAAGCAGATGGCTCCCTGACGGCCCTAGACGTGGCTACC
CACCTTCGCGTGTCCATTGCACTCGCGCAGGAATTCTTGGGGACGGCGGA
AGCCCAGGGCCTGCTCTGTCGAGACCAGAGCGTCCAAGGCACCCTCTTCT
GGCCCAACCGATTCCCCGCGTGGGTGGcgcaggcgggcgagggaaacGAC
AGGGCTGCCTAG back to top
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