rna8213, rna8213 (mRNA) Nannochloropsis gaditana

Overview
Namerna8213
Unique Namerna8213
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1828
Alignment locationKK037248.1:99861..101361 -

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Properties
Property NameValue
Productphosphoglycerate mutase
Orig transcript idgnl|cribi|Naga_100011g26.3431.mrna
Orig protein idgnl|cribi|Naga_100011g26.3431
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:99861..101361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g26gene7956Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8213rna8213-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22431.1cds8189Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8213 ID=rna8213|Name=rna8213|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp
CGTGCGAGAGATTGGTCGGTGCAGAGTCAAGACCCTTTGCCTATGATGAA
ACATTTGATATATGCATTCCAGATGCTTCTTTAAAATGGCAGTCGTGGGT
AGGATCTCCTTCTGGACGTGATACAAAGCAAAACCCTCCTTCTCACAAGC
AACCTCCTCTCACGCTCGTAAAGCAGTTTTCATAGCCAACAAGGCCCTCT
TGTGGCTATGAAGCAATCACATCATTTTGGACTGATTCTTTTGCTGTACC
TGGTATTTGAAGCGACTGCCGATTTCTCATCTGTTGATGCAGGGGGTACA
ACTCTGATACGCATTCCCCTCGTCAAAGCGAATGTGCCTCCACGTGCAGA
CCCCCGCCGGCAACGGTCATTAGCAGAAGAAATAGACAGCAAGGGAGACA
TTGTATTGCATGATATTCATCAAGACGCAGCCTACATCGGAAGCATCGGC
ATCGGAACCCCTCCCCGCGAATTCACTGTGATTTTCGACACGGGCAGCAG
TGATCTGTGGATTCCCTCGGCACTTTGCAAAGTATGTGGCCACCGCAACA
AATACAATTCGGATGCTTCATCTTCCTTCGAGCAAGACGGGCGTAGCTTC
CAAATCACGTATATCGGAGGCCCCGTGACGGGATACCTTGCCGAAGACAC
GGTGCTATTTGCCGGGTATGCTGTGAAAAACCAGTCATTCGCCCAGATTA
CAAACCCTCTGGGTTTGGGGGCCAGCTATTCAGGTGGAGGATACGATGGA
GTGTTTGGACTTGGCTTCGATGAGCTGTCGGTGACGAAATCCACGACCCC
TTTCCACAATTTGATCGAGCAGCAAGGCGAAGTACTCCCGCAACCGATTT
TCGCTTTCTTTCTGGCCAACGGAGATACGGGGCCAAGTGAGCTGACGGTG
GGCGGCACAGATCCCAGCCATTACGAGGGAGACCTGCATTGGATGCCCCT
CCACGATCCCCCGGGGTACTGGGCAGTGGGATTGGACAGTGTCTACCTGG
GCCCTCGAAAGCTGCAGAGCCAGGCTGGCGCCGTGGTCCTGGACTCGGGG
ACGTCCATTATGGTGGGGCCGAAAACTGACGTGGACGCTATATTCGAGGG
GCTGGGGGCCACGCTTGTGGAGAATCTTTTCACTGTGAATTGCAGTCTAA
AGGCGGCGATGCCGGACCTGGAGTTCATCCTGGACGGTCAGCCGTACGCC
CTGAGCGCCGACGACTACCTGGTGCAGGACCGGGACATCTGCCTCGTGGG
GCTGCAGGGAGACGATCATGCCCAGGCTCAGTGGATTCTCGGCGACATGT
TCTTGCGGAAGTTCTACTCGGCGTACGACTACCAGAACAGACGCGCCGGA
TTGGCCTTGGCCAAGACGGGGAGATGAAAGCACCAGTTGATGTACAGGTC
AGAGCGAGCCATGGGGAAGGAAAAAAAGGAAATAAAGTCTAGAATTGCAA
GCCATTCAGTTATGTGCGGATGGCACATCGAGTATAGAATCACAGGCGAG
GCCGTTCAGCACGGCACATCTTCCTTAAAGAGGGGATTGCGGTATTTCAC
AACAGATTGGTCTCAAGAAGGGTTTGAAGCAAAAGTAGCGCACACTTTCT
GAGCCATCAATGCCTTAGCCTCGATACAAATTTTCTTCCATTGTCCTTCC
GAGGTGTCCCCTGACGGAAACGGAAGCCAACGCGCGACAGGAACTTCTTC
GGATATTTTAGGAGCACATAGATAGCAGACTGATAGGATTTTATAAATCC
TCAGCCATAACATCCACCGAGGAAGCCCAAATGCGCGCCATGCAGAGACA
CGTGCCAGAGGCCCCCGGCCGGTCCACT
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protein sequence of rna8213

>rna8213-protein ID=rna8213-protein|Name=rna8213|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MPSSFLRLLLCRRPTRQIIPRSHPDRSTQFSRESGITANMLISSFMAAPK
TLLRPSTILRRHASGNSSKAAYRMVLVRHGESEWNKENRFTGWYDVQLSE
KGIAEAKEGGRLLKEAGFTFDKAYTSVLRRAIKTCWLVLEEMDLMWIPVE
KAWQLNERHYGALQGLDKNETVAKHGKDQVHIWRRSYDIPPPPLEKNNPH
YPGNDVRYGQLLQRETPVTESLKTTLDRVVPFWEKVIKPDVTAGKGLLIA
AHGNSLRALVKKLDNIPDSDITELNIPTGTPLVYELDSEFKPIKHKESIG
PLSGRYLGNQEAIKARILGVKNQTK
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mRNA from alignment at KK037248.1:99861..101361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8213 ID=rna8213|Name=rna8213|organism=Nannochloropsis gaditana|type=mRNA|length=1501bp|location=Sequence derived from alignment at KK037248.1:99861..101361- (Nannochloropsis gaditana)
ATTTCCCCCGGTTTATCTTCCAAGATGTGCGCTCAATGCCCTCATCTTTT
CTACGTTTGCTCTTATGTCGGCGTCCAACCCGCCAAATCATTCCGCGGTC
TCATCCTGATCGCTCAACTCAGTTTTCCAGGGAGTCGGGCATTACGGCAA
ACATGCTTATCAGCTCCTTTATGGCTGCTCCCAAAACATTGCTCCGTCCC
TCGACGATCCTAAGACGTCACGCTAGCGGGAATAGCTCGAAGGCAGCATA
TCGCATGGTCCTAGTCAGGTTCGTTTAATGTAGCCAGTGCACTGCTGATC
AGTGGGCTAGCGTTGTCAAGACTCGTAGAACTGCGACGAGATTGGGCAAT
AATCAATGAGGCATGCACCGCAACAGGCACGGGGAGAGTGAGTGGAACAA
AGAAAATCGCTTCACTGGTTGGTACGATGTGCAACTATCAGAAAAAGGCA
TTGCTGAGGCCAAGGAGGGTGGACGGCTGCTGAAAGAAGCTGGTTTTACT
TTCGACAAGGCATACACGTCCGTGCTGCGCCGGGCTATCAAGACCTGCTG
GCTCGTCCTGGAGGAAATGGATCTCATGTGGATCCCCGTCGAAAAAGCTT
GGCAGCTGAACGAGCGGCACTACGGGGCCCTGCAGGGGCTGGACAAGAAC
GAGACTGTCGCCAAGCACGGCAAGGATCAGGTGCACATTTGGCGTCGGTC
CTACGACATCCCCCCTCCGCCGCTTGAAAAAAACAATCCCCATTACCCTG
GTAACGACGTCCGATATGGCCAACTACTGCAGAGGGAGACGCCTGTCACC
GAGAGCCTGAAGACCACGTTGGATCGCGTCGTGCCGTTCTGGGAGAAGGT
CATCAAGCCGGATGTAACCGCTGGAAAAGGCCTCCTTATTGCCGCACACG
GTAATTCCTTGCGAGCATTGGTCAAGAAGCTGGACAATATCCCTGACTCG
GACATTACGGAGCTGAACATTCCCACCGGCACCCCCCTTGTGTACGAGCT
CGACTCTGAGTTTAAGCCCATCAAGCACAAGGAGAGCATAGGGCCCCTGT
CAGGGCGCTACCTTGGCAACCAGGAGGCTATCAAGGCCCGCATCTTGGGC
GTCAAGAACCAGACCAAGTGAAAGCGCCGGAGTGTTGACAGGGCTGGATG
CGGGGCCCTGTAGTGGACCGGCCGGGGGCCTCTGGCACGTGTCTCTGCAT
GGCGCGCATTTGGGCTTCCTCGGTGGATGTTATGGCTGAGGATTTATAAA
ATCCTATCAGTCTGCTATCTATGTGCTCCTAAAATATCCGAAGAAGTTCC
TGTCGCGCGTTGGCTTCCGTTTCCGTCAGGGGACACCTCGGAAGGACAAT
GGAAGAAAATTTGTATCGAGGCTAAGGCATTGATGGCTCAGAAAGTGTGC
GCTACTTTTGCTTCAAACCCTTCTTGAGACCAATCTGTTGTGAAATACCG
CAATCCCCTCTTTAAGGAAGATGTGCCGTGCTGAACGGCCTCGCCTGTGA
T
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Coding sequence (CDS) from alignment at KK037248.1:99861..101361-

>rna8213 ID=rna8213|Name=rna8213|organism=Nannochloropsis gaditana|type=CDS|length=1956bp|location=Sequence derived from alignment at KK037248.1:99861..101361- (Nannochloropsis gaditana)
GCACGGGGAGAGTGAGTGGAACAAAGAAAATCGCTTCACTGGTTGGTACG
ATGTGCAACTATCAGAAAAAGGCATTGCTGAGGCCAAGGAGGGTGGACGG
CTGCTGAAAGAAGCTGGTTTTACTTTCGACAAGGCATACACGTCCGTGCT
GCGCCGGGCTATCAAGACCTGCTGGCTCGTCCTGGAGGAAATGGATCTCA
TGTGGATCCCCGTCGAAAAAGCTTGGCAGCTGAACGAGCGGCACTACGGG
GCCCTGCAGGGGCTGGACAAGAACGAGACTGTCGCCAAGCACGGCAAGGA
TCAGGTGCACATTTGGCGTCGGTCCTACGACATCCCCCCTCCGCCGCTTG
AAAAAAACAATCCCCATTACCCTGGTAACGACGTCCGATATGGCCAACTA
CTGCAGAGGGAGACGCCTGTCACCGAGAGCCTGAAGACCACGTTGGATCG
CGTCGTGCCGTTCTGGGAGAAGGTCATCAAGCCGGATGTAACCGCTGGAA
AAGGCCTCCTTATTGCCGCACACGGTAATTCCTTGCGAGCATTGGTCAAG
AAGCTGGACAATATCCCTGACTCGGACATTACGGAGCTGAACATTCCCAC
CGGCACCCCCCTTGTGTACGAGCTCGACTCTGAGTTTAAGCCCATCAAGC
ACAAGGAGAGCATAGGGCCCCTGTCAGGGCGCTACCTTGGCAACCAGGAG
GCTATCAAGGCCCGCATCTTGGGCGTCAAGAACCAGACCAAGTGAATGCC
CTCATCTTTTCTACGTTTGCTCTTATGTCGGCGTCCAACCCGCCAAATCA
TTCCGCGGTCTCATCCTGATCGCTCAACTCAGTTTTCCAGGGAGTCGGGC
ATTACGGCAAACATGCTTATCAGCTCCTTTATGGCTGCTCCCAAAACATT
GCTCCGTCCCTCGACGATCCTAAGACGTCACGCTAGCGGGAATAGCTCGA
AGGCAGCATATCGCATGGTCCTAGTCAGGCACGGGGAGAGTGAGTGGAAC
AAAGAAAATCGCTTCACTGGTTGGTACGATGTGCAACTATCAGAAAAAGG
CATTGCTGAGGCCAAGGAGGGTGGACGGCTGCTGAAAGAAGCTGGTTTTA
CTTTCGACAAGGCATACACGTCCGTGCTGCGCCGGGCTATCAAGACCTGC
TGGCTCGTCCTGGAGGAAATGGATCTCATGTGGATCCCCGTCGAAAAAGC
TTGGCAGCTGAACGAGCGGCACTACGGGGCCCTGCAGGGGCTGGACAAGA
ACGAGACTGTCGCCAAGCACGGCAAGGATCAGGTGCACATTTGGCGTCGG
TCCTACGACATCCCCCCTCCGCCGCTTGAAAAAAACAATCCCCATTACCC
TGGTAACGACGTCCGATATGGCCAACTACTGCAGAGGGAGACGCCTGTCA
CCGAGAGCCTGAAGACCACGTTGGATCGCGTCGTGCCGTTCTGGGAGAAG
GTCATCAAGCCGGATGTAACCGCTGGAAAAGGCCTCCTTATTGCCGCACA
CGGTAATTCCTTGCGAGCATTGGTCAAGAAGCTGGACAATATCCCTGACT
CGGACATTACGGAGCTGAACATTCCCACCGGCACCCCCCTTGTGTACGAG
CTCGACTCTGAGTTTAAGCCCATCAAGCACAAGGAGAGCATAGGGCCCCT
GTCAGGGCGCTACCTTGGCAACCAGGAGGCTATCAAGGCCCGCATCTTGG
GCGTCAAGAACCAGACCAAGTGAATGCCCTCATCTTTTCTACGTTTGCTC
TTATGTCGGCGTCCAACCCGCCAAATCATTCCGCGGTCTCATCCTGATCG
CTCAACTCAGTTTTCCAGGGAGTCGGGCATTACGGCAAACATGCTTATCA
GCTCCTTTATGGCTGCTCCCAAAACATTGCTCCGTCCCTCGACGATCCTA
AGACGTCACGCTAGCGGGAATAGCTCGAAGGCAGCATATCGCATGGTCCT
AGTCAG
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Synonyms
Publications